Wall clock time and date at job start Mon Mar 30 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34331 * 125.09086 * 2 1 4 4 C 1.46552 * 106.82986 * 180.02562 * 3 2 1 5 5 C 1.39899 * 133.88335 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.19998 * 180.02562 * 5 4 3 7 7 C 1.37958 * 120.68319 * 0.02562 * 6 5 4 8 8 C 1.40591 * 120.36836 * 359.97438 * 7 6 5 9 9 C 1.40978 * 120.29993 * 180.02562 * 8 7 6 10 10 H 1.08009 * 119.99964 * 138.47802 * 9 8 7 11 11 C 1.39947 * 120.00265 * 318.47374 * 9 8 7 12 12 N 1.30850 * 120.00152 * 171.73743 * 11 9 8 13 13 Si 1.86799 * 119.99814 * 351.73427 * 11 9 8 14 14 H 1.48503 * 109.47144 * 88.37940 * 13 11 9 15 15 H 1.48493 * 109.47248 * 208.38260 * 13 11 9 16 16 H 1.48501 * 109.47268 * 328.38501 * 13 11 9 17 17 C 1.40279 * 105.99625 * 359.76919 * 4 3 2 18 18 N 1.36710 * 125.10339 * 180.02562 * 2 1 3 19 19 C 1.46505 * 124.99561 * 359.96932 * 18 2 1 20 20 C 1.53007 * 109.46621 * 65.72866 * 19 18 2 21 21 C 1.52997 * 109.47197 * 305.73069 * 19 18 2 22 22 H 1.08999 * 109.46917 * 274.82297 * 1 2 3 23 23 H 1.09001 * 109.47320 * 34.83116 * 1 2 3 24 24 H 1.09001 * 109.46659 * 154.83351 * 1 2 3 25 25 H 1.07992 * 126.58792 * 0.02562 * 3 2 1 26 26 H 1.08006 * 119.89738 * 359.97438 * 5 4 3 27 27 H 1.07994 * 119.65612 * 179.97438 * 6 5 4 28 28 H 1.08000 * 119.81499 * 180.02562 * 7 6 5 29 29 H 0.96998 * 119.99930 * 180.02562 * 12 11 9 30 30 H 1.08997 * 109.46887 * 185.72330 * 19 18 2 31 31 H 1.09000 * 109.46984 * 293.99968 * 20 19 18 32 32 H 1.08995 * 109.47065 * 54.00001 * 20 19 18 33 33 H 1.09000 * 109.46603 * 173.99754 * 20 19 18 34 34 H 1.09003 * 109.46734 * 179.97438 * 21 19 18 35 35 H 1.09000 * 109.47039 * 299.99741 * 21 19 18 36 36 H 1.08994 * 109.47092 * 59.99931 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2792 1.0992 0.0000 4 6 3.6710 0.6399 -0.0006 5 6 4.9078 1.2936 -0.0014 6 6 6.0809 0.5622 -0.0024 7 6 6.0505 -0.8170 -0.0032 8 6 4.8221 -1.5009 -0.0025 9 6 4.7928 -2.9104 -0.0028 10 1 4.0818 -3.4359 0.6177 11 6 5.6848 -3.6287 -0.8070 12 7 5.7702 -4.9291 -0.6894 13 14 6.7535 -2.7311 -2.0486 14 1 8.0182 -2.3055 -1.3971 15 1 7.0620 -3.6379 -3.1834 16 1 6.0298 -1.5362 -2.5524 17 6 3.6155 -0.7618 0.0045 18 7 2.2932 -1.1184 -0.0005 19 6 1.7945 -2.4960 -0.0005 20 6 1.0627 -2.7734 -1.3153 21 6 0.8293 -2.6890 1.1709 22 1 -0.3633 0.0864 1.0240 23 1 -0.3634 0.8435 -0.5870 24 1 -0.3633 -0.9301 -0.4370 25 1 1.9398 2.1243 0.0004 26 1 4.9463 2.3730 -0.0020 27 1 7.0308 1.0758 -0.0034 28 1 6.9755 -1.3745 -0.0036 29 1 6.3887 -5.4270 -1.2466 30 1 2.6323 -3.1857 0.1015 31 1 0.1647 -2.1579 -1.3681 32 1 1.7174 -2.5335 -2.1530 33 1 0.7849 -3.8264 -1.3612 34 1 0.4580 -3.7138 1.1706 35 1 1.3506 -2.4913 2.1075 36 1 -0.0085 -1.9993 1.0687 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260393877.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:38 Heat of formation + Delta-G solvation = 32.826345 kcal Electronic energy + Delta-G solvation = -17854.715029 eV Core-core repulsion = 15303.196007 eV Total energy + Delta-G solvation = -2551.519022 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.12772 -38.16943 -36.22113 -34.84498 -32.78191 -31.74362 -29.83060 -28.17430 -27.23513 -26.76614 -23.08990 -22.50477 -22.03209 -19.71551 -19.14193 -17.80368 -17.13163 -16.27035 -15.86173 -15.66631 -15.17907 -15.04369 -14.69333 -14.31182 -13.95580 -13.87829 -13.67806 -13.43933 -13.30485 -12.97036 -12.79192 -12.72959 -12.61063 -12.36511 -12.20356 -11.91460 -11.51557 -11.44934 -11.10768 -10.98972 -10.01483 -8.81694 -8.71079 -8.29847 -6.38964 0.55252 1.03381 1.25326 1.35301 1.45856 1.97190 2.15127 2.22389 2.74324 3.48160 3.84001 3.96748 4.11681 4.11963 4.31331 4.44415 4.50301 4.58041 4.67967 4.71663 4.80566 4.84707 4.87024 4.90582 5.00495 5.06696 5.12599 5.24914 5.26821 5.38535 5.47001 5.50839 5.83532 5.96994 6.08930 6.28987 6.38161 6.53731 6.74687 6.88466 6.93268 8.28674 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.011364 C = 0.008217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.448251 B = 2463.360606 C = 3406.788504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.073 3.927 3 C -0.248 4.248 4 C -0.107 4.107 5 C -0.182 4.182 6 C -0.110 4.110 7 C -0.253 4.253 8 C 0.076 3.924 9 C -0.483 4.483 10 H 0.069 0.931 11 C 0.054 3.946 12 N -0.865 5.865 13 Si 0.954 3.046 14 H -0.259 1.259 15 H -0.281 1.281 16 H -0.267 1.267 17 C 0.017 3.983 18 N -0.458 5.458 19 C 0.100 3.900 20 C -0.152 4.152 21 C -0.156 4.156 22 H 0.089 0.911 23 H 0.097 0.903 24 H 0.082 0.918 25 H 0.158 0.842 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.098 0.902 29 H 0.288 0.712 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.034 0.966 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.169 6.398 -0.629 12.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.037 4.037 3 C -0.273 4.273 4 C -0.111 4.111 5 C -0.202 4.202 6 C -0.128 4.128 7 C -0.274 4.274 8 C 0.072 3.928 9 C -0.514 4.514 10 H 0.086 0.914 11 C -0.158 4.158 12 N -0.494 5.494 13 Si 0.779 3.221 14 H -0.185 1.185 15 H -0.208 1.208 16 H -0.191 1.191 17 C -0.089 4.089 18 N -0.139 5.139 19 C -0.002 4.002 20 C -0.210 4.210 21 C -0.214 4.214 22 H 0.108 0.892 23 H 0.116 0.884 24 H 0.100 0.900 25 H 0.176 0.824 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.226 5.770 -0.680 11.761 hybrid contribution 1.151 -0.244 -0.383 1.237 sum -9.075 5.527 -1.063 10.678 Atomic orbital electron populations 1.20802 0.85288 1.04564 1.04111 1.20877 0.95073 0.84972 1.02782 1.21584 0.89742 0.98303 1.17715 1.19511 0.94713 0.92010 1.04916 1.20315 0.90230 0.98730 1.10905 1.20750 0.97949 0.93289 1.00847 1.20881 0.95706 0.94737 1.16109 1.17063 0.89462 0.93055 0.93203 1.19156 1.17551 0.90194 1.24540 0.91367 1.26453 0.95872 0.95231 0.98235 1.69660 1.34126 1.08408 1.37211 0.85622 0.79714 0.78471 0.78259 1.18455 1.20807 1.19143 1.18828 0.85345 0.94050 1.10722 1.43840 1.03222 1.05931 1.60934 1.21870 0.99164 0.81560 0.97605 1.22175 1.00355 1.03341 0.95110 1.22245 0.99101 1.04118 0.95926 0.89243 0.88409 0.89997 0.82432 0.85721 0.85671 0.88363 0.90184 0.88970 0.89603 0.94685 0.89819 0.89438 0.94086 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.99 8.48 71.24 0.60 -1.39 16 2 C 0.07 2.50 6.36 40.91 0.26 2.76 16 3 C -0.25 -9.23 10.97 23.55 0.26 -8.97 16 4 C -0.11 -4.84 6.37 -20.21 -0.13 -4.97 16 5 C -0.18 -7.86 10.10 22.67 0.23 -7.63 16 6 C -0.11 -4.88 10.00 22.20 0.22 -4.66 16 7 C -0.25 -12.82 7.13 22.78 0.16 -12.66 16 8 C 0.08 4.06 4.89 -21.23 -0.10 3.95 16 9 C -0.48 -27.19 8.15 23.36 0.19 -27.00 16 10 H 0.07 4.05 5.98 -2.91 -0.02 4.03 16 11 C 0.05 2.95 5.48 85.25 0.47 3.42 16 12 N -0.87 -48.20 13.93 21.83 0.30 -47.89 16 13 Si 0.95 45.52 24.65 68.60 1.69 47.21 16 14 H -0.26 -11.83 6.68 99.48 0.66 -11.16 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.27 -13.41 6.98 99.48 0.69 -12.72 16 17 C 0.02 0.82 6.77 39.64 0.27 1.09 16 18 N -0.46 -18.93 2.63 -477.99 -1.26 -20.19 16 19 C 0.10 3.68 3.29 44.99 0.15 3.83 16 20 C -0.15 -4.68 9.20 71.98 0.66 -4.02 16 21 C -0.16 -4.46 9.07 71.98 0.65 -3.81 16 22 H 0.09 1.66 7.89 -2.39 -0.02 1.64 16 23 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.08 1.62 4.14 -2.39 -0.01 1.61 16 25 H 0.16 4.77 8.06 -2.91 -0.02 4.75 16 26 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 27 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 28 H 0.10 4.96 5.43 -2.91 -0.02 4.94 16 29 H 0.29 14.69 8.30 -92.71 -0.77 13.92 16 30 H 0.09 4.25 4.15 -2.39 -0.01 4.24 16 31 H 0.09 2.08 5.45 -2.39 -0.01 2.07 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 2.02 5.00 -2.39 -0.01 2.01 16 Total: -1.00 -65.50 279.46 5.66 -59.84 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 1.03 Total: 21.08 kcal Atomic # 6 Polarization: -63.95 SS G_CDS: 3.89 Total: -60.05 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -0.95 Total: -68.08 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.69 Total: 47.21 kcal Total: -65.50 5.66 -59.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393877.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.669 kcal (2) G-P(sol) polarization free energy of solvation -65.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds