Wall clock time and date at job start Mon Mar 30 2020 05:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99793 * 2 1 4 4 H 1.48496 * 109.47146 * 270.00289 * 3 2 1 5 5 H 1.48499 * 109.46924 * 30.00013 * 3 2 1 6 6 H 1.48496 * 109.47229 * 150.00125 * 3 2 1 7 7 C 1.37878 * 120.00399 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99972 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99815 * 0.02562 * 7 2 1 10 10 H 1.08995 * 110.32106 * 2.85849 * 9 7 2 11 11 C 1.54767 * 110.36420 * 125.08949 * 9 7 2 12 12 C 1.54995 * 102.94198 * 140.76419 * 11 9 7 13 13 N 1.48704 * 103.48623 * 322.90389 * 12 11 9 14 14 C 1.47591 * 105.44486 * 38.47367 * 13 12 11 15 15 C 1.53665 * 110.60428 * 214.30274 * 14 13 12 16 16 C 1.54491 * 102.23098 * 265.44740 * 15 14 13 17 17 C 1.51428 * 105.20842 * 334.30544 * 16 15 14 18 18 C 1.38457 * 130.38016 * 196.77157 * 17 16 15 19 19 C 1.38094 * 120.28426 * 180.15318 * 18 17 16 20 20 C 1.38249 * 119.89234 * 359.97438 * 19 18 17 21 21 C 1.38072 * 119.95017 * 359.97438 * 20 19 18 22 22 C 1.38408 * 109.77499 * 16.87193 * 17 16 15 23 23 H 0.96998 * 120.00506 * 359.97438 * 1 2 3 24 24 H 1.09002 * 110.72284 * 22.39610 * 11 9 7 25 25 H 1.09002 * 110.72077 * 259.12817 * 11 9 7 26 26 H 1.08996 * 110.64251 * 81.45069 * 12 11 9 27 27 H 1.08993 * 110.64415 * 204.35772 * 12 11 9 28 28 H 1.00902 * 110.99292 * 158.98169 * 13 12 11 29 29 H 1.09001 * 110.85394 * 23.63475 * 15 14 13 30 30 H 1.09002 * 110.85161 * 147.26686 * 15 14 13 31 31 H 1.09005 * 110.29635 * 215.37180 * 16 15 14 32 32 H 1.09002 * 110.37569 * 93.27791 * 16 15 14 33 33 H 1.08002 * 119.85425 * 0.13552 * 18 17 16 34 34 H 1.07995 * 120.05493 * 179.97438 * 19 18 17 35 35 H 1.07998 * 120.02748 * 180.02562 * 20 19 18 36 36 H 1.07995 * 119.85516 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.1778 -2.3165 -0.0530 11 6 1.7047 -3.3818 -1.1894 12 6 1.7320 -4.8042 -0.5742 13 7 2.2288 -4.5745 0.8085 14 6 1.5967 -3.3158 1.2492 15 6 2.5456 -2.5254 2.1636 16 6 2.0960 -2.9773 3.5709 17 6 0.6487 -3.3931 3.4111 18 6 -0.3394 -3.5859 4.3616 19 6 -1.6079 -3.9746 3.9785 20 6 -1.8934 -4.1717 2.6402 21 6 -0.9103 -3.9792 1.6900 22 6 0.3633 -3.5900 2.0711 23 1 -0.4851 0.8400 0.0004 24 1 2.6981 -3.0896 -1.5298 25 1 0.9849 -3.3287 -2.0062 26 1 0.7307 -5.2344 -0.5564 27 1 2.4161 -5.4485 -1.1263 28 1 1.9773 -5.3408 1.4149 29 1 3.5832 -2.8039 1.9797 30 1 2.4025 -1.4523 2.0367 31 1 2.1762 -2.1508 4.2770 32 1 2.6969 -3.8218 3.9083 33 1 -0.1169 -3.4320 5.4072 34 1 -2.3757 -4.1243 4.7230 35 1 -2.8848 -4.4753 2.3381 36 1 -1.1351 -4.1332 0.6450 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260399829.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:28 Heat of formation + Delta-G solvation = 9.941551 kcal Electronic energy + Delta-G solvation = -18031.536410 eV Core-core repulsion = 15479.025029 eV Total energy + Delta-G solvation = -2552.511381 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.55268 -38.58173 -35.34130 -34.78660 -31.87905 -31.17064 -29.83525 -28.67680 -26.38561 -23.98114 -23.35443 -21.89836 -21.56984 -20.15419 -18.08492 -17.81253 -16.55409 -16.31635 -16.01860 -15.82795 -15.36564 -15.27298 -14.19467 -14.02739 -13.95110 -13.69794 -13.41825 -13.12023 -12.77534 -12.65779 -12.47421 -12.35923 -12.29641 -11.94297 -11.70137 -11.57435 -11.20621 -10.93124 -10.83035 -10.50619 -9.69061 -9.49961 -9.13762 -8.09377 -6.11354 0.55232 0.56959 1.39868 1.41835 1.51215 2.43819 2.91375 3.19124 3.55201 3.73596 3.89773 4.20947 4.23238 4.24272 4.35761 4.44012 4.56495 4.64152 4.70662 4.77547 4.82187 4.93919 5.05779 5.16582 5.24392 5.27432 5.34654 5.43604 5.57280 5.63653 5.64988 5.67722 5.79257 5.85581 5.93172 6.19025 6.24626 6.44487 6.65453 7.00068 7.48028 8.99352 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.020833 B = 0.010016 C = 0.008778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.725514 B = 2794.732588 C = 3188.938930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.943 3.057 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.494 4.494 8 H 0.052 0.948 9 C 0.027 3.973 10 H 0.038 0.962 11 C -0.120 4.120 12 C 0.044 3.956 13 N -0.651 5.651 14 C 0.139 3.861 15 C -0.091 4.091 16 C -0.079 4.079 17 C -0.109 4.109 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.132 4.132 21 C -0.118 4.118 22 C -0.113 4.113 23 H 0.258 0.742 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.034 0.966 27 H 0.089 0.911 28 H 0.331 0.669 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.140 0.860 34 H 0.152 0.848 35 H 0.141 0.859 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.369 -8.701 6.694 10.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.184 4.184 3 Si 0.769 3.231 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.532 4.532 8 H 0.071 0.929 9 C 0.008 3.992 10 H 0.057 0.943 11 C -0.158 4.158 12 C -0.085 4.085 13 N -0.278 5.278 14 C 0.048 3.952 15 C -0.129 4.129 16 C -0.116 4.116 17 C -0.110 4.110 18 C -0.138 4.138 19 C -0.142 4.142 20 C -0.149 4.149 21 C -0.137 4.137 22 C -0.114 4.114 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.108 0.892 28 H 0.147 0.853 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.158 0.842 34 H 0.170 0.830 35 H 0.158 0.842 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.180 -8.309 6.504 10.553 hybrid contribution -0.842 0.901 -0.310 1.272 sum -0.662 -7.408 6.195 9.679 Atomic orbital electron populations 1.70033 1.07289 1.26934 1.52373 1.25660 0.95464 1.02139 0.95110 0.85782 0.79106 0.80073 0.78175 1.20371 1.21415 1.18729 1.21188 0.92659 0.91077 1.48281 0.92946 1.19728 0.97307 0.92591 0.89616 0.94323 1.22671 1.00071 0.94655 0.98415 1.23019 0.97900 0.97036 0.90580 1.63310 1.57137 1.04120 1.03272 1.20895 0.88443 0.90239 0.95651 1.22253 0.98239 1.00481 0.91948 1.21171 0.91115 1.00909 0.98376 1.21055 0.96976 0.99098 0.93855 1.20909 0.92747 1.00632 0.99548 1.21316 0.96846 0.99864 0.96182 1.21252 0.99146 1.01133 0.93403 1.20722 0.92888 1.00784 0.99281 1.21276 0.95630 0.98429 0.96110 0.93282 0.92727 0.93551 0.94740 0.89239 0.85326 0.91227 0.90956 0.90772 0.89298 0.84217 0.82992 0.84160 0.88154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.71 12.64 21.45 0.27 -54.44 16 2 C 0.01 0.79 5.46 84.66 0.46 1.25 16 3 Si 0.94 43.80 29.54 68.60 2.03 45.83 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.49 -26.66 5.40 25.60 0.14 -26.52 16 8 H 0.05 2.83 7.60 -2.91 -0.02 2.80 16 9 C 0.03 1.35 2.86 -10.82 -0.03 1.32 16 10 H 0.04 2.20 6.03 -2.39 -0.01 2.18 16 11 C -0.12 -5.20 6.61 31.88 0.21 -4.99 16 12 C 0.04 1.56 7.55 86.64 0.65 2.21 16 13 N -0.65 -24.21 7.06 -462.89 -3.27 -27.48 16 14 C 0.14 5.90 0.97 2.99 0.00 5.90 16 15 C -0.09 -3.82 5.44 31.32 0.17 -3.65 16 16 C -0.08 -2.72 6.78 30.59 0.21 -2.51 16 17 C -0.11 -4.01 6.15 -19.54 -0.12 -4.13 16 18 C -0.12 -3.72 10.03 22.29 0.22 -3.50 16 19 C -0.12 -3.55 10.05 22.24 0.22 -3.32 16 20 C -0.13 -4.19 10.04 22.23 0.22 -3.97 16 21 C -0.12 -4.57 9.36 22.30 0.21 -4.36 16 22 C -0.11 -4.60 4.85 -19.75 -0.10 -4.70 16 23 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 24 H 0.05 2.42 7.86 -2.39 -0.02 2.40 16 25 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.33 11.15 8.44 -89.69 -0.76 10.39 16 29 H 0.07 2.80 8.07 -2.39 -0.02 2.78 16 30 H 0.07 3.52 5.91 -2.39 -0.01 3.50 16 31 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 32 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 34 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.10 3.98 7.99 -2.91 -0.02 3.96 16 Total: -1.00 -61.63 287.19 1.82 -59.81 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.31 Total: 27.24 kcal Atomic # 6 Polarization: -53.44 SS G_CDS: 2.48 Total: -50.96 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -3.00 Total: -81.92 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -61.63 1.82 -59.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260399829.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.753 kcal (2) G-P(sol) polarization free energy of solvation -61.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds