Wall clock time and date at job start Mon Mar 30 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34233 * 126.50123 * 2 1 4 4 N 1.36831 * 109.93225 * 180.02562 * 3 2 1 5 5 H 0.96998 * 125.06548 * 180.02562 * 4 3 2 6 6 C 1.37686 * 109.86689 * 359.97438 * 4 3 2 7 7 C 1.39133 * 133.49774 * 180.02562 * 6 4 3 8 8 C 1.37739 * 119.77544 * 179.97438 * 7 6 4 9 9 C 1.38836 * 120.66794 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.73616 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.46895 * 118.29316 * 10 9 8 12 12 C 1.53001 * 109.46995 * 358.29652 * 10 9 8 13 13 C 1.50694 * 109.47497 * 238.29420 * 10 9 8 14 14 H 1.08008 * 119.99626 * 0.09342 * 13 10 9 15 15 C 1.37878 * 120.00248 * 180.09330 * 13 10 9 16 16 N 1.31510 * 120.00090 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99858 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47232 * 89.99930 * 17 15 13 19 19 H 1.48499 * 109.47007 * 210.00269 * 17 15 13 20 20 H 1.48503 * 109.46940 * 329.99951 * 17 15 13 21 21 C 1.36625 * 120.52747 * 0.25206 * 9 8 7 22 22 C 1.39630 * 119.76302 * 359.45900 * 21 9 8 23 23 H 1.09001 * 109.47470 * 269.98203 * 1 2 3 24 24 H 1.09005 * 109.47105 * 29.97822 * 1 2 3 25 25 H 1.09001 * 109.47413 * 149.97661 * 1 2 3 26 26 H 1.08009 * 125.03532 * 0.02562 * 3 2 1 27 27 H 1.07999 * 120.11058 * 359.97438 * 7 6 4 28 28 H 1.08007 * 119.66797 * 180.02562 * 8 7 6 29 29 H 1.08996 * 109.47079 * 60.00273 * 11 10 9 30 30 H 1.08998 * 109.47607 * 299.99808 * 11 10 9 31 31 H 1.09001 * 109.47220 * 180.02562 * 11 10 9 32 32 H 1.09001 * 109.46917 * 179.97438 * 12 10 9 33 33 H 1.08999 * 109.47303 * 299.99613 * 12 10 9 34 34 H 1.08998 * 109.47374 * 60.00273 * 12 10 9 35 35 H 0.96997 * 120.00245 * 179.97438 * 16 15 13 36 36 H 1.07995 * 120.11364 * 179.72310 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0790 0.0000 4 7 3.6170 0.6888 -0.0006 5 1 4.3775 1.2909 -0.0003 6 6 3.6962 -0.6858 -0.0004 7 6 4.7589 -1.5838 -0.0003 8 6 4.5097 -2.9385 0.0004 9 6 3.2071 -3.4188 0.0005 10 6 2.9585 -4.9052 0.0008 11 6 2.2001 -5.2952 1.2710 12 6 4.2966 -5.6460 -0.0421 13 6 2.1392 -5.2777 -1.2078 14 1 1.8306 -4.5146 -1.9072 15 6 1.7834 -6.5927 -1.4209 16 7 2.1595 -7.5219 -0.5697 17 14 0.7683 -7.0545 -2.9196 18 1 1.6744 -7.3757 -4.0514 19 1 -0.0692 -8.2395 -2.6041 20 1 -0.1074 -5.9152 -3.2945 21 6 2.1487 -2.5548 -0.0052 22 6 2.3783 -1.1775 0.0001 23 1 -0.3634 -0.0003 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8898 -0.5142 26 1 1.9634 2.1035 0.0004 27 1 5.7757 -1.2199 -0.0008 28 1 5.3359 -3.6340 0.0009 29 1 1.2469 -4.7675 1.3016 30 1 2.7927 -5.0259 2.1453 31 1 2.0207 -6.3704 1.2715 32 1 4.1168 -6.7211 -0.0415 33 1 4.8369 -5.3681 -0.9470 34 1 4.8892 -5.3766 0.8322 35 1 1.9089 -8.4469 -0.7194 36 1 1.1382 -2.9358 -0.0096 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260363862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:22 Heat of formation + Delta-G solvation = 29.620874 kcal Electronic energy + Delta-G solvation = -17314.925619 eV Core-core repulsion = 14763.267598 eV Total energy + Delta-G solvation = -2551.658022 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.01867 -39.08257 -36.00772 -33.80479 -33.07532 -30.87469 -29.14919 -27.77599 -27.21297 -26.92578 -23.63674 -22.88645 -20.84401 -19.83348 -18.62387 -17.93622 -16.91552 -16.73985 -15.68075 -15.42809 -15.05455 -14.75757 -14.58445 -13.99254 -13.64037 -13.56061 -13.50015 -13.26167 -12.98749 -12.92576 -12.64970 -12.60048 -12.34244 -12.12724 -11.93230 -11.78606 -11.30873 -11.03036 -10.71772 -10.33275 -10.26984 -8.82683 -8.30214 -7.95767 -6.12102 0.39708 0.92263 1.41391 1.43432 1.52643 1.89943 2.41696 2.47233 3.16839 3.26874 3.97975 4.06264 4.31420 4.39791 4.54135 4.61182 4.81043 4.84573 4.94187 4.95554 4.98861 5.07800 5.10549 5.16177 5.24743 5.29859 5.44036 5.48303 5.65216 5.66376 5.77724 5.92070 5.95635 6.02669 6.21053 6.39504 6.45663 6.54356 6.91816 6.92547 7.54325 9.01748 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026583 B = 0.007245 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.066350 B = 3863.559951 C = 4420.994539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.215 4.215 3 C 0.064 3.936 4 N -0.586 5.586 5 H 0.429 0.571 6 C 0.065 3.935 7 C -0.131 4.131 8 C -0.119 4.119 9 C -0.079 4.079 10 C 0.091 3.909 11 C -0.115 4.115 12 C -0.121 4.121 13 C -0.510 4.510 14 H 0.039 0.961 15 C 0.024 3.976 16 N -0.904 5.904 17 Si 0.942 3.058 18 H -0.278 1.278 19 H -0.282 1.282 20 H -0.276 1.276 21 C -0.090 4.090 22 C -0.129 4.129 23 H 0.064 0.936 24 H 0.086 0.914 25 H 0.041 0.959 26 H 0.212 0.788 27 H 0.145 0.855 28 H 0.131 0.869 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.027 0.973 34 H 0.031 0.969 35 H 0.259 0.741 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.246 16.264 1.887 16.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.222 4.222 3 C -0.062 4.062 4 N -0.191 5.191 5 H 0.269 0.731 6 C -0.041 4.041 7 C -0.151 4.151 8 C -0.138 4.138 9 C -0.080 4.080 10 C 0.090 3.910 11 C -0.173 4.173 12 C -0.178 4.178 13 C -0.548 4.548 14 H 0.057 0.943 15 C -0.175 4.175 16 N -0.544 5.544 17 Si 0.769 3.231 18 H -0.204 1.204 19 H -0.207 1.207 20 H -0.201 1.201 21 C -0.108 4.108 22 C -0.133 4.133 23 H 0.083 0.917 24 H 0.104 0.896 25 H 0.060 0.940 26 H 0.229 0.771 27 H 0.162 0.838 28 H 0.148 0.852 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.317 16.174 1.913 16.451 hybrid contribution -0.315 -0.673 -0.815 1.103 sum 2.002 15.501 1.098 15.668 Atomic orbital electron populations 1.20062 0.88882 1.02226 1.01756 1.20648 0.96366 0.90901 1.14265 1.22108 0.81640 0.99907 1.02553 1.41600 1.08253 1.03825 1.65437 0.73113 1.18304 0.95022 0.84630 1.06181 1.20196 0.97389 0.91386 1.06129 1.21092 0.96648 0.94929 1.01174 1.19943 0.92982 0.96711 0.98325 1.17172 0.93373 0.86833 0.93573 1.21659 0.97504 1.02286 0.95850 1.21725 0.96388 1.02479 0.97233 1.21312 1.32798 0.92716 1.07970 0.94273 1.25507 0.96960 0.96506 0.98533 1.69929 1.46789 1.00993 1.36680 0.85805 0.79083 0.77580 0.80653 1.20446 1.20709 1.20128 1.20020 0.98405 0.91158 1.01254 1.19515 0.93857 0.93269 1.06692 0.91736 0.89554 0.93962 0.77137 0.83774 0.85173 0.96124 0.96049 0.91826 0.92201 0.95438 0.95031 0.93139 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.83 10.41 71.24 0.74 -1.09 16 2 C -0.21 -6.47 6.32 -18.63 -0.12 -6.59 16 3 C 0.06 1.42 11.73 83.00 0.97 2.39 16 4 N -0.59 -13.60 6.07 -187.61 -1.14 -14.74 16 5 H 0.43 6.41 8.96 -92.71 -0.83 5.58 16 6 C 0.07 2.15 7.28 39.03 0.28 2.44 16 7 C -0.13 -4.32 10.08 22.37 0.23 -4.09 16 8 C -0.12 -4.74 8.95 22.29 0.20 -4.54 16 9 C -0.08 -3.62 4.71 -20.10 -0.09 -3.71 16 10 C 0.09 4.62 0.58 -53.68 -0.03 4.59 16 11 C -0.12 -5.83 8.08 71.98 0.58 -5.25 16 12 C -0.12 -5.88 6.90 71.98 0.50 -5.39 16 13 C -0.51 -28.61 7.61 25.60 0.19 -28.42 16 14 H 0.04 2.27 7.54 -2.91 -0.02 2.25 16 15 C 0.02 1.31 5.15 84.66 0.44 1.75 16 16 N -0.90 -51.00 9.35 21.45 0.20 -50.80 16 17 Si 0.94 44.49 29.54 68.60 2.03 46.52 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 C -0.09 -4.03 8.61 22.23 0.19 -3.84 16 22 C -0.13 -4.95 6.35 -20.20 -0.13 -5.08 16 23 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.21 2.45 8.06 -2.91 -0.02 2.42 16 27 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 28 H 0.13 4.87 5.84 -2.91 -0.02 4.86 16 29 H 0.02 1.00 7.47 -2.39 -0.02 0.99 16 30 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 3.47 6.06 -2.39 -0.01 3.45 16 32 H 0.06 3.20 6.08 -2.39 -0.01 3.18 16 33 H 0.03 1.28 7.58 -2.39 -0.02 1.26 16 34 H 0.03 1.36 7.42 -2.39 -0.02 1.34 16 35 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 36 H 0.10 4.56 7.59 -2.91 -0.02 4.54 16 Total: -1.00 -65.93 290.55 5.29 -60.64 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.25 Total: 15.20 kcal Atomic # 6 Polarization: -60.78 SS G_CDS: 3.95 Total: -56.82 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: -0.94 Total: -65.53 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -65.93 5.29 -60.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260363862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.262 kcal (2) G-P(sol) polarization free energy of solvation -65.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds