Wall clock time and date at job start Mon Mar 30 2020 05:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00400 * 2 1 4 4 H 1.48499 * 109.47240 * 240.00241 * 3 2 1 5 5 H 1.48504 * 109.46722 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47405 * 119.99766 * 3 2 1 7 7 C 1.37880 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00404 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.40903 * 32.78087 * 9 7 2 11 11 C 1.54763 * 110.36443 * 155.05944 * 9 7 2 12 12 C 1.54988 * 102.93652 * 140.73321 * 11 9 7 13 13 N 1.48710 * 103.49064 * 322.90435 * 12 11 9 14 14 C 1.47614 * 105.41915 * 38.51253 * 13 12 11 15 15 C 1.53666 * 110.55897 * 96.23012 * 14 13 12 16 16 C 1.54494 * 102.21192 * 94.44070 * 15 14 13 17 17 C 1.51430 * 105.20955 * 25.74051 * 16 15 14 18 18 C 1.38460 * 130.37649 * 163.23441 * 17 16 15 19 19 C 1.38093 * 120.27335 * 180.02562 * 18 17 16 20 20 C 1.38246 * 119.89672 * 359.90368 * 19 18 17 21 21 C 1.38065 * 119.95363 * 0.03973 * 20 19 18 22 22 C 1.38418 * 109.76550 * 343.15968 * 17 16 15 23 23 H 0.96994 * 119.99493 * 359.97438 * 1 2 3 24 24 H 1.09005 * 110.71844 * 22.37831 * 11 9 7 25 25 H 1.08994 * 110.72797 * 259.09630 * 11 9 7 26 26 H 1.09001 * 110.64432 * 81.44586 * 12 11 9 27 27 H 1.08999 * 110.64951 * 204.35691 * 12 11 9 28 28 H 1.00899 * 111.00368 * 159.00636 * 13 12 11 29 29 H 1.09010 * 110.85032 * 212.61685 * 15 14 13 30 30 H 1.09000 * 110.86237 * 336.25700 * 15 14 13 31 31 H 1.09001 * 110.29904 * 144.67109 * 16 15 14 32 32 H 1.08999 * 110.29334 * 266.70721 * 16 15 14 33 33 H 1.08002 * 119.86129 * 359.92592 * 18 17 16 34 34 H 1.07999 * 120.05010 * 179.97438 * 19 18 17 35 35 H 1.08003 * 120.02183 * 180.02562 * 20 19 18 36 36 H 1.07999 * 119.85361 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.3173 -2.3991 -0.5530 11 6 2.1213 -3.6236 -0.6107 12 6 1.7974 -4.8420 0.2908 13 7 1.6600 -4.2443 1.6456 14 6 0.9728 -2.9546 1.4378 15 6 -0.5383 -3.1042 1.6733 16 6 -0.6814 -2.6853 3.1534 17 6 0.4922 -1.7667 3.4216 18 6 0.7094 -0.8661 4.4506 19 6 1.8726 -0.1229 4.4913 20 6 2.8254 -0.2796 3.5019 21 6 2.6119 -1.1777 2.4753 22 6 1.4458 -1.9242 2.4308 23 1 -0.4849 0.8400 0.0004 24 1 3.1794 -3.3688 -0.5492 25 1 1.8300 -3.8191 -1.6426 26 1 0.8636 -5.3115 -0.0186 27 1 2.6142 -5.5634 0.2701 28 1 1.1275 -4.8473 2.2546 29 1 -1.1005 -2.4329 1.0239 30 1 -0.8530 -4.1379 1.5303 31 1 -1.6205 -2.1535 3.3068 32 1 -0.6336 -3.5611 3.8005 33 1 -0.0346 -0.7432 5.2238 34 1 2.0381 0.5789 5.2953 35 1 3.7360 0.3004 3.5320 36 1 3.3571 -1.2985 1.7030 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260399818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:26 Heat of formation + Delta-G solvation = 33.909089 kcal Electronic energy + Delta-G solvation = -18460.253917 eV Core-core repulsion = 15908.781846 eV Total energy + Delta-G solvation = -2551.472071 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.85034 -36.90250 -33.76615 -32.79456 -30.14338 -29.34894 -27.96334 -26.98718 -24.71557 -22.31121 -21.56763 -20.17040 -19.76940 -18.51776 -16.61001 -15.62465 -14.95978 -14.70643 -14.17919 -14.14620 -13.79134 -13.32585 -12.46639 -12.28201 -12.15336 -11.85476 -11.77060 -11.46395 -11.12304 -10.98199 -10.73654 -10.58843 -10.45449 -10.33443 -10.21793 -9.92304 -9.54141 -9.19080 -8.77685 -8.40921 -7.78981 -7.66352 -7.39665 -6.04390 -3.98147 2.41298 2.52264 3.33215 3.37811 3.41727 4.44368 4.74584 5.17784 5.25164 5.33339 5.54193 5.76293 5.82340 5.89331 5.96281 5.98265 6.09510 6.15811 6.23277 6.38046 6.44779 6.52061 6.63224 6.75531 6.87565 6.92878 6.97526 6.99717 7.17967 7.26766 7.42246 7.57567 7.64027 7.78147 7.88465 7.96011 8.10032 8.18624 8.40301 8.96173 9.56982 11.05004 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.014759 C = 0.010533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.233941 B = 1896.735900 C = 2657.587487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.499 4.499 8 H 0.058 0.942 9 C 0.045 3.955 10 H 0.057 0.943 11 C -0.120 4.120 12 C 0.037 3.963 13 N -0.660 5.660 14 C 0.136 3.864 15 C -0.134 4.134 16 C -0.073 4.073 17 C -0.112 4.112 18 C -0.131 4.131 19 C -0.136 4.136 20 C -0.153 4.153 21 C -0.046 4.046 22 C 0.011 3.989 23 H 0.261 0.739 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.027 0.973 27 H 0.064 0.936 28 H 0.321 0.679 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.490 -5.062 4.444 6.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.127 4.127 3 Si 0.700 3.300 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.537 4.537 8 H 0.076 0.924 9 C 0.026 3.974 10 H 0.075 0.925 11 C -0.158 4.158 12 C -0.092 4.092 13 N -0.288 5.288 14 C 0.045 3.955 15 C -0.173 4.173 16 C -0.110 4.110 17 C -0.113 4.113 18 C -0.149 4.149 19 C -0.155 4.155 20 C -0.171 4.171 21 C -0.064 4.064 22 C 0.010 3.990 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.007 -4.688 4.498 6.574 hybrid contribution -0.643 0.908 -0.125 1.120 sum 0.364 -3.780 4.372 5.791 Atomic orbital electron populations 1.69864 1.05848 1.26650 1.49233 1.24831 0.94704 0.98622 0.94566 0.86926 0.80171 0.83928 0.78964 1.20437 1.21460 1.19165 1.20930 0.92551 0.89951 1.50242 0.92403 1.19632 0.96418 0.92553 0.88780 0.92475 1.22697 1.01260 0.94991 0.96869 1.23016 0.98516 0.97310 0.90354 1.63041 1.51279 1.04329 1.10116 1.21095 0.89134 0.87114 0.98133 1.22898 0.98444 0.99930 0.96062 1.20937 0.96207 0.96971 0.96864 1.20539 0.97094 0.97837 0.95788 1.20213 0.97647 0.98428 0.98611 1.20675 0.95002 1.00513 0.99274 1.20896 0.99235 1.01051 0.95899 1.20887 0.97599 0.93372 0.94547 1.19650 0.92563 0.94629 0.92120 0.92964 0.91926 0.93106 0.95427 0.91795 0.86408 0.88990 0.93018 0.92101 0.92115 0.88195 0.87789 0.87745 0.85476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.18 12.95 55.43 0.72 -23.46 16 2 C 0.08 2.02 4.59 -17.82 -0.08 1.93 16 3 Si 0.87 21.03 29.33 -169.99 -4.99 16.04 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.50 -12.73 4.88 -34.44 -0.17 -12.90 16 8 H 0.06 1.48 6.25 -52.49 -0.33 1.16 16 9 C 0.05 1.06 2.56 -90.68 -0.23 0.83 16 10 H 0.06 1.48 6.85 -51.93 -0.36 1.13 16 11 C -0.12 -2.42 6.61 -24.75 -0.16 -2.59 16 12 C 0.04 0.65 7.54 -1.77 -0.01 0.64 16 13 N -0.66 -12.58 7.08 -97.66 -0.69 -13.27 16 14 C 0.14 2.90 0.97 -131.85 -0.13 2.77 16 15 C -0.13 -2.67 5.94 -25.60 -0.15 -2.83 16 16 C -0.07 -1.36 6.78 -26.74 -0.18 -1.54 16 17 C -0.11 -2.38 6.15 -104.11 -0.64 -3.02 16 18 C -0.13 -2.60 10.03 -39.55 -0.40 -3.00 16 19 C -0.14 -2.67 10.05 -39.63 -0.40 -3.07 16 20 C -0.15 -3.18 10.04 -39.64 -0.40 -3.58 16 21 C -0.05 -1.04 7.46 -39.54 -0.29 -1.33 16 22 C 0.01 0.25 4.51 -104.44 -0.47 -0.22 16 23 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.06 1.29 7.71 -51.93 -0.40 0.89 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.32 5.48 8.31 -39.29 -0.33 5.16 16 29 H 0.09 2.08 7.58 -51.92 -0.39 1.68 16 30 H 0.05 0.90 7.89 -51.93 -0.41 0.49 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 34 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.10 1.96 8.06 -52.48 -0.42 1.54 16 36 H 0.13 2.97 5.68 -52.49 -0.30 2.67 16 LS Contribution 282.24 15.07 4.25 4.25 Total: -1.00 -27.28 282.24 -9.45 -36.73 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.03 Total: 7.61 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: -3.72 Total: -27.90 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.03 Total: -36.73 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.99 Total: 16.04 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.28 -9.45 -36.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260399818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.640 kcal (2) G-P(sol) polarization free energy of solvation -27.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds