Wall clock time and date at job start Mon Mar 30 2020 05:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99970 * 2 1 4 4 H 1.48495 * 109.47346 * 239.99998 * 3 2 1 5 5 H 1.48501 * 109.47272 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47043 * 119.99920 * 3 2 1 7 7 C 1.37880 * 119.99612 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99536 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00245 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.41253 * 354.50689 * 9 7 2 11 11 C 1.54749 * 110.36070 * 232.21798 * 9 7 2 12 12 C 1.54969 * 102.96135 * 219.24304 * 11 9 7 13 13 N 1.48709 * 103.33858 * 36.99455 * 12 11 9 14 14 C 1.47176 * 105.65608 * 321.53337 * 13 12 11 15 15 C 1.53678 * 110.62340 * 145.70252 * 14 13 12 16 16 C 1.54518 * 102.23295 * 94.70296 * 15 14 13 17 17 C 1.51454 * 105.18199 * 25.77863 * 16 15 14 18 18 C 1.38451 * 130.36728 * 163.03982 * 17 16 15 19 19 C 1.38100 * 120.26347 * 179.80360 * 18 17 16 20 20 C 1.38256 * 119.90395 * 0.18982 * 19 18 17 21 21 C 1.38085 * 119.94712 * 359.58212 * 20 19 18 22 22 C 1.38407 * 109.76935 * 342.91368 * 17 16 15 23 23 H 0.97001 * 120.00208 * 359.97438 * 1 2 3 24 24 H 1.09009 * 110.71655 * 100.87269 * 11 9 7 25 25 H 1.08996 * 110.87158 * 337.68363 * 11 9 7 26 26 H 1.09007 * 110.64342 * 278.53464 * 12 11 9 27 27 H 1.08994 * 110.78752 * 155.52654 * 12 11 9 28 28 H 1.00896 * 110.99740 * 81.94661 * 13 12 11 29 29 H 1.08998 * 110.85587 * 212.88629 * 15 14 13 30 30 H 1.08999 * 110.85157 * 336.51740 * 15 14 13 31 31 H 1.09009 * 110.29759 * 266.85421 * 16 15 14 32 32 H 1.08995 * 110.30386 * 144.71141 * 16 15 14 33 33 H 1.08001 * 119.87036 * 359.83115 * 18 17 16 34 34 H 1.08005 * 120.04878 * 179.90476 * 19 18 17 35 35 H 1.08002 * 120.02772 * 179.83520 * 20 19 18 36 36 H 1.07994 * 119.85496 * 180.24716 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.1802 -2.3200 0.0958 11 6 1.7510 -3.4107 1.1445 12 6 1.7534 -4.8173 0.4942 13 7 2.1927 -4.5495 -0.9011 14 6 1.5459 -3.2845 -1.2852 15 6 2.4580 -2.4712 -2.2170 16 6 1.9505 -2.8865 -3.6161 17 6 0.5095 -3.3034 -3.4078 18 6 -0.5178 -3.4667 -4.3214 19 6 -1.7704 -3.8641 -3.8967 20 6 -2.0013 -4.0960 -2.5534 21 6 -0.9771 -3.9384 -1.6407 22 6 0.2798 -3.5381 -2.0632 23 1 -0.4850 0.8400 0.0004 24 1 1.0644 -3.3781 1.9906 25 1 2.7568 -3.1277 1.4550 26 1 0.7520 -5.2478 0.5059 27 1 2.4595 -5.4760 0.9997 28 1 3.1972 -4.4730 -0.9555 29 1 2.3220 -1.4017 -2.0567 30 1 3.5018 -2.7551 -2.0828 31 1 2.5352 -3.7239 -3.9972 32 1 2.0045 -2.0427 -4.3039 33 1 -0.3389 -3.2832 -5.3706 34 1 -2.5697 -3.9889 -4.6122 35 1 -2.9808 -4.4042 -2.2187 36 1 -1.1581 -4.1239 -0.5923 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260399861.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:33 Heat of formation + Delta-G solvation = 25.746814 kcal Electronic energy + Delta-G solvation = -18041.033531 eV Core-core repulsion = 15489.207518 eV Total energy + Delta-G solvation = -2551.826013 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.95673 -37.17033 -33.83861 -32.79834 -30.39272 -29.08630 -28.44546 -27.07501 -24.46454 -22.39540 -21.88982 -20.56472 -19.92803 -18.52827 -16.19113 -15.75908 -14.87974 -14.73946 -14.37097 -14.26493 -14.10773 -13.63896 -12.69987 -12.61599 -12.33700 -11.84796 -11.72602 -11.54811 -11.41314 -10.93923 -10.88324 -10.60268 -10.43168 -10.21862 -10.15380 -10.04052 -9.53211 -9.18832 -8.91128 -8.54806 -8.09373 -7.92085 -7.65331 -6.07382 -4.06736 2.08116 2.12303 3.26053 3.32498 3.33731 4.36245 4.44708 5.09338 5.20953 5.24213 5.44052 5.57024 5.64870 5.78843 5.92167 5.96902 6.08698 6.12146 6.22521 6.27382 6.30732 6.48358 6.58266 6.67296 6.72778 6.79258 6.90603 7.07157 7.11588 7.19119 7.23473 7.35376 7.53433 7.66300 7.71636 7.76024 7.96109 8.09856 8.41070 8.99298 9.50522 11.00924 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.020638 B = 0.010142 C = 0.008829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.374131 B = 2760.106178 C = 3170.516007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.885 3.115 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.504 4.504 8 H 0.054 0.946 9 C 0.019 3.981 10 H 0.077 0.923 11 C -0.151 4.151 12 C 0.038 3.962 13 N -0.665 5.665 14 C 0.133 3.867 15 C -0.107 4.107 16 C -0.081 4.081 17 C -0.095 4.095 18 C -0.118 4.118 19 C -0.135 4.135 20 C -0.129 4.129 21 C -0.094 4.094 22 C -0.026 4.026 23 H 0.263 0.737 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.329 0.671 29 H 0.112 0.888 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.669 -6.579 -4.415 7.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.136 4.136 3 Si 0.713 3.287 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.542 4.542 8 H 0.072 0.928 9 C -0.001 4.001 10 H 0.095 0.905 11 C -0.190 4.190 12 C -0.092 4.092 13 N -0.293 5.293 14 C 0.042 3.958 15 C -0.144 4.144 16 C -0.119 4.119 17 C -0.095 4.095 18 C -0.136 4.136 19 C -0.154 4.154 20 C -0.147 4.147 21 C -0.113 4.113 22 C -0.027 4.027 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.145 0.855 29 H 0.130 0.870 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.054 -6.917 -4.761 8.397 hybrid contribution 0.804 1.620 0.574 1.897 sum 0.857 -5.297 -4.187 6.806 Atomic orbital electron populations 1.69888 1.05899 1.26809 1.49547 1.24985 0.94837 0.99076 0.94706 0.86761 0.79733 0.83465 0.78730 1.20043 1.21257 1.20264 1.20886 0.92566 0.90136 1.50603 0.92810 1.20111 1.00362 0.92328 0.87308 0.90493 1.23311 1.00668 0.95078 0.99978 1.23103 0.99989 0.97119 0.88961 1.62713 1.11585 1.33392 1.21614 1.20933 0.89980 0.87712 0.97193 1.22692 0.96799 1.03799 0.91159 1.21146 0.91776 0.99614 0.99324 1.20698 0.95462 0.99207 0.94157 1.20450 0.92823 1.01953 0.98414 1.20792 0.96488 1.02375 0.95706 1.20866 0.98366 1.02087 0.93366 1.20545 0.92242 0.99395 0.99113 1.20309 0.94091 0.94417 0.93902 0.92733 0.93073 0.92737 0.91582 0.92564 0.85481 0.87031 0.92496 0.91524 0.91989 0.87370 0.86993 0.86907 0.87052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.05 12.65 55.43 0.70 -24.35 16 2 C 0.07 1.79 5.43 -17.82 -0.10 1.69 16 3 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.50 -12.97 5.37 -34.44 -0.18 -13.15 16 8 H 0.05 1.37 7.68 -52.48 -0.40 0.96 16 9 C 0.02 0.45 2.86 -90.68 -0.26 0.19 16 10 H 0.08 2.09 6.04 -51.93 -0.31 1.78 16 11 C -0.15 -3.14 6.60 -24.77 -0.16 -3.31 16 12 C 0.04 0.68 7.56 -1.78 -0.01 0.67 16 13 N -0.67 -12.58 7.07 -97.92 -0.69 -13.28 16 14 C 0.13 2.80 0.96 -132.06 -0.13 2.68 16 15 C -0.11 -2.17 5.43 -25.58 -0.14 -2.31 16 16 C -0.08 -1.49 6.78 -26.72 -0.18 -1.67 16 17 C -0.09 -1.89 6.14 -104.11 -0.64 -2.53 16 18 C -0.12 -2.11 10.03 -39.55 -0.40 -2.50 16 19 C -0.14 -2.28 10.05 -39.63 -0.40 -2.68 16 20 C -0.13 -2.29 10.04 -39.63 -0.40 -2.69 16 21 C -0.09 -1.92 9.36 -39.54 -0.37 -2.29 16 22 C -0.03 -0.56 5.21 -104.43 -0.54 -1.11 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 25 H 0.05 1.13 7.87 -51.93 -0.41 0.72 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.33 5.76 8.04 -39.29 -0.32 5.45 16 29 H 0.11 2.60 5.88 -51.93 -0.31 2.30 16 30 H 0.06 1.05 7.48 -51.93 -0.39 0.66 16 31 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 35 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.11 2.22 7.99 -52.49 -0.42 1.80 16 LS Contribution 286.59 15.07 4.32 4.32 Total: -1.00 -27.99 286.59 -9.68 -37.67 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.07 Total: 9.01 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: -3.91 Total: -29.00 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.01 Total: -37.63 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.99 -9.68 -37.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260399861.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.417 kcal (2) G-P(sol) polarization free energy of solvation -27.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds