Wall clock time and date at job start Mon Mar 30 2020 05:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.08997 * 110.32128 * 60.49207 * 9 7 2 11 11 C 1.54770 * 110.36016 * 298.26647 * 9 7 2 12 12 C 1.55006 * 102.93583 * 219.23731 * 11 9 7 13 13 N 1.48707 * 103.34175 * 37.00093 * 12 11 9 14 14 C 1.47157 * 105.66273 * 321.51673 * 13 12 11 15 15 C 1.53669 * 110.64892 * 263.75498 * 14 13 12 16 16 C 1.54494 * 102.21720 * 213.64761 * 15 14 13 17 17 C 1.51436 * 105.20254 * 25.73753 * 16 15 14 18 18 C 1.38456 * 130.37219 * 163.22219 * 17 16 15 19 19 C 1.38091 * 120.27298 * 179.97438 * 18 17 16 20 20 C 1.38252 * 119.90164 * 0.02562 * 19 18 17 21 21 C 1.38070 * 119.94727 * 359.97438 * 20 19 18 22 22 C 1.38399 * 109.77432 * 343.17068 * 17 16 15 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.08999 * 110.72760 * 337.59675 * 11 9 7 25 25 H 1.08996 * 110.72350 * 100.69877 * 11 9 7 26 26 H 1.08996 * 110.64575 * 155.47007 * 12 11 9 27 27 H 1.09003 * 110.63899 * 278.54206 * 12 11 9 28 28 H 1.00892 * 111.00493 * 201.09749 * 13 12 11 29 29 H 1.09002 * 110.85382 * 331.83128 * 15 14 13 30 30 H 1.09006 * 110.85529 * 95.46854 * 15 14 13 31 31 H 1.09003 * 110.29936 * 144.66480 * 16 15 14 32 32 H 1.09000 * 110.29939 * 266.71272 * 16 15 14 33 33 H 1.07994 * 119.85743 * 359.96991 * 18 17 16 34 34 H 1.08006 * 120.04805 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.02719 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.85750 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.8864 -0.6932 0.8983 11 6 4.0554 -0.5033 -1.2680 12 6 5.2747 -1.3826 -1.6459 13 7 4.8225 -2.7589 -1.3103 14 6 4.0455 -2.6297 -0.0673 15 6 4.9231 -2.9408 1.1552 16 6 3.9147 -3.6001 2.1223 17 6 2.8384 -4.1878 1.2339 18 6 1.8686 -5.1371 1.5081 19 6 0.9783 -5.5263 0.5269 20 6 1.0552 -4.9666 -0.7349 21 6 2.0213 -4.0197 -1.0111 22 6 2.9152 -3.6262 -0.0287 23 1 -0.4849 0.8400 0.0004 24 1 3.3093 -0.5167 -2.0625 25 1 4.3661 0.5184 -1.0498 26 1 5.4937 -1.2988 -2.7103 27 1 6.1455 -1.1083 -1.0504 28 1 5.6095 -3.3770 -1.1821 29 1 5.7209 -3.6358 0.8933 30 1 5.3300 -2.0249 1.5839 31 1 4.4018 -4.3875 2.6975 32 1 3.4883 -2.8526 2.7913 33 1 1.8083 -5.5751 2.4934 34 1 0.2234 -6.2675 0.7446 35 1 0.3602 -5.2698 -1.5040 36 1 2.0799 -3.5830 -1.9973 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260399847.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:31 Heat of formation + Delta-G solvation = 38.340293 kcal Electronic energy + Delta-G solvation = -18177.663942 eV Core-core repulsion = 15626.384023 eV Total energy + Delta-G solvation = -2551.279919 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.21315 -37.21252 -33.96651 -32.64108 -30.46687 -29.91432 -28.30682 -27.31843 -24.47133 -22.24169 -21.89259 -20.54840 -20.30477 -18.54454 -16.63586 -16.13226 -14.89150 -14.76952 -14.61391 -14.26576 -13.91633 -13.47192 -12.83442 -12.60040 -12.45685 -12.16087 -11.87560 -11.55753 -11.43960 -11.25914 -11.04679 -10.68075 -10.56750 -10.45629 -10.15416 -9.97024 -9.84929 -9.39027 -8.94245 -8.50274 -7.98130 -7.88767 -7.59010 -5.98178 -3.97166 2.17249 2.24862 3.29354 3.37358 3.38768 4.45579 4.54377 4.80355 5.03759 5.21040 5.30205 5.41104 5.63607 5.68195 5.76591 5.80091 5.83059 5.91806 5.97789 6.12152 6.22265 6.27669 6.34503 6.44530 6.50928 6.68118 6.71727 6.78833 6.90267 7.01368 7.12229 7.21151 7.31664 7.50201 7.64748 7.77991 7.82605 7.94765 8.60692 9.11494 9.62545 11.13075 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.020877 B = 0.011554 C = 0.009341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.865996 B = 2422.745090 C = 2996.788189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.871 3.129 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.508 4.508 8 H 0.098 0.902 9 C 0.022 3.978 10 H 0.033 0.967 11 C -0.134 4.134 12 C 0.040 3.960 13 N -0.657 5.657 14 C 0.145 3.855 15 C -0.140 4.140 16 C -0.070 4.070 17 C -0.111 4.111 18 C -0.116 4.116 19 C -0.134 4.134 20 C -0.130 4.130 21 C -0.068 4.068 22 C -0.009 4.009 23 H 0.261 0.739 24 H 0.077 0.923 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.030 0.970 28 H 0.325 0.675 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.602 -7.001 0.756 11.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.128 4.128 3 Si 0.700 3.300 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.546 4.546 8 H 0.115 0.885 9 C 0.003 3.997 10 H 0.051 0.949 11 C -0.172 4.172 12 C -0.089 4.089 13 N -0.285 5.285 14 C 0.054 3.946 15 C -0.179 4.179 16 C -0.107 4.107 17 C -0.111 4.111 18 C -0.134 4.134 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.086 4.086 22 C -0.009 4.009 23 H 0.071 0.929 24 H 0.096 0.904 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.048 0.952 28 H 0.141 0.859 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.882 -6.911 0.267 10.486 hybrid contribution 0.952 1.353 0.688 1.792 sum 8.833 -5.558 0.954 10.480 Atomic orbital electron populations 1.69898 1.06117 1.26527 1.51210 1.24970 0.94565 0.98438 0.94836 0.87076 0.80029 0.84578 0.78321 1.20423 1.22230 1.19370 1.21422 0.88007 0.95342 1.49781 0.88460 1.19948 0.98008 0.88482 0.93253 0.94861 1.23065 0.96276 0.96738 1.01104 1.23021 0.96640 0.89615 0.99633 1.62882 1.24043 1.08871 1.32675 1.20725 0.90645 0.96422 0.86782 1.22963 0.97301 1.00277 0.97404 1.20881 0.94002 0.98906 0.96949 1.20452 0.97675 0.97220 0.95776 1.20321 0.95924 0.98560 0.98574 1.20768 0.99339 1.01294 0.93810 1.20895 0.98786 0.98309 0.96782 1.20477 0.93425 0.95289 0.99449 1.19742 0.95305 0.92915 0.92969 0.92883 0.90428 0.93354 0.91220 0.95198 0.85917 0.91883 0.90958 0.91962 0.90216 0.87510 0.87097 0.86943 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 2 C 0.07 2.08 5.46 -17.82 -0.10 1.98 16 3 Si 0.87 21.59 24.71 -169.99 -4.20 17.39 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.27 -6.35 6.35 56.52 0.36 -5.99 16 7 C -0.51 -13.86 8.31 -34.44 -0.29 -14.14 16 8 H 0.10 2.86 4.74 -52.49 -0.25 2.61 16 9 C 0.02 0.51 2.07 -90.66 -0.19 0.33 16 10 H 0.03 0.79 6.46 -51.93 -0.34 0.45 16 11 C -0.13 -2.83 4.78 -24.74 -0.12 -2.95 16 12 C 0.04 0.69 7.56 -1.76 -0.01 0.67 16 13 N -0.66 -11.65 7.06 -97.93 -0.69 -12.34 16 14 C 0.15 2.85 0.96 -132.07 -0.13 2.73 16 15 C -0.14 -2.33 6.19 -25.60 -0.16 -2.49 16 16 C -0.07 -1.18 6.78 -26.74 -0.18 -1.36 16 17 C -0.11 -2.14 6.15 -104.12 -0.64 -2.78 16 18 C -0.12 -2.08 10.03 -39.56 -0.40 -2.48 16 19 C -0.13 -2.36 10.05 -39.63 -0.40 -2.76 16 20 C -0.13 -2.44 10.04 -39.64 -0.40 -2.84 16 21 C -0.07 -1.43 8.36 -39.54 -0.33 -1.76 16 22 C -0.01 -0.18 3.24 -104.44 -0.34 -0.52 16 23 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.08 1.79 7.85 -51.93 -0.41 1.38 16 25 H 0.05 1.00 5.95 -51.93 -0.31 0.69 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.33 4.92 8.06 -39.30 -0.32 4.61 16 29 H 0.06 0.90 7.54 -51.93 -0.39 0.51 16 30 H 0.07 1.17 7.45 -51.93 -0.39 0.78 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 35 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.12 2.52 8.06 -52.48 -0.42 2.10 16 LS Contribution 277.43 15.07 4.18 4.18 Total: -1.00 -30.30 277.43 -8.57 -38.86 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.96 Total: 6.95 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -3.67 Total: -28.36 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.08 Total: -39.02 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.20 Total: 17.39 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.30 -8.57 -38.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260399847.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.203 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds