Wall clock time and date at job start Mon Mar 30 2020 05:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34180 * 125.00086 * 2 1 4 4 C 1.46656 * 106.89840 * 180.26521 * 3 2 1 5 5 C 1.39023 * 133.89077 * 179.73359 * 4 3 2 6 6 C 1.40382 * 119.29946 * 179.97438 * 5 4 3 7 7 C 1.41320 * 120.08373 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00156 * 154.42099 * 7 6 5 9 9 C 1.39872 * 120.00150 * 334.42682 * 7 6 5 10 10 N 1.30889 * 119.99584 * 344.73450 * 9 7 6 11 11 Si 1.86800 * 120.00097 * 164.73260 * 9 7 6 12 12 H 1.48502 * 109.46976 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46742 * 119.99591 * 11 9 7 14 14 H 1.48491 * 109.47224 * 240.00007 * 11 9 7 15 15 C 1.41145 * 119.83680 * 0.02562 * 6 5 4 16 16 C 1.36002 * 120.57193 * 359.97438 * 15 6 5 17 17 C 1.39699 * 120.38873 * 359.97438 * 16 15 6 18 18 N 1.36874 * 125.00619 * 179.80152 * 2 1 3 19 19 C 1.46504 * 124.98807 * 359.97438 * 18 2 1 20 20 C 1.53002 * 109.46764 * 119.40434 * 19 18 2 21 21 C 1.52997 * 109.47397 * 239.40678 * 19 18 2 22 22 H 1.08996 * 109.47430 * 270.88386 * 1 2 3 23 23 H 1.08998 * 109.47253 * 30.88930 * 1 2 3 24 24 H 1.09007 * 109.46707 * 150.88520 * 1 2 3 25 25 H 1.08002 * 126.55111 * 359.97438 * 3 2 1 26 26 H 1.08008 * 120.35498 * 0.02562 * 5 4 3 27 27 H 0.97002 * 119.99512 * 180.02562 * 10 9 7 28 28 H 1.08000 * 119.71796 * 179.97438 * 15 6 5 29 29 H 1.08007 * 119.80545 * 180.02562 * 16 15 6 30 30 H 1.08998 * 109.47061 * 359.41186 * 19 18 2 31 31 H 1.09005 * 109.47040 * 180.02562 * 20 19 18 32 32 H 1.09001 * 109.47152 * 60.00260 * 20 19 18 33 33 H 1.08996 * 109.47293 * 300.00381 * 20 19 18 34 34 H 1.09003 * 109.47224 * 173.13186 * 21 19 18 35 35 H 1.09007 * 109.47206 * 293.12478 * 21 19 18 36 36 H 1.08992 * 109.47161 * 53.12644 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2767 1.0991 0.0000 4 6 3.6706 0.6434 -0.0065 5 6 4.8980 1.2963 -0.0141 6 6 6.0794 0.5380 -0.0184 7 6 7.3361 1.1845 -0.0266 8 1 8.2043 0.6823 0.3739 9 6 7.4554 2.4747 -0.5534 10 7 6.4997 2.9678 -1.2995 11 14 8.9785 3.4939 -0.1921 12 1 9.9036 2.7136 0.6684 13 1 9.6591 3.8359 -1.4669 14 1 8.5841 4.7421 0.5089 15 6 6.0091 -0.8717 -0.0155 16 6 4.8051 -1.5042 -0.0081 17 6 3.6191 -0.7661 -0.0027 18 7 2.2922 -1.1211 0.0039 19 6 1.7910 -2.4977 0.0092 20 6 2.2816 -3.2239 -1.2450 21 6 2.3068 -3.2235 1.2534 22 1 -0.3634 0.0159 1.0275 23 1 -0.3633 0.8819 -0.5276 24 1 -0.3633 -0.8979 -0.5001 25 1 1.9349 2.1236 -0.0004 26 1 4.9423 2.3754 -0.0158 27 1 6.5826 3.8625 -1.6652 28 1 6.9192 -1.4531 -0.0193 29 1 4.7658 -2.5835 -0.0056 30 1 0.7011 -2.4875 0.0201 31 1 1.9083 -4.2480 -1.2413 32 1 3.3715 -3.2341 -1.2560 33 1 1.9142 -2.7068 -2.1314 34 1 1.8380 -4.2053 1.3218 35 1 3.3882 -3.3415 1.1831 36 1 2.0618 -2.6412 2.1415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260411923.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:41 Heat of formation + Delta-G solvation = 26.358748 kcal Electronic energy + Delta-G solvation = -17282.785584 eV Core-core repulsion = 14730.986106 eV Total energy + Delta-G solvation = -2551.799478 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.92491 -38.09985 -35.95153 -35.07646 -32.01828 -31.24908 -30.14269 -28.14512 -27.66215 -26.35126 -23.20003 -22.10644 -21.57790 -20.14248 -18.98947 -17.46352 -16.86178 -16.25796 -15.79618 -15.67672 -15.22608 -14.82343 -14.26445 -13.98431 -13.74592 -13.72813 -13.60247 -13.25963 -13.09002 -13.03324 -12.82973 -12.73152 -12.55116 -12.36444 -12.20904 -11.94245 -11.51659 -11.49079 -11.09766 -10.79605 -10.05070 -8.76033 -8.45747 -8.18148 -6.13036 0.73855 1.12324 1.38678 1.54109 1.56774 2.09165 2.20863 2.26647 2.85278 3.75886 3.82552 3.96866 4.10760 4.18272 4.23609 4.44710 4.58194 4.66321 4.69121 4.78567 4.82594 4.85372 4.95487 5.04534 5.08959 5.17358 5.24009 5.28022 5.32795 5.41109 5.57365 5.72123 5.82540 6.09579 6.34065 6.36590 6.54249 6.84149 6.93486 7.06627 7.16577 8.49311 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035337 B = 0.006456 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.181047 B = 4335.983673 C = 4873.624983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.082 3.918 3 C -0.269 4.269 4 C -0.106 4.106 5 C -0.174 4.174 6 C 0.051 3.949 7 C -0.503 4.503 8 H 0.072 0.928 9 C 0.027 3.973 10 N -0.841 5.841 11 Si 0.981 3.019 12 H -0.257 1.257 13 H -0.267 1.267 14 H -0.268 1.268 15 C -0.188 4.188 16 C -0.108 4.108 17 C 0.011 3.989 18 N -0.477 5.477 19 C 0.128 3.872 20 C -0.162 4.162 21 C -0.160 4.160 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.131 0.869 26 H 0.093 0.907 27 H 0.281 0.719 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.101 0.899 35 H 0.048 0.952 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.164 -9.129 2.042 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.027 4.027 3 C -0.295 4.295 4 C -0.110 4.110 5 C -0.195 4.195 6 C 0.049 3.951 7 C -0.534 4.534 8 H 0.091 0.909 9 C -0.184 4.184 10 N -0.469 5.469 11 Si 0.802 3.198 12 H -0.181 1.181 13 H -0.192 1.192 14 H -0.193 1.193 15 C -0.208 4.208 16 C -0.128 4.128 17 C -0.092 4.092 18 N -0.163 5.163 19 C 0.027 3.973 20 C -0.220 4.220 21 C -0.217 4.217 22 H 0.106 0.894 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.149 0.851 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.126 0.874 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.120 0.880 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.067 0.933 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.339 -9.285 1.905 14.779 hybrid contribution 1.148 0.991 -0.087 1.519 sum -10.191 -8.294 1.818 13.265 Atomic orbital electron populations 1.20524 0.84908 1.04440 1.03941 1.20724 0.94806 0.85007 1.02139 1.21490 0.90938 0.97954 1.19134 1.19577 0.93852 0.93444 1.04138 1.20613 0.90386 0.98408 1.10084 1.17742 0.93585 0.91712 0.92083 1.19683 0.95186 1.00666 1.37862 0.90943 1.26703 1.00902 0.98679 0.92140 1.69973 1.34962 1.16926 1.25027 0.85186 0.77665 0.77937 0.78991 1.18091 1.19204 1.19317 1.20859 0.96449 0.94334 1.09149 1.19583 0.89611 0.97847 1.05769 1.17988 0.85085 0.93108 1.13003 1.43899 1.02690 1.05643 1.64117 1.21522 1.00462 0.78615 0.96722 1.22203 1.01717 1.01662 0.96424 1.22179 1.01873 1.01407 0.96282 0.89353 0.89291 0.89699 0.85098 0.88929 0.90915 0.87363 0.86127 0.86285 0.87989 0.93520 0.93113 0.87994 0.93265 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 9.86 71.24 0.70 -1.07 16 2 C 0.08 2.89 6.83 40.85 0.28 3.17 16 3 C -0.27 -11.91 10.96 23.54 0.26 -11.65 16 4 C -0.11 -5.62 6.36 -20.20 -0.13 -5.75 16 5 C -0.17 -10.32 8.73 22.98 0.20 -10.12 16 6 C 0.05 3.01 5.57 -21.29 -0.12 2.89 16 7 C -0.50 -29.30 9.05 23.42 0.21 -29.09 16 8 H 0.07 4.03 7.89 -2.91 -0.02 4.01 16 9 C 0.03 1.51 5.18 85.23 0.44 1.95 16 10 N -0.84 -48.56 10.87 21.82 0.24 -48.32 16 11 Si 0.98 41.61 29.59 68.60 2.03 43.64 16 12 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 13 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 14 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 15 C -0.19 -9.71 9.69 22.46 0.22 -9.49 16 16 C -0.11 -4.92 8.52 22.10 0.19 -4.73 16 17 C 0.01 0.51 6.18 39.32 0.24 0.75 16 18 N -0.48 -17.28 2.64 -478.63 -1.26 -18.55 16 19 C 0.13 3.21 3.40 44.99 0.15 3.36 16 20 C -0.16 -3.85 9.22 71.98 0.66 -3.18 16 21 C -0.16 -3.68 9.13 71.98 0.66 -3.02 16 22 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.08 1.45 6.92 -2.38 -0.02 1.43 16 25 H 0.13 5.43 8.06 -2.91 -0.02 5.41 16 26 H 0.09 5.85 6.14 -2.91 -0.02 5.83 16 27 H 0.28 14.72 8.30 -92.71 -0.77 13.95 16 28 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 29 H 0.12 4.60 5.59 -2.91 -0.02 4.58 16 30 H 0.12 2.22 6.46 -2.39 -0.02 2.21 16 31 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.05 1.32 6.04 -2.39 -0.01 1.31 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.32 6.16 -2.38 -0.01 1.30 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -71.28 291.57 6.04 -65.24 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 1.07 Total: 23.98 kcal Atomic # 6 Polarization: -69.96 SS G_CDS: 3.97 Total: -65.99 kcal Atomic # 7 Polarization: -65.84 SS G_CDS: -1.03 Total: -66.87 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -71.28 6.04 -65.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260411923.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.598 kcal (2) G-P(sol) polarization free energy of solvation -71.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds