Wall clock time and date at job start Mon Mar 30 2020 05:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34180 * 125.00086 * 2 1 4 4 C 1.46656 * 106.89840 * 180.26521 * 3 2 1 5 5 C 1.39023 * 133.89077 * 179.73359 * 4 3 2 6 6 C 1.40382 * 119.29946 * 179.97438 * 5 4 3 7 7 C 1.41320 * 120.08373 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00156 * 154.42099 * 7 6 5 9 9 C 1.39872 * 120.00150 * 334.42682 * 7 6 5 10 10 N 1.30889 * 119.99584 * 344.73450 * 9 7 6 11 11 Si 1.86800 * 120.00097 * 164.73260 * 9 7 6 12 12 H 1.48502 * 109.46976 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46742 * 119.99591 * 11 9 7 14 14 H 1.48491 * 109.47224 * 240.00007 * 11 9 7 15 15 C 1.41145 * 119.83680 * 0.02562 * 6 5 4 16 16 C 1.36002 * 120.57193 * 359.97438 * 15 6 5 17 17 C 1.39699 * 120.38873 * 359.97438 * 16 15 6 18 18 N 1.36874 * 125.00619 * 179.80152 * 2 1 3 19 19 C 1.46504 * 124.98807 * 359.97438 * 18 2 1 20 20 C 1.53002 * 109.46764 * 119.40434 * 19 18 2 21 21 C 1.52997 * 109.47397 * 239.40678 * 19 18 2 22 22 H 1.08996 * 109.47430 * 270.88386 * 1 2 3 23 23 H 1.08998 * 109.47253 * 30.88930 * 1 2 3 24 24 H 1.09007 * 109.46707 * 150.88520 * 1 2 3 25 25 H 1.08002 * 126.55111 * 359.97438 * 3 2 1 26 26 H 1.08008 * 120.35498 * 0.02562 * 5 4 3 27 27 H 0.97002 * 119.99512 * 180.02562 * 10 9 7 28 28 H 1.08000 * 119.71796 * 179.97438 * 15 6 5 29 29 H 1.08007 * 119.80545 * 180.02562 * 16 15 6 30 30 H 1.08998 * 109.47061 * 359.41186 * 19 18 2 31 31 H 1.09005 * 109.47040 * 180.02562 * 20 19 18 32 32 H 1.09001 * 109.47152 * 60.00260 * 20 19 18 33 33 H 1.08996 * 109.47293 * 300.00381 * 20 19 18 34 34 H 1.09003 * 109.47224 * 173.13186 * 21 19 18 35 35 H 1.09007 * 109.47206 * 293.12478 * 21 19 18 36 36 H 1.08992 * 109.47161 * 53.12644 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2767 1.0991 0.0000 4 6 3.6706 0.6434 -0.0065 5 6 4.8980 1.2963 -0.0141 6 6 6.0794 0.5380 -0.0184 7 6 7.3361 1.1845 -0.0266 8 1 8.2043 0.6823 0.3739 9 6 7.4554 2.4747 -0.5534 10 7 6.4997 2.9678 -1.2995 11 14 8.9785 3.4939 -0.1921 12 1 9.9036 2.7136 0.6684 13 1 9.6591 3.8359 -1.4669 14 1 8.5841 4.7421 0.5089 15 6 6.0091 -0.8717 -0.0155 16 6 4.8051 -1.5042 -0.0081 17 6 3.6191 -0.7661 -0.0027 18 7 2.2922 -1.1211 0.0039 19 6 1.7910 -2.4977 0.0092 20 6 2.2816 -3.2239 -1.2450 21 6 2.3068 -3.2235 1.2534 22 1 -0.3634 0.0159 1.0275 23 1 -0.3633 0.8819 -0.5276 24 1 -0.3633 -0.8979 -0.5001 25 1 1.9349 2.1236 -0.0004 26 1 4.9423 2.3754 -0.0158 27 1 6.5826 3.8625 -1.6652 28 1 6.9192 -1.4531 -0.0193 29 1 4.7658 -2.5835 -0.0056 30 1 0.7011 -2.4875 0.0201 31 1 1.9083 -4.2480 -1.2413 32 1 3.3715 -3.2341 -1.2560 33 1 1.9142 -2.7068 -2.1314 34 1 1.8380 -4.2053 1.3218 35 1 3.3882 -3.3415 1.1831 36 1 2.0618 -2.6412 2.1415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260411923.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:41 Heat of formation + Delta-G solvation = 42.009922 kcal Electronic energy + Delta-G solvation = -17282.106898 eV Core-core repulsion = 14730.986106 eV Total energy + Delta-G solvation = -2551.120792 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.29282 -36.30162 -34.59768 -33.16355 -30.49398 -29.53114 -28.40487 -27.08542 -25.98792 -24.55089 -21.63506 -20.40584 -19.85029 -18.61136 -17.02973 -15.82809 -15.13049 -14.66319 -14.40104 -14.20036 -13.46007 -13.35584 -12.92186 -12.55178 -12.44509 -12.29897 -12.04939 -11.87516 -11.54851 -11.50750 -11.30314 -11.14642 -11.00880 -10.93712 -10.66540 -10.48121 -9.77548 -9.59856 -9.25280 -8.87569 -8.25215 -6.87912 -6.51063 -6.40929 -4.07410 2.52354 2.95053 3.18464 3.23660 3.36887 3.66429 3.80825 4.09323 4.81774 4.88707 5.20511 5.21803 5.35173 5.52208 5.65371 5.76080 5.81286 5.84945 5.88038 5.92555 6.04520 6.10242 6.23278 6.34839 6.35728 6.63793 6.84555 6.89045 7.15898 7.31643 7.44236 7.61508 7.67918 8.03621 8.22611 8.26342 8.42216 8.53892 8.82433 9.09444 9.14909 10.43786 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035337 B = 0.006456 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.181047 B = 4335.983673 C = 4873.624983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.051 3.949 3 C -0.218 4.218 4 C -0.076 4.076 5 C -0.139 4.139 6 C 0.082 3.918 7 C -0.466 4.466 8 H 0.073 0.927 9 C 0.073 3.927 10 N -0.804 5.804 11 Si 0.903 3.097 12 H -0.263 1.263 13 H -0.277 1.277 14 H -0.274 1.274 15 C -0.166 4.166 16 C -0.122 4.122 17 C 0.018 3.982 18 N -0.482 5.482 19 C 0.139 3.861 20 C -0.165 4.165 21 C -0.163 4.163 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.056 0.944 25 H 0.126 0.874 26 H 0.121 0.879 27 H 0.275 0.725 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.985 -7.047 1.784 11.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.055 4.055 3 C -0.245 4.245 4 C -0.079 4.079 5 C -0.160 4.160 6 C 0.080 3.920 7 C -0.497 4.497 8 H 0.091 0.909 9 C -0.142 4.142 10 N -0.431 5.431 11 Si 0.728 3.272 12 H -0.187 1.187 13 H -0.203 1.203 14 H -0.200 1.200 15 C -0.186 4.186 16 C -0.143 4.143 17 C -0.084 4.084 18 N -0.170 5.170 19 C 0.036 3.964 20 C -0.223 4.223 21 C -0.221 4.221 22 H 0.083 0.917 23 H 0.093 0.907 24 H 0.075 0.925 25 H 0.144 0.856 26 H 0.139 0.861 27 H 0.086 0.914 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.139 -7.162 1.646 11.727 hybrid contribution 0.697 0.498 -0.006 0.856 sum -8.442 -6.664 1.640 10.880 Atomic orbital electron populations 1.20323 0.89682 1.02289 1.01799 1.19902 0.92172 0.86290 1.07178 1.21310 0.91985 0.96223 1.14953 1.19134 0.92971 0.91626 1.04189 1.20754 0.88781 0.99574 1.06867 1.17385 0.93328 0.90172 0.91143 1.19406 0.94994 0.99105 1.36228 0.90905 1.25785 0.97430 0.97973 0.92985 1.69869 1.32774 1.16357 1.24150 0.86355 0.81989 0.79947 0.78885 1.18692 1.20305 1.19979 1.20670 0.94857 0.95119 1.07919 1.19308 0.90429 0.96275 1.08245 1.17868 0.83021 0.93902 1.13561 1.43476 1.04181 1.03303 1.66027 1.21003 0.98430 0.81300 0.95665 1.22211 1.03182 0.99545 0.97376 1.22192 1.02765 0.99644 0.97511 0.91734 0.90729 0.92481 0.85562 0.86099 0.91413 0.88520 0.89436 0.89858 0.91911 0.91226 0.92332 0.91954 0.91410 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 9.86 36.01 0.36 -0.76 16 2 C 0.05 0.95 6.83 -81.77 -0.56 0.40 16 3 C -0.22 -4.74 10.96 -37.62 -0.41 -5.15 16 4 C -0.08 -1.92 6.36 -105.15 -0.67 -2.59 16 5 C -0.14 -3.83 8.73 -38.48 -0.34 -4.17 16 6 C 0.08 2.27 5.57 -106.82 -0.60 1.68 16 7 C -0.47 -12.82 9.05 -37.80 -0.34 -13.16 16 8 H 0.07 1.92 7.89 -52.48 -0.41 1.51 16 9 C 0.07 1.93 5.18 -17.34 -0.09 1.84 16 10 N -0.80 -21.91 10.87 55.54 0.60 -21.31 16 11 Si 0.90 19.54 29.59 -169.99 -5.03 14.51 16 12 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 13 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 14 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 15 C -0.17 -4.12 9.69 -39.28 -0.38 -4.50 16 16 C -0.12 -2.77 8.52 -39.84 -0.34 -3.11 16 17 C 0.02 0.41 6.18 -83.78 -0.52 -0.11 16 18 N -0.48 -9.26 2.64 -102.64 -0.27 -9.53 16 19 C 0.14 2.05 3.40 -67.93 -0.23 1.82 16 20 C -0.17 -2.28 9.22 37.16 0.34 -1.94 16 21 C -0.16 -2.21 9.13 37.16 0.34 -1.87 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.66 6.92 -51.93 -0.36 0.31 16 25 H 0.13 2.52 8.06 -52.49 -0.42 2.09 16 26 H 0.12 3.49 6.14 -52.48 -0.32 3.16 16 27 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 28 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 29 H 0.09 1.72 5.59 -52.48 -0.29 1.43 16 30 H 0.08 1.05 6.46 -51.93 -0.34 0.71 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.08 6.04 -51.93 -0.31 0.77 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.01 6.16 -51.93 -0.32 0.69 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 291.57 15.07 4.39 4.39 Total: -1.00 -29.97 291.57 -8.61 -38.58 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -4.87 Total: 4.96 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: -3.43 Total: -31.61 kcal Atomic # 7 Polarization: -31.17 SS G_CDS: 0.33 Total: -30.84 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.97 -8.61 -38.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260411923.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.594 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds