Wall clock time and date at job start Mon Mar 30 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34182 * 126.55339 * 2 1 4 4 N 1.36881 * 109.99426 * 180.21039 * 3 2 1 5 5 C 1.46507 * 124.98484 * 179.74739 * 4 3 2 6 6 C 1.52994 * 109.46992 * 300.02444 * 5 4 3 7 7 C 1.52996 * 109.47060 * 60.02688 * 5 4 3 8 8 C 1.37356 * 110.02204 * 359.61702 * 4 3 2 9 9 C 1.39706 * 133.11679 * 180.10606 * 8 4 3 10 10 C 1.35998 * 120.38370 * 180.29686 * 9 8 4 11 11 C 1.41152 * 120.57549 * 359.97438 * 10 9 8 12 12 C 1.41312 * 120.08091 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00665 * 24.59154 * 12 11 10 14 14 C 1.39870 * 119.99928 * 204.60080 * 12 11 10 15 15 N 1.30891 * 119.99993 * 17.93814 * 14 12 11 16 16 Si 1.86800 * 120.00086 * 197.94378 * 14 12 11 17 17 H 1.48504 * 109.47266 * 59.99803 * 16 14 12 18 18 H 1.48499 * 109.47397 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47141 * 299.99553 * 16 14 12 20 20 C 1.40376 * 119.83756 * 0.02562 * 11 10 9 21 21 C 1.39034 * 119.29721 * 359.96996 * 20 11 10 22 22 H 1.09000 * 109.47616 * 90.01830 * 1 2 3 23 23 H 1.09000 * 109.47233 * 210.02480 * 1 2 3 24 24 H 1.09005 * 109.47210 * 330.02291 * 1 2 3 25 25 H 1.07994 * 124.99872 * 359.94643 * 3 2 1 26 26 H 1.09004 * 109.46806 * 180.02562 * 5 4 3 27 27 H 1.09002 * 109.46867 * 180.02562 * 6 5 4 28 28 H 1.08998 * 109.47485 * 299.99699 * 6 5 4 29 29 H 1.09002 * 109.47586 * 60.00101 * 6 5 4 30 30 H 1.08996 * 109.47471 * 59.99738 * 7 5 4 31 31 H 1.09006 * 109.46926 * 180.02562 * 7 5 4 32 32 H 1.09004 * 109.47283 * 299.99673 * 7 5 4 33 33 H 1.07999 * 119.80747 * 0.31633 * 9 8 4 34 34 H 1.07996 * 119.71200 * 179.97438 * 10 9 8 35 35 H 0.96997 * 120.00211 * 179.97438 * 15 14 12 36 36 H 1.07992 * 120.35283 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3061 1.0779 0.0000 4 7 3.6181 0.6878 -0.0047 5 6 4.7653 1.5989 -0.0114 6 6 4.7105 2.4787 -1.2619 7 6 4.7218 2.4830 1.2365 8 6 3.7011 -0.6833 0.0007 9 6 4.7767 -1.5748 0.0011 10 6 4.5577 -2.9170 0.0012 11 6 3.2426 -3.4299 0.0014 12 6 3.0270 -4.8265 0.0020 13 1 3.7851 -5.4898 0.3916 14 6 1.8319 -5.3498 -0.5020 15 7 1.0743 -4.6193 -1.2802 16 14 1.3169 -7.0913 -0.0645 17 1 1.1666 -7.2078 1.4084 18 1 0.0216 -7.4040 -0.7199 19 1 2.3527 -8.0465 -0.5335 20 6 2.1495 -2.5492 0.0010 21 6 2.3804 -1.1782 0.0010 22 1 -0.3634 -0.0003 -1.0276 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3634 0.8902 0.5135 25 1 1.9643 2.1023 -0.0008 26 1 5.6890 1.0201 -0.0146 27 1 5.5644 3.1563 -1.2671 28 1 4.7417 1.8489 -2.1510 29 1 3.7869 3.0576 -1.2588 30 1 4.7608 1.8562 2.1274 31 1 5.5751 3.1612 1.2313 32 1 3.7981 3.0618 1.2397 33 1 5.7881 -1.1959 0.0017 34 1 5.3972 -3.5964 0.0011 35 1 0.2456 -4.9824 -1.6301 36 1 1.1399 -2.9325 0.0007 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260409305.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:08 Heat of formation + Delta-G solvation = 24.769593 kcal Electronic energy + Delta-G solvation = -17161.253268 eV Core-core repulsion = 14609.384879 eV Total energy + Delta-G solvation = -2551.868389 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.81880 -38.09946 -36.00360 -34.96313 -32.53978 -30.58064 -30.18692 -28.11920 -27.34077 -26.48954 -23.21392 -22.50542 -21.53463 -19.60376 -18.95016 -17.46784 -17.10589 -16.47138 -15.63964 -15.43598 -15.24989 -14.79914 -14.32259 -14.07539 -13.88428 -13.75813 -13.39245 -13.22799 -13.12222 -12.96748 -12.81013 -12.69744 -12.46413 -12.33759 -12.17330 -11.86820 -11.57900 -11.53958 -11.13757 -10.79558 -9.92444 -8.82514 -8.47651 -8.11641 -6.10679 0.75851 1.13615 1.39060 1.50737 1.59053 2.11246 2.24773 2.27215 2.84009 3.77583 3.82248 4.07138 4.12877 4.18888 4.30916 4.40931 4.58588 4.69303 4.71240 4.85892 4.86839 4.93415 4.99285 5.01450 5.15014 5.20143 5.23202 5.30261 5.37462 5.43717 5.58974 5.71210 5.86387 6.08848 6.32379 6.38502 6.54464 6.84110 6.94579 7.06582 7.16475 8.48028 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034509 B = 0.006452 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.185253 B = 4338.994656 C = 4888.138616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.234 4.234 3 C 0.061 3.939 4 N -0.479 5.479 5 C 0.126 3.874 6 C -0.154 4.154 7 C -0.152 4.152 8 C -0.001 4.001 9 C -0.116 4.116 10 C -0.185 4.185 11 C 0.050 3.950 12 C -0.505 4.505 13 H 0.072 0.928 14 C 0.031 3.969 15 N -0.836 5.836 16 Si 0.978 3.022 17 H -0.263 1.263 18 H -0.270 1.270 19 H -0.259 1.259 20 C -0.170 4.170 21 C -0.100 4.100 22 H 0.052 0.948 23 H 0.036 0.964 24 H 0.083 0.917 25 H 0.192 0.808 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.282 0.718 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.270 13.006 2.020 13.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.243 4.243 3 C -0.065 4.065 4 N -0.165 5.165 5 C 0.025 3.975 6 C -0.211 4.211 7 C -0.210 4.210 8 C -0.104 4.104 9 C -0.136 4.136 10 C -0.205 4.205 11 C 0.047 3.953 12 C -0.536 4.536 13 H 0.090 0.910 14 C -0.181 4.181 15 N -0.464 5.464 16 Si 0.800 3.200 17 H -0.188 1.188 18 H -0.195 1.195 19 H -0.183 1.183 20 C -0.191 4.191 21 C -0.104 4.104 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.102 0.898 25 H 0.209 0.791 26 H 0.103 0.897 27 H 0.116 0.884 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.092 0.908 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.364 13.225 1.869 13.773 hybrid contribution -0.290 -1.294 -0.055 1.327 sum 3.073 11.931 1.814 12.453 Atomic orbital electron populations 1.19904 0.89368 1.01462 1.00846 1.20572 0.95904 0.91375 1.16413 1.21606 0.82009 0.98897 1.04008 1.43842 1.05770 1.02822 1.64051 1.21465 0.87440 0.90826 0.97795 1.22137 1.04156 0.99375 0.95463 1.22130 1.04150 0.99315 0.95425 1.18172 0.94979 0.83850 1.13428 1.19521 0.95837 0.91994 1.06289 1.20814 0.96347 0.94311 1.09007 1.17754 0.91346 0.94039 0.92157 1.19616 1.02816 0.92420 1.38770 0.90958 1.26670 0.95459 1.03920 0.92062 1.69956 1.12334 1.40087 1.24005 0.85323 0.78196 0.77090 0.79434 1.18778 1.19461 1.18316 1.20563 0.98308 0.90321 1.09895 1.19497 0.93208 0.93433 1.04215 0.92892 0.94518 0.89795 0.79113 0.89745 0.88411 0.94006 0.91228 0.93730 0.88470 0.91223 0.86377 0.87387 0.90788 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.09 10.42 71.23 0.74 -1.35 16 2 C -0.23 -9.87 6.32 -18.59 -0.12 -9.98 16 3 C 0.06 2.08 10.05 82.98 0.83 2.92 16 4 N -0.48 -17.20 2.64 -492.93 -1.30 -18.50 16 5 C 0.13 3.21 3.53 44.99 0.16 3.37 16 6 C -0.15 -3.10 9.23 71.98 0.66 -2.44 16 7 C -0.15 -2.99 9.23 71.98 0.66 -2.32 16 8 C 0.00 -0.06 6.82 39.32 0.27 0.21 16 9 C -0.12 -5.35 9.72 22.10 0.21 -5.13 16 10 C -0.18 -9.56 9.69 22.46 0.22 -9.34 16 11 C 0.05 2.89 5.57 -21.29 -0.12 2.77 16 12 C -0.51 -29.25 9.04 23.42 0.21 -29.04 16 13 H 0.07 3.99 7.91 -2.91 -0.02 3.97 16 14 C 0.03 1.71 5.13 85.23 0.44 2.15 16 15 N -0.84 -47.69 10.96 21.82 0.24 -47.45 16 16 Si 0.98 41.18 29.60 68.60 2.03 43.21 16 17 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 18 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 19 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 20 C -0.17 -9.91 8.75 22.98 0.20 -9.71 16 21 C -0.10 -5.15 6.34 -20.20 -0.13 -5.28 16 22 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 25 H 0.19 4.62 8.06 -2.91 -0.02 4.60 16 26 H 0.08 2.21 7.27 -2.39 -0.02 2.19 16 27 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.28 7.89 -2.39 -0.02 1.26 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 31 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.07 1.24 7.89 -2.39 -0.02 1.22 16 33 H 0.12 4.52 7.50 -2.91 -0.02 4.50 16 34 H 0.11 5.14 8.06 -2.91 -0.02 5.11 16 35 H 0.28 14.66 8.30 -92.71 -0.77 13.89 16 36 H 0.09 5.79 6.16 -2.91 -0.02 5.77 16 Total: -1.00 -69.45 300.39 6.27 -63.18 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 1.05 Total: 22.73 kcal Atomic # 6 Polarization: -67.42 SS G_CDS: 4.25 Total: -63.17 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: -1.06 Total: -65.95 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -69.45 6.27 -63.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260409305.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.949 kcal (2) G-P(sol) polarization free energy of solvation -69.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds