Wall clock time and date at job start Mon Mar 30 2020 05:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.08997 * 110.32128 * 60.49207 * 9 7 2 11 11 C 1.54770 * 110.36016 * 298.26647 * 9 7 2 12 12 C 1.55006 * 102.93583 * 219.23731 * 11 9 7 13 13 N 1.48707 * 103.34175 * 37.00093 * 12 11 9 14 14 C 1.47157 * 105.66273 * 321.51673 * 13 12 11 15 15 C 1.53669 * 110.64892 * 263.75498 * 14 13 12 16 16 C 1.54494 * 102.21720 * 213.64761 * 15 14 13 17 17 C 1.51436 * 105.20254 * 25.73753 * 16 15 14 18 18 C 1.38456 * 130.37219 * 163.22219 * 17 16 15 19 19 C 1.38091 * 120.27298 * 179.97438 * 18 17 16 20 20 C 1.38252 * 119.90164 * 0.02562 * 19 18 17 21 21 C 1.38070 * 119.94727 * 359.97438 * 20 19 18 22 22 C 1.38399 * 109.77432 * 343.17068 * 17 16 15 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.08999 * 110.72760 * 337.59675 * 11 9 7 25 25 H 1.08996 * 110.72350 * 100.69877 * 11 9 7 26 26 H 1.08996 * 110.64575 * 155.47007 * 12 11 9 27 27 H 1.09003 * 110.63899 * 278.54206 * 12 11 9 28 28 H 1.00892 * 111.00493 * 201.09749 * 13 12 11 29 29 H 1.09002 * 110.85382 * 331.83128 * 15 14 13 30 30 H 1.09006 * 110.85529 * 95.46854 * 15 14 13 31 31 H 1.09003 * 110.29936 * 144.66480 * 16 15 14 32 32 H 1.09000 * 110.29939 * 266.71272 * 16 15 14 33 33 H 1.07994 * 119.85743 * 359.96991 * 18 17 16 34 34 H 1.08006 * 120.04805 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.02719 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.85750 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.8864 -0.6932 0.8983 11 6 4.0554 -0.5033 -1.2680 12 6 5.2747 -1.3826 -1.6459 13 7 4.8225 -2.7589 -1.3103 14 6 4.0455 -2.6297 -0.0673 15 6 4.9231 -2.9408 1.1552 16 6 3.9147 -3.6001 2.1223 17 6 2.8384 -4.1878 1.2339 18 6 1.8686 -5.1371 1.5081 19 6 0.9783 -5.5263 0.5269 20 6 1.0552 -4.9666 -0.7349 21 6 2.0213 -4.0197 -1.0111 22 6 2.9152 -3.6262 -0.0287 23 1 -0.4849 0.8400 0.0004 24 1 3.3093 -0.5167 -2.0625 25 1 4.3661 0.5184 -1.0498 26 1 5.4937 -1.2988 -2.7103 27 1 6.1455 -1.1083 -1.0504 28 1 5.6095 -3.3770 -1.1821 29 1 5.7209 -3.6358 0.8933 30 1 5.3300 -2.0249 1.5839 31 1 4.4018 -4.3875 2.6975 32 1 3.4883 -2.8526 2.7913 33 1 1.8083 -5.5751 2.4934 34 1 0.2234 -6.2675 0.7446 35 1 0.3602 -5.2698 -1.5040 36 1 2.0799 -3.5830 -1.9973 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260399847.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:31 Heat of formation + Delta-G solvation = 18.612240 kcal Electronic energy + Delta-G solvation = -18178.519415 eV Core-core repulsion = 15626.384023 eV Total energy + Delta-G solvation = -2552.135392 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.68567 -38.69304 -35.42334 -34.63512 -31.94607 -31.70203 -29.70784 -28.82527 -26.29461 -23.74610 -23.37804 -22.15979 -21.73319 -20.13442 -18.62474 -17.65442 -16.42225 -16.29162 -16.16980 -15.73793 -15.59689 -14.99119 -14.71574 -14.14439 -14.02835 -13.57790 -13.36774 -13.14588 -13.04949 -12.79469 -12.53421 -12.34405 -12.19827 -11.98095 -11.76072 -11.70351 -11.42885 -11.11671 -10.85986 -10.65151 -9.40059 -9.30171 -9.10200 -8.15742 -6.17814 0.70144 0.77123 1.31492 1.33497 1.41852 2.38208 3.06541 3.15288 3.43936 3.65159 3.81375 4.04065 4.27968 4.30182 4.32085 4.37738 4.40119 4.49935 4.57444 4.78082 4.83662 4.88828 4.95225 4.98237 5.04785 5.15370 5.20383 5.27966 5.36590 5.47828 5.52814 5.73427 5.76253 5.83116 5.99987 6.14130 6.36932 6.46553 6.70596 6.93813 7.44928 8.97950 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.020877 B = 0.011554 C = 0.009341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.865996 B = 2422.745090 C = 2996.788189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.011 3.989 3 Si 0.929 3.071 4 H -0.272 1.272 5 H -0.302 1.302 6 H -0.246 1.246 7 C -0.499 4.499 8 H 0.068 0.932 9 C 0.015 3.985 10 H 0.031 0.969 11 C -0.136 4.136 12 C 0.050 3.950 13 N -0.665 5.665 14 C 0.143 3.857 15 C -0.133 4.133 16 C -0.069 4.069 17 C -0.127 4.127 18 C -0.122 4.122 19 C -0.136 4.136 20 C -0.143 4.143 21 C -0.097 4.097 22 C -0.034 4.034 23 H 0.259 0.741 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.343 0.657 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.128 0.872 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.208 -7.683 1.631 13.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.184 4.184 3 Si 0.756 3.244 4 H -0.197 1.197 5 H -0.230 1.230 6 H -0.170 1.170 7 C -0.537 4.537 8 H 0.086 0.914 9 C -0.004 4.004 10 H 0.049 0.951 11 C -0.175 4.175 12 C -0.078 4.078 13 N -0.295 5.295 14 C 0.052 3.948 15 C -0.172 4.172 16 C -0.106 4.106 17 C -0.128 4.128 18 C -0.140 4.140 19 C -0.154 4.154 20 C -0.161 4.161 21 C -0.115 4.115 22 C -0.035 4.035 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.076 0.924 28 H 0.161 0.839 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.146 0.854 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.532 -7.609 1.139 13.043 hybrid contribution 0.064 1.449 0.395 1.503 sum 10.596 -6.161 1.534 12.353 Atomic orbital electron populations 1.70059 1.08025 1.27158 1.54203 1.25759 0.95195 1.02204 0.95283 0.86124 0.79515 0.80109 0.78693 1.19724 1.22956 1.16962 1.21759 0.90671 0.94084 1.47160 0.91396 1.19925 0.95074 0.91496 0.93910 0.95111 1.22934 0.97474 0.97856 0.99206 1.22990 0.95416 0.88170 1.01264 1.62798 1.25008 1.09640 1.32047 1.20640 0.91248 0.93881 0.88995 1.22950 0.97365 1.01314 0.95552 1.20932 0.93520 0.99467 0.96702 1.20912 0.98666 0.97423 0.95762 1.20771 0.95242 0.98056 0.99950 1.21180 0.99781 1.01416 0.93048 1.21195 0.98626 0.98082 0.98183 1.20532 0.95149 0.96810 0.99032 1.20026 0.95971 0.93813 0.93656 0.93221 0.93367 0.92743 0.89437 0.92407 0.83879 0.88910 0.90266 0.88622 0.91477 0.84559 0.83916 0.85392 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.54 13.96 21.45 0.30 -60.24 16 2 C 0.01 0.66 5.46 84.66 0.46 1.12 16 3 Si 0.93 44.95 24.71 68.60 1.70 46.64 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 6 H -0.25 -10.85 6.35 99.48 0.63 -10.22 16 7 C -0.50 -27.85 8.31 25.60 0.21 -27.64 16 8 H 0.07 4.16 4.74 -2.91 -0.01 4.15 16 9 C 0.02 0.69 2.07 -10.82 -0.02 0.67 16 10 H 0.03 1.40 6.46 -2.39 -0.02 1.39 16 11 C -0.14 -5.59 4.78 31.88 0.15 -5.44 16 12 C 0.05 1.58 7.56 86.64 0.66 2.23 16 13 N -0.67 -22.13 7.06 -463.73 -3.27 -25.40 16 14 C 0.14 5.42 0.96 3.08 0.00 5.42 16 15 C -0.13 -3.97 6.19 31.33 0.19 -3.78 16 16 C -0.07 -2.14 6.78 30.59 0.21 -1.94 16 17 C -0.13 -4.75 6.15 -19.54 -0.12 -4.87 16 18 C -0.12 -4.19 10.03 22.29 0.22 -3.97 16 19 C -0.14 -4.65 10.05 22.24 0.22 -4.42 16 20 C -0.14 -5.45 10.04 22.23 0.22 -5.22 16 21 C -0.10 -4.18 8.36 22.30 0.19 -4.00 16 22 C -0.03 -1.41 3.24 -19.75 -0.06 -1.47 16 23 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 24 H 0.05 2.23 7.85 -2.39 -0.02 2.21 16 25 H 0.05 2.13 5.95 -2.39 -0.01 2.12 16 26 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.34 9.24 8.06 -89.70 -0.72 8.52 16 29 H 0.09 2.22 7.54 -2.39 -0.02 2.20 16 30 H 0.08 2.26 7.45 -2.38 -0.02 2.24 16 31 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 34 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 35 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 36 H 0.10 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -67.92 277.43 1.54 -66.38 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.28 Total: 25.92 kcal Atomic # 6 Polarization: -55.84 SS G_CDS: 2.54 Total: -53.31 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -2.97 Total: -85.64 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.70 Total: 46.64 kcal Total: -67.92 1.54 -66.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260399847.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.990 kcal (2) G-P(sol) polarization free energy of solvation -67.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds