Wall clock time and date at job start Mon Mar 30 2020 05:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99970 * 2 1 4 4 H 1.48495 * 109.47346 * 239.99998 * 3 2 1 5 5 H 1.48501 * 109.47272 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47043 * 119.99920 * 3 2 1 7 7 C 1.37880 * 119.99612 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99536 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00245 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.41253 * 354.50689 * 9 7 2 11 11 C 1.54749 * 110.36070 * 232.21798 * 9 7 2 12 12 C 1.54969 * 102.96135 * 219.24304 * 11 9 7 13 13 N 1.48709 * 103.33858 * 36.99455 * 12 11 9 14 14 C 1.47176 * 105.65608 * 321.53337 * 13 12 11 15 15 C 1.53678 * 110.62340 * 145.70252 * 14 13 12 16 16 C 1.54518 * 102.23295 * 94.70296 * 15 14 13 17 17 C 1.51454 * 105.18199 * 25.77863 * 16 15 14 18 18 C 1.38451 * 130.36728 * 163.03982 * 17 16 15 19 19 C 1.38100 * 120.26347 * 179.80360 * 18 17 16 20 20 C 1.38256 * 119.90395 * 0.18982 * 19 18 17 21 21 C 1.38085 * 119.94712 * 359.58212 * 20 19 18 22 22 C 1.38407 * 109.76935 * 342.91368 * 17 16 15 23 23 H 0.97001 * 120.00208 * 359.97438 * 1 2 3 24 24 H 1.09009 * 110.71655 * 100.87269 * 11 9 7 25 25 H 1.08996 * 110.87158 * 337.68363 * 11 9 7 26 26 H 1.09007 * 110.64342 * 278.53464 * 12 11 9 27 27 H 1.08994 * 110.78752 * 155.52654 * 12 11 9 28 28 H 1.00896 * 110.99740 * 81.94661 * 13 12 11 29 29 H 1.08998 * 110.85587 * 212.88629 * 15 14 13 30 30 H 1.08999 * 110.85157 * 336.51740 * 15 14 13 31 31 H 1.09009 * 110.29759 * 266.85421 * 16 15 14 32 32 H 1.08995 * 110.30386 * 144.71141 * 16 15 14 33 33 H 1.08001 * 119.87036 * 359.83115 * 18 17 16 34 34 H 1.08005 * 120.04878 * 179.90476 * 19 18 17 35 35 H 1.08002 * 120.02772 * 179.83520 * 20 19 18 36 36 H 1.07994 * 119.85496 * 180.24716 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.1802 -2.3200 0.0958 11 6 1.7510 -3.4107 1.1445 12 6 1.7534 -4.8173 0.4942 13 7 2.1927 -4.5495 -0.9011 14 6 1.5459 -3.2845 -1.2852 15 6 2.4580 -2.4712 -2.2170 16 6 1.9505 -2.8865 -3.6161 17 6 0.5095 -3.3034 -3.4078 18 6 -0.5178 -3.4667 -4.3214 19 6 -1.7704 -3.8641 -3.8967 20 6 -2.0013 -4.0960 -2.5534 21 6 -0.9771 -3.9384 -1.6407 22 6 0.2798 -3.5381 -2.0632 23 1 -0.4850 0.8400 0.0004 24 1 1.0644 -3.3781 1.9906 25 1 2.7568 -3.1277 1.4550 26 1 0.7520 -5.2478 0.5059 27 1 2.4595 -5.4760 0.9997 28 1 3.1972 -4.4730 -0.9555 29 1 2.3220 -1.4017 -2.0567 30 1 3.5018 -2.7551 -2.0828 31 1 2.5352 -3.7239 -3.9972 32 1 2.0045 -2.0427 -4.3039 33 1 -0.3389 -3.2832 -5.3706 34 1 -2.5697 -3.9889 -4.6122 35 1 -2.9808 -4.4042 -2.2187 36 1 -1.1581 -4.1239 -0.5923 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260399861.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:33 Heat of formation + Delta-G solvation = 9.891257 kcal Electronic energy + Delta-G solvation = -18041.721080 eV Core-core repulsion = 15489.207518 eV Total energy + Delta-G solvation = -2552.513562 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.49258 -38.69012 -35.32878 -34.76621 -31.83969 -30.88274 -29.95439 -28.60746 -26.33626 -23.98184 -23.37367 -22.12469 -21.45095 -20.20578 -18.10938 -17.33182 -16.58027 -16.29796 -15.94386 -15.76679 -15.66126 -15.17845 -14.44260 -14.13007 -13.81591 -13.55165 -13.41774 -13.06264 -12.98604 -12.73541 -12.48461 -12.40064 -11.95773 -11.85935 -11.74368 -11.53034 -11.22536 -10.98439 -10.80700 -10.54150 -9.54230 -9.44102 -9.16973 -8.10504 -6.13362 0.64511 0.68646 1.40059 1.40457 1.47567 2.41542 2.99794 3.18590 3.59473 3.78268 3.92444 4.21941 4.27540 4.33945 4.42802 4.45507 4.54336 4.68161 4.69076 4.83416 4.85584 4.99749 5.02961 5.14035 5.19731 5.22865 5.31052 5.51720 5.57290 5.62484 5.69304 5.71991 5.75212 5.84163 6.04152 6.19739 6.31142 6.36584 6.70217 6.99163 7.45338 8.97804 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.020638 B = 0.010142 C = 0.008829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.374131 B = 2760.106178 C = 3170.516007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.015 3.985 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.500 4.500 8 H 0.054 0.946 9 C 0.011 3.989 10 H 0.036 0.964 11 C -0.149 4.149 12 C 0.049 3.951 13 N -0.660 5.660 14 C 0.138 3.862 15 C -0.108 4.108 16 C -0.074 4.074 17 C -0.117 4.117 18 C -0.122 4.122 19 C -0.131 4.131 20 C -0.133 4.133 21 C -0.121 4.121 22 C -0.060 4.060 23 H 0.258 0.742 24 H 0.043 0.957 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.338 0.662 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.138 0.862 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.353 -7.522 -5.937 9.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.183 4.183 3 Si 0.769 3.231 4 H -0.191 1.191 5 H -0.217 1.217 6 H -0.197 1.197 7 C -0.538 4.538 8 H 0.073 0.927 9 C -0.010 4.010 10 H 0.054 0.946 11 C -0.188 4.188 12 C -0.081 4.081 13 N -0.288 5.288 14 C 0.047 3.953 15 C -0.146 4.146 16 C -0.111 4.111 17 C -0.117 4.117 18 C -0.140 4.140 19 C -0.149 4.149 20 C -0.151 4.151 21 C -0.140 4.140 22 C -0.061 4.061 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.156 0.844 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.156 0.844 34 H 0.168 0.832 35 H 0.157 0.843 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.766 -7.872 -6.282 10.101 hybrid contribution 0.549 1.853 1.056 2.202 sum 1.315 -6.019 -5.227 8.079 Atomic orbital electron populations 1.70048 1.07373 1.27020 1.51897 1.25669 0.95432 1.02184 0.95046 0.85843 0.78513 0.79732 0.79057 1.19066 1.21675 1.19735 1.21161 0.92604 0.91133 1.48899 0.92740 1.20074 0.97728 0.92903 0.90271 0.94584 1.23218 1.00156 0.96511 0.98947 1.23065 1.00873 0.95757 0.88389 1.62684 1.12178 1.32027 1.21881 1.20742 0.90718 0.88071 0.95816 1.22560 0.97774 1.01498 0.92759 1.21099 0.91230 1.00703 0.98026 1.21035 0.96800 0.99851 0.94044 1.20869 0.92567 1.00902 0.99648 1.21263 0.97231 1.00527 0.95880 1.21228 0.98809 1.01305 0.93715 1.20696 0.93128 1.00914 0.99223 1.20493 0.94450 0.96162 0.94969 0.93276 0.93791 0.92693 0.91926 0.89270 0.84448 0.90482 0.90778 0.89405 0.90935 0.84387 0.83180 0.84322 0.88329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.40 12.65 21.45 0.27 -54.13 16 2 C 0.02 0.83 5.43 84.66 0.46 1.29 16 3 Si 0.94 43.07 29.54 68.60 2.03 45.10 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.50 -26.24 5.37 25.60 0.14 -26.10 16 8 H 0.05 2.79 7.68 -2.91 -0.02 2.76 16 9 C 0.01 0.52 2.86 -10.83 -0.03 0.48 16 10 H 0.04 2.05 6.04 -2.39 -0.01 2.04 16 11 C -0.15 -6.25 6.60 31.86 0.21 -6.04 16 12 C 0.05 1.70 7.56 86.63 0.65 2.36 16 13 N -0.66 -24.12 7.07 -463.72 -3.28 -27.40 16 14 C 0.14 5.82 0.96 3.08 0.00 5.83 16 15 C -0.11 -4.34 5.43 31.34 0.17 -4.17 16 16 C -0.07 -2.57 6.78 30.60 0.21 -2.36 16 17 C -0.12 -4.51 6.14 -19.53 -0.12 -4.63 16 18 C -0.12 -4.03 10.03 22.29 0.22 -3.81 16 19 C -0.13 -4.04 10.05 22.24 0.22 -3.82 16 20 C -0.13 -4.54 10.04 22.24 0.22 -4.32 16 21 C -0.12 -4.98 9.36 22.30 0.21 -4.77 16 22 C -0.06 -2.57 5.21 -19.74 -0.10 -2.67 16 23 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 24 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 25 H 0.05 2.26 7.87 -2.39 -0.02 2.25 16 26 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 27 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.34 11.16 8.04 -89.70 -0.72 10.44 16 29 H 0.08 3.64 5.88 -2.39 -0.01 3.62 16 30 H 0.07 2.63 7.48 -2.39 -0.02 2.61 16 31 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 34 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 35 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 36 H 0.10 4.13 7.99 -2.91 -0.02 4.11 16 Total: -1.00 -61.77 286.59 1.84 -59.94 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.35 Total: 29.22 kcal Atomic # 6 Polarization: -55.20 SS G_CDS: 2.47 Total: -52.73 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -3.01 Total: -81.53 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -61.77 1.84 -59.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260399861.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.829 kcal (2) G-P(sol) polarization free energy of solvation -61.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds