Wall clock time and date at job start Mon Mar 30 2020 05:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00400 * 2 1 4 4 H 1.48499 * 109.47240 * 240.00241 * 3 2 1 5 5 H 1.48504 * 109.46722 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47405 * 119.99766 * 3 2 1 7 7 C 1.37880 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00404 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.40903 * 32.78087 * 9 7 2 11 11 C 1.54763 * 110.36443 * 155.05944 * 9 7 2 12 12 C 1.54988 * 102.93652 * 140.73321 * 11 9 7 13 13 N 1.48710 * 103.49064 * 322.90435 * 12 11 9 14 14 C 1.47614 * 105.41915 * 38.51253 * 13 12 11 15 15 C 1.53666 * 110.55897 * 96.23012 * 14 13 12 16 16 C 1.54494 * 102.21192 * 94.44070 * 15 14 13 17 17 C 1.51430 * 105.20955 * 25.74051 * 16 15 14 18 18 C 1.38460 * 130.37649 * 163.23441 * 17 16 15 19 19 C 1.38093 * 120.27335 * 180.02562 * 18 17 16 20 20 C 1.38246 * 119.89672 * 359.90368 * 19 18 17 21 21 C 1.38065 * 119.95363 * 0.03973 * 20 19 18 22 22 C 1.38418 * 109.76550 * 343.15968 * 17 16 15 23 23 H 0.96994 * 119.99493 * 359.97438 * 1 2 3 24 24 H 1.09005 * 110.71844 * 22.37831 * 11 9 7 25 25 H 1.08994 * 110.72797 * 259.09630 * 11 9 7 26 26 H 1.09001 * 110.64432 * 81.44586 * 12 11 9 27 27 H 1.08999 * 110.64951 * 204.35691 * 12 11 9 28 28 H 1.00899 * 111.00368 * 159.00636 * 13 12 11 29 29 H 1.09010 * 110.85032 * 212.61685 * 15 14 13 30 30 H 1.09000 * 110.86237 * 336.25700 * 15 14 13 31 31 H 1.09001 * 110.29904 * 144.67109 * 16 15 14 32 32 H 1.08999 * 110.29334 * 266.70721 * 16 15 14 33 33 H 1.08002 * 119.86129 * 359.92592 * 18 17 16 34 34 H 1.07999 * 120.05010 * 179.97438 * 19 18 17 35 35 H 1.08003 * 120.02183 * 180.02562 * 20 19 18 36 36 H 1.07999 * 119.85361 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.3173 -2.3991 -0.5530 11 6 2.1213 -3.6236 -0.6107 12 6 1.7974 -4.8420 0.2908 13 7 1.6600 -4.2443 1.6456 14 6 0.9728 -2.9546 1.4378 15 6 -0.5383 -3.1042 1.6733 16 6 -0.6814 -2.6853 3.1534 17 6 0.4922 -1.7667 3.4216 18 6 0.7094 -0.8661 4.4506 19 6 1.8726 -0.1229 4.4913 20 6 2.8254 -0.2796 3.5019 21 6 2.6119 -1.1777 2.4753 22 6 1.4458 -1.9242 2.4308 23 1 -0.4849 0.8400 0.0004 24 1 3.1794 -3.3688 -0.5492 25 1 1.8300 -3.8191 -1.6426 26 1 0.8636 -5.3115 -0.0186 27 1 2.6142 -5.5634 0.2701 28 1 1.1275 -4.8473 2.2546 29 1 -1.1005 -2.4329 1.0239 30 1 -0.8530 -4.1379 1.5303 31 1 -1.6205 -2.1535 3.3068 32 1 -0.6336 -3.5611 3.8005 33 1 -0.0346 -0.7432 5.2238 34 1 2.0381 0.5789 5.2953 35 1 3.7360 0.3004 3.5320 36 1 3.3571 -1.2985 1.7030 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260399818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:25 Heat of formation + Delta-G solvation = 18.650268 kcal Electronic energy + Delta-G solvation = -18460.915589 eV Core-core repulsion = 15908.781846 eV Total energy + Delta-G solvation = -2552.133743 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.45177 -38.48088 -35.40454 -34.62731 -31.79662 -31.05538 -29.54151 -28.56775 -26.57168 -23.89502 -23.18705 -21.76800 -21.36862 -20.19498 -18.49907 -17.24947 -16.53862 -16.49743 -15.87615 -15.70833 -15.34969 -14.89924 -14.18326 -13.98933 -13.80000 -13.59029 -13.33674 -13.06061 -12.82019 -12.63100 -12.44051 -12.41544 -12.14228 -11.99325 -11.80027 -11.56883 -11.20059 -11.00079 -10.61309 -10.37868 -9.30411 -9.27473 -8.98963 -8.06422 -6.01443 0.81015 0.92200 1.38211 1.41851 1.44942 2.46296 3.15600 3.28770 3.64543 3.78127 4.00364 4.23454 4.33124 4.43271 4.46188 4.47853 4.51463 4.66506 4.73958 4.90003 4.90760 4.99179 5.07329 5.13300 5.27073 5.30632 5.38087 5.39172 5.55366 5.63520 5.76598 5.83726 5.87905 5.98265 6.22924 6.27582 6.43416 6.52524 6.75343 6.97304 7.54309 9.02033 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.014759 C = 0.010533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.233941 B = 1896.735900 C = 2657.587487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.041 3.959 3 Si 0.908 3.092 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.261 1.261 7 C -0.493 4.493 8 H 0.049 0.951 9 C 0.036 3.964 10 H 0.025 0.975 11 C -0.120 4.120 12 C 0.046 3.954 13 N -0.664 5.664 14 C 0.139 3.861 15 C -0.130 4.130 16 C -0.067 4.067 17 C -0.130 4.130 18 C -0.135 4.135 19 C -0.138 4.138 20 C -0.163 4.163 21 C -0.070 4.070 22 C -0.014 4.014 23 H 0.254 0.746 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.335 0.665 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.119 0.881 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.507 -6.021 5.976 8.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.185 1.185 7 C -0.531 4.531 8 H 0.067 0.933 9 C 0.017 3.983 10 H 0.043 0.957 11 C -0.159 4.159 12 C -0.083 4.083 13 N -0.293 5.293 14 C 0.048 3.952 15 C -0.169 4.169 16 C -0.104 4.104 17 C -0.130 4.130 18 C -0.153 4.153 19 C -0.156 4.156 20 C -0.181 4.181 21 C -0.089 4.089 22 C -0.014 4.014 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.106 0.894 28 H 0.152 0.848 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.147 0.853 34 H 0.155 0.845 35 H 0.137 0.863 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.043 -5.660 6.031 8.336 hybrid contribution -0.601 1.183 -0.595 1.454 sum 0.442 -4.477 5.436 7.056 Atomic orbital electron populations 1.69978 1.06679 1.26389 1.51331 1.25247 0.95088 1.00535 0.95041 0.86348 0.79336 0.81615 0.79173 1.20135 1.22096 1.18545 1.21086 0.92184 0.91048 1.48739 0.93270 1.19594 0.95209 0.92984 0.90517 0.95698 1.22641 0.99949 0.95345 0.97917 1.23015 1.00204 0.96308 0.88779 1.62999 1.51293 1.03860 1.11160 1.20879 0.90125 0.88011 0.96161 1.22789 0.97040 1.00662 0.96433 1.20952 0.95496 0.97692 0.96245 1.20965 0.97566 0.98583 0.95894 1.20628 0.98334 0.97545 0.98819 1.21074 0.94347 1.00627 0.99542 1.21161 1.00358 1.00703 0.95871 1.20872 0.97747 0.94946 0.95297 1.19897 0.93024 0.95365 0.93152 0.93686 0.92922 0.92312 0.93768 0.89389 0.84797 0.92431 0.90397 0.91494 0.89167 0.85344 0.84492 0.86285 0.87379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.05 12.95 21.45 0.28 -50.77 16 2 C 0.04 2.21 4.59 84.65 0.39 2.59 16 3 Si 0.91 43.51 29.33 68.60 2.01 45.52 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.49 -25.64 4.88 25.60 0.12 -25.52 16 8 H 0.05 2.60 6.25 -2.91 -0.02 2.58 16 9 C 0.04 1.72 2.56 -10.84 -0.03 1.69 16 10 H 0.02 1.33 6.85 -2.38 -0.02 1.31 16 11 C -0.12 -4.80 6.61 31.88 0.21 -4.59 16 12 C 0.05 1.50 7.54 86.63 0.65 2.15 16 13 N -0.66 -23.96 7.08 -462.88 -3.28 -27.24 16 14 C 0.14 5.84 0.97 2.98 0.00 5.84 16 15 C -0.13 -5.03 5.94 31.33 0.19 -4.85 16 16 C -0.07 -2.35 6.78 30.59 0.21 -2.15 16 17 C -0.13 -5.29 6.15 -19.54 -0.12 -5.41 16 18 C -0.14 -5.04 10.03 22.29 0.22 -4.82 16 19 C -0.14 -5.05 10.05 22.24 0.22 -4.83 16 20 C -0.16 -6.61 10.04 22.23 0.22 -6.38 16 21 C -0.07 -3.19 7.46 22.30 0.17 -3.02 16 22 C -0.01 -0.61 4.51 -19.75 -0.09 -0.70 16 23 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 24 H 0.05 2.17 7.71 -2.38 -0.02 2.15 16 25 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.34 10.43 8.31 -89.69 -0.75 9.69 16 29 H 0.06 2.63 7.58 -2.38 -0.02 2.61 16 30 H 0.08 2.53 7.89 -2.39 -0.02 2.51 16 31 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.09 2.63 8.14 -2.39 -0.02 2.62 16 33 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 34 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 35 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 36 H 0.11 5.18 5.68 -2.91 -0.02 5.16 16 Total: -1.00 -58.98 282.24 1.72 -57.26 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.33 Total: 25.20 kcal Atomic # 6 Polarization: -52.36 SS G_CDS: 2.37 Total: -49.98 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -3.00 Total: -78.01 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.01 Total: 45.52 kcal Total: -58.98 1.72 -57.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260399818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.914 kcal (2) G-P(sol) polarization free energy of solvation -58.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds