Wall clock time and date at job start Mon Mar 30 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34331 * 125.09086 * 2 1 4 4 C 1.46552 * 106.82986 * 180.02562 * 3 2 1 5 5 C 1.39899 * 133.88335 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.19998 * 180.02562 * 5 4 3 7 7 C 1.37958 * 120.68319 * 0.02562 * 6 5 4 8 8 C 1.40591 * 120.36836 * 359.97438 * 7 6 5 9 9 C 1.40978 * 120.29993 * 180.02562 * 8 7 6 10 10 H 1.08009 * 119.99964 * 138.47802 * 9 8 7 11 11 C 1.39947 * 120.00265 * 318.47374 * 9 8 7 12 12 N 1.30850 * 120.00152 * 171.73743 * 11 9 8 13 13 Si 1.86799 * 119.99814 * 351.73427 * 11 9 8 14 14 H 1.48503 * 109.47144 * 88.37940 * 13 11 9 15 15 H 1.48493 * 109.47248 * 208.38260 * 13 11 9 16 16 H 1.48501 * 109.47268 * 328.38501 * 13 11 9 17 17 C 1.40279 * 105.99625 * 359.76919 * 4 3 2 18 18 N 1.36710 * 125.10339 * 180.02562 * 2 1 3 19 19 C 1.46505 * 124.99561 * 359.96932 * 18 2 1 20 20 C 1.53007 * 109.46621 * 65.72866 * 19 18 2 21 21 C 1.52997 * 109.47197 * 305.73069 * 19 18 2 22 22 H 1.08999 * 109.46917 * 274.82297 * 1 2 3 23 23 H 1.09001 * 109.47320 * 34.83116 * 1 2 3 24 24 H 1.09001 * 109.46659 * 154.83351 * 1 2 3 25 25 H 1.07992 * 126.58792 * 0.02562 * 3 2 1 26 26 H 1.08006 * 119.89738 * 359.97438 * 5 4 3 27 27 H 1.07994 * 119.65612 * 179.97438 * 6 5 4 28 28 H 1.08000 * 119.81499 * 180.02562 * 7 6 5 29 29 H 0.96998 * 119.99930 * 180.02562 * 12 11 9 30 30 H 1.08997 * 109.46887 * 185.72330 * 19 18 2 31 31 H 1.09000 * 109.46984 * 293.99968 * 20 19 18 32 32 H 1.08995 * 109.47065 * 54.00001 * 20 19 18 33 33 H 1.09000 * 109.46603 * 173.99754 * 20 19 18 34 34 H 1.09003 * 109.46734 * 179.97438 * 21 19 18 35 35 H 1.09000 * 109.47039 * 299.99741 * 21 19 18 36 36 H 1.08994 * 109.47092 * 59.99931 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2792 1.0992 0.0000 4 6 3.6710 0.6399 -0.0006 5 6 4.9078 1.2936 -0.0014 6 6 6.0809 0.5622 -0.0024 7 6 6.0505 -0.8170 -0.0032 8 6 4.8221 -1.5009 -0.0025 9 6 4.7928 -2.9104 -0.0028 10 1 4.0818 -3.4359 0.6177 11 6 5.6848 -3.6287 -0.8070 12 7 5.7702 -4.9291 -0.6894 13 14 6.7535 -2.7311 -2.0486 14 1 8.0182 -2.3055 -1.3971 15 1 7.0620 -3.6379 -3.1834 16 1 6.0298 -1.5362 -2.5524 17 6 3.6155 -0.7618 0.0045 18 7 2.2932 -1.1184 -0.0005 19 6 1.7945 -2.4960 -0.0005 20 6 1.0627 -2.7734 -1.3153 21 6 0.8293 -2.6890 1.1709 22 1 -0.3633 0.0864 1.0240 23 1 -0.3634 0.8435 -0.5870 24 1 -0.3633 -0.9301 -0.4370 25 1 1.9398 2.1243 0.0004 26 1 4.9463 2.3730 -0.0020 27 1 7.0308 1.0758 -0.0034 28 1 6.9755 -1.3745 -0.0036 29 1 6.3887 -5.4270 -1.2466 30 1 2.6323 -3.1857 0.1015 31 1 0.1647 -2.1579 -1.3681 32 1 1.7174 -2.5335 -2.1530 33 1 0.7849 -3.8264 -1.3612 34 1 0.4580 -3.7138 1.1706 35 1 1.3506 -2.4913 2.1075 36 1 -0.0085 -1.9993 1.0687 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260393877.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:39 Heat of formation + Delta-G solvation = 48.242852 kcal Electronic energy + Delta-G solvation = -17854.046519 eV Core-core repulsion = 15303.196007 eV Total energy + Delta-G solvation = -2550.850512 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.51658 -36.46265 -34.58514 -33.05269 -31.21676 -30.14291 -28.16841 -26.91394 -25.74159 -24.90150 -21.55163 -20.75903 -20.33396 -18.12742 -17.26011 -16.20581 -15.35173 -14.59261 -14.35931 -13.95497 -13.58019 -13.43397 -13.19061 -12.98086 -12.48193 -12.28959 -12.16397 -11.86870 -11.76626 -11.60186 -11.31567 -11.16438 -10.87876 -10.79759 -10.51419 -10.31493 -9.79309 -9.71091 -9.38429 -9.11583 -8.26490 -7.00967 -6.81812 -6.58532 -4.39823 2.30066 2.85999 3.16715 3.25936 3.37253 3.60099 3.73812 4.07789 4.66741 5.19157 5.27930 5.33174 5.43407 5.49647 5.62165 5.80560 5.82889 5.90863 6.02188 6.05957 6.10937 6.17098 6.27960 6.32869 6.50572 6.55224 6.57917 6.73997 6.85185 7.00565 7.23363 7.30774 7.65703 7.75016 7.92695 8.07172 8.17111 8.35267 8.45037 8.68369 8.86190 10.21484 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.011364 C = 0.008217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.448251 B = 2463.360606 C = 3406.788504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.060 3.940 3 C -0.232 4.232 4 C -0.082 4.082 5 C -0.191 4.191 6 C -0.095 4.095 7 C -0.240 4.240 8 C 0.103 3.897 9 C -0.469 4.469 10 H 0.093 0.907 11 C 0.087 3.913 12 N -0.829 5.829 13 Si 0.907 3.093 14 H -0.269 1.269 15 H -0.294 1.294 16 H -0.248 1.248 17 C 0.048 3.952 18 N -0.450 5.450 19 C 0.108 3.892 20 C -0.160 4.160 21 C -0.166 4.166 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.128 0.872 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.282 0.718 30 H 0.134 0.866 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.018 4.347 -0.325 9.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C -0.258 4.258 4 C -0.086 4.086 5 C -0.211 4.211 6 C -0.114 4.114 7 C -0.261 4.261 8 C 0.099 3.901 9 C -0.498 4.498 10 H 0.110 0.890 11 C -0.129 4.129 12 N -0.456 5.456 13 Si 0.734 3.266 14 H -0.194 1.194 15 H -0.222 1.222 16 H -0.171 1.171 17 C -0.057 4.057 18 N -0.132 5.132 19 C 0.007 3.993 20 C -0.218 4.218 21 C -0.224 4.224 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.145 0.855 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.092 0.908 30 H 0.152 0.848 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.071 3.723 -0.382 8.896 hybrid contribution 0.614 0.235 -0.546 0.855 sum -7.456 3.958 -0.928 8.492 Atomic orbital electron populations 1.20610 0.89550 1.02732 1.02026 1.19985 0.92569 0.86298 1.06107 1.21211 0.91383 0.96361 1.16841 1.18932 0.92641 0.92145 1.04903 1.19849 0.90586 0.97112 1.13524 1.20418 0.96146 0.94044 1.00832 1.20733 0.96197 0.93482 1.15727 1.16878 0.88057 0.93231 0.91926 1.19194 1.17276 0.89495 1.23872 0.88984 1.25943 0.94986 0.94759 0.97172 1.69630 1.32586 1.07674 1.35678 0.86332 0.80803 0.79988 0.79492 1.19424 1.22174 1.17113 1.18585 0.84102 0.93154 1.09843 1.43535 1.03961 1.04406 1.61310 1.21799 0.99591 0.83221 0.94737 1.22227 1.00248 1.01515 0.97808 1.22301 0.99513 1.01980 0.98585 0.91481 0.91048 0.91164 0.85459 0.88779 0.88742 0.87747 0.90761 0.84846 0.92600 0.91921 0.91611 0.91556 0.92243 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 8.48 36.01 0.31 -0.93 16 2 C 0.06 1.11 6.36 -81.80 -0.52 0.59 16 3 C -0.23 -4.63 10.97 -37.61 -0.41 -5.04 16 4 C -0.08 -1.90 6.37 -105.16 -0.67 -2.57 16 5 C -0.19 -4.27 10.10 -38.96 -0.39 -4.67 16 6 C -0.10 -2.17 10.00 -39.68 -0.40 -2.56 16 7 C -0.24 -5.97 7.13 -38.80 -0.28 -6.24 16 8 C 0.10 2.66 4.89 -106.73 -0.52 2.14 16 9 C -0.47 -12.44 8.15 -37.90 -0.31 -12.75 16 10 H 0.09 2.52 5.98 -52.48 -0.31 2.20 16 11 C 0.09 2.29 5.48 -17.33 -0.09 2.20 16 12 N -0.83 -22.11 13.93 55.55 0.77 -21.33 16 13 Si 0.91 21.44 24.65 -169.99 -4.19 17.25 16 14 H -0.27 -6.18 6.68 56.52 0.38 -5.80 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.25 -6.12 6.98 56.52 0.39 -5.72 16 17 C 0.05 1.18 6.77 -83.56 -0.57 0.62 16 18 N -0.45 -9.43 2.63 -102.43 -0.27 -9.70 16 19 C 0.11 2.01 3.29 -67.93 -0.22 1.79 16 20 C -0.16 -2.57 9.20 37.16 0.34 -2.23 16 21 C -0.17 -2.52 9.07 37.16 0.34 -2.18 16 22 H 0.07 0.81 7.89 -51.93 -0.41 0.40 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.07 0.88 4.14 -51.93 -0.21 0.67 16 25 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 26 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 27 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 28 H 0.10 2.57 5.43 -52.49 -0.29 2.29 16 29 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 30 H 0.13 2.90 4.15 -51.93 -0.22 2.68 16 31 H 0.06 0.77 5.45 -51.93 -0.28 0.49 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.82 5.00 -51.93 -0.26 0.56 16 LS Contribution 279.46 15.07 4.21 4.21 Total: -1.00 -28.73 279.46 -7.41 -36.14 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.53 Total: 5.29 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: -3.40 Total: -31.85 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.50 Total: -31.04 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.19 Total: 17.25 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.73 -7.41 -36.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393877.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.378 kcal (2) G-P(sol) polarization free energy of solvation -28.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds