Wall clock time and date at job start Mon Mar 30 2020 05:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99793 * 2 1 4 4 H 1.48496 * 109.47146 * 270.00289 * 3 2 1 5 5 H 1.48499 * 109.46924 * 30.00013 * 3 2 1 6 6 H 1.48496 * 109.47229 * 150.00125 * 3 2 1 7 7 C 1.37878 * 120.00399 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99972 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99815 * 0.02562 * 7 2 1 10 10 H 1.08995 * 110.32106 * 2.85849 * 9 7 2 11 11 C 1.54767 * 110.36420 * 125.08949 * 9 7 2 12 12 C 1.54995 * 102.94198 * 140.76419 * 11 9 7 13 13 N 1.48704 * 103.48623 * 322.90389 * 12 11 9 14 14 C 1.47591 * 105.44486 * 38.47367 * 13 12 11 15 15 C 1.53665 * 110.60428 * 214.30274 * 14 13 12 16 16 C 1.54491 * 102.23098 * 265.44740 * 15 14 13 17 17 C 1.51428 * 105.20842 * 334.30544 * 16 15 14 18 18 C 1.38457 * 130.38016 * 196.77157 * 17 16 15 19 19 C 1.38094 * 120.28426 * 180.15318 * 18 17 16 20 20 C 1.38249 * 119.89234 * 359.97438 * 19 18 17 21 21 C 1.38072 * 119.95017 * 359.97438 * 20 19 18 22 22 C 1.38408 * 109.77499 * 16.87193 * 17 16 15 23 23 H 0.96998 * 120.00506 * 359.97438 * 1 2 3 24 24 H 1.09002 * 110.72284 * 22.39610 * 11 9 7 25 25 H 1.09002 * 110.72077 * 259.12817 * 11 9 7 26 26 H 1.08996 * 110.64251 * 81.45069 * 12 11 9 27 27 H 1.08993 * 110.64415 * 204.35772 * 12 11 9 28 28 H 1.00902 * 110.99292 * 158.98169 * 13 12 11 29 29 H 1.09001 * 110.85394 * 23.63475 * 15 14 13 30 30 H 1.09002 * 110.85161 * 147.26686 * 15 14 13 31 31 H 1.09005 * 110.29635 * 215.37180 * 16 15 14 32 32 H 1.09002 * 110.37569 * 93.27791 * 16 15 14 33 33 H 1.08002 * 119.85425 * 0.13552 * 18 17 16 34 34 H 1.07995 * 120.05493 * 179.97438 * 19 18 17 35 35 H 1.07998 * 120.02748 * 180.02562 * 20 19 18 36 36 H 1.07995 * 119.85516 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.1778 -2.3165 -0.0530 11 6 1.7047 -3.3818 -1.1894 12 6 1.7320 -4.8042 -0.5742 13 7 2.2288 -4.5745 0.8085 14 6 1.5967 -3.3158 1.2492 15 6 2.5456 -2.5254 2.1636 16 6 2.0960 -2.9773 3.5709 17 6 0.6487 -3.3931 3.4111 18 6 -0.3394 -3.5859 4.3616 19 6 -1.6079 -3.9746 3.9785 20 6 -1.8934 -4.1717 2.6402 21 6 -0.9103 -3.9792 1.6900 22 6 0.3633 -3.5900 2.0711 23 1 -0.4851 0.8400 0.0004 24 1 2.6981 -3.0896 -1.5298 25 1 0.9849 -3.3287 -2.0062 26 1 0.7307 -5.2344 -0.5564 27 1 2.4161 -5.4485 -1.1263 28 1 1.9773 -5.3408 1.4149 29 1 3.5832 -2.8039 1.9797 30 1 2.4025 -1.4523 2.0367 31 1 2.1762 -2.1508 4.2770 32 1 2.6969 -3.8218 3.9083 33 1 -0.1169 -3.4320 5.4072 34 1 -2.3757 -4.1243 4.7230 35 1 -2.8848 -4.4753 2.3381 36 1 -1.1351 -4.1332 0.6450 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260399829.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:28 Heat of formation + Delta-G solvation = 25.780049 kcal Electronic energy + Delta-G solvation = -18030.849601 eV Core-core repulsion = 15479.025029 eV Total energy + Delta-G solvation = -2551.824572 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.04362 -37.07538 -33.85878 -32.79880 -30.48348 -29.34937 -28.36110 -27.13417 -24.48366 -22.38669 -21.91556 -20.41461 -19.97793 -18.45978 -16.31047 -16.08501 -14.99224 -14.71205 -14.40872 -14.32762 -13.92599 -13.68525 -12.73552 -12.39093 -12.22886 -12.12844 -11.78485 -11.55713 -11.02372 -10.99276 -10.84940 -10.78154 -10.50500 -10.32483 -10.14590 -9.97240 -9.47753 -9.10131 -8.92324 -8.48071 -8.25046 -8.06310 -7.65926 -6.03051 -4.01166 1.92466 1.94952 3.29417 3.37146 3.39853 4.29721 4.41645 5.04914 5.16816 5.23905 5.38207 5.44567 5.53581 5.84103 5.86313 5.92813 6.04517 6.06527 6.11770 6.24327 6.27139 6.47428 6.53416 6.63958 6.79046 6.90846 6.95823 7.00341 7.01022 7.13387 7.26667 7.38699 7.49034 7.57201 7.68130 7.84215 7.99084 8.12068 8.46279 9.05704 9.56597 11.05650 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.020833 B = 0.010016 C = 0.008778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.725514 B = 2794.732588 C = 3188.938930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.496 4.496 8 H 0.059 0.941 9 C 0.036 3.964 10 H 0.075 0.925 11 C -0.119 4.119 12 C 0.033 3.967 13 N -0.653 5.653 14 C 0.134 3.866 15 C -0.089 4.089 16 C -0.088 4.088 17 C -0.091 4.091 18 C -0.119 4.119 19 C -0.130 4.130 20 C -0.129 4.129 21 C -0.095 4.095 22 C -0.084 4.084 23 H 0.261 0.739 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.027 0.973 27 H 0.063 0.937 28 H 0.320 0.680 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.455 -7.593 5.026 9.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.713 3.287 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.534 4.534 8 H 0.077 0.923 9 C 0.016 3.984 10 H 0.093 0.907 11 C -0.157 4.157 12 C -0.096 4.096 13 N -0.280 5.280 14 C 0.044 3.956 15 C -0.127 4.127 16 C -0.125 4.125 17 C -0.091 4.091 18 C -0.137 4.137 19 C -0.149 4.149 20 C -0.147 4.147 21 C -0.114 4.114 22 C -0.086 4.086 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.134 0.866 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.076 -7.186 4.837 8.663 hybrid contribution -0.777 0.609 0.214 1.011 sum -0.702 -6.577 5.051 8.323 Atomic orbital electron populations 1.69891 1.05939 1.26609 1.50284 1.25003 0.94828 0.99135 0.94842 0.86690 0.80052 0.83726 0.78191 1.20677 1.21312 1.19620 1.20967 0.92924 0.89836 1.49637 0.92323 1.19788 0.99744 0.92153 0.86683 0.90698 1.22761 1.00873 0.92851 0.99228 1.23068 0.96679 0.98817 0.91018 1.63345 1.57365 1.04415 1.02841 1.21146 0.87513 0.89919 0.97052 1.22427 0.98100 1.02648 0.89525 1.21260 0.91189 0.99798 1.00292 1.20816 0.96022 0.98382 0.93921 1.20515 0.92978 1.01755 0.98440 1.20846 0.96295 1.01842 0.95885 1.20898 0.98631 1.02029 0.93185 1.20603 0.92272 0.99420 0.99088 1.21265 0.95481 0.96461 0.95354 0.92904 0.91933 0.93273 0.95488 0.91849 0.86594 0.91388 0.87474 0.91791 0.91559 0.87173 0.86814 0.86761 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 12.64 55.43 0.70 -24.65 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.50 -12.99 5.40 -34.44 -0.19 -13.17 16 8 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16 9 C 0.04 0.86 2.86 -90.67 -0.26 0.60 16 10 H 0.07 2.03 6.03 -51.93 -0.31 1.72 16 11 C -0.12 -2.54 6.61 -24.75 -0.16 -2.70 16 12 C 0.03 0.61 7.55 -1.77 -0.01 0.60 16 13 N -0.65 -12.46 7.06 -97.66 -0.69 -13.15 16 14 C 0.13 2.84 0.97 -131.84 -0.13 2.72 16 15 C -0.09 -1.87 5.44 -25.60 -0.14 -2.00 16 16 C -0.09 -1.59 6.78 -26.74 -0.18 -1.77 16 17 C -0.09 -1.74 6.15 -104.12 -0.64 -2.38 16 18 C -0.12 -2.02 10.03 -39.55 -0.40 -2.41 16 19 C -0.13 -2.09 10.05 -39.63 -0.40 -2.49 16 20 C -0.13 -2.19 10.04 -39.64 -0.40 -2.59 16 21 C -0.10 -1.85 9.36 -39.54 -0.37 -2.22 16 22 C -0.08 -1.72 4.85 -104.44 -0.51 -2.23 16 23 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.06 1.37 7.86 -51.93 -0.41 0.96 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.32 5.63 8.44 -39.29 -0.33 5.30 16 29 H 0.07 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.11 2.54 5.91 -51.93 -0.31 2.23 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.11 2.16 7.99 -52.49 -0.42 1.74 16 LS Contribution 287.19 15.07 4.33 4.33 Total: -1.00 -27.96 287.19 -9.67 -37.64 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.11 Total: 8.37 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: -3.88 Total: -28.41 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.01 Total: -37.79 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.96 -9.67 -37.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260399829.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.419 kcal (2) G-P(sol) polarization free energy of solvation -27.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds