Wall clock time and date at job start Mon Mar 30 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34916 * 125.23825 * 2 1 4 4 C 1.41058 * 107.79650 * 180.02562 * 3 2 1 5 5 C 1.40548 * 106.89661 * 0.02562 * 4 3 2 6 6 C 1.38973 * 119.64515 * 180.02562 * 5 4 3 7 7 C 1.38406 * 121.04455 * 359.70352 * 6 5 4 8 8 C 1.37640 * 121.57339 * 0.56697 * 7 6 5 9 9 C 1.40825 * 120.04090 * 359.45537 * 8 7 6 10 10 C 1.40603 * 120.71786 * 180.23031 * 9 8 7 11 11 H 1.07994 * 119.99904 * 207.68400 * 10 9 8 12 12 C 1.40022 * 119.99712 * 27.68880 * 10 9 8 13 13 N 1.30821 * 120.00123 * 11.73431 * 12 10 9 14 14 Si 1.86802 * 119.99943 * 191.74000 * 12 10 9 15 15 H 1.48499 * 109.46980 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46936 * 119.99898 * 14 12 10 17 17 H 1.48499 * 109.46894 * 239.99907 * 14 12 10 18 18 N 1.36547 * 125.23820 * 180.02562 * 2 1 3 19 19 C 1.46499 * 125.56964 * 359.93649 * 18 2 1 20 20 C 1.53001 * 109.46898 * 119.33564 * 19 18 2 21 21 C 1.52998 * 109.46835 * 239.32953 * 19 18 2 22 22 H 1.08997 * 109.47248 * 95.47726 * 1 2 3 23 23 H 1.09005 * 109.46551 * 215.47447 * 1 2 3 24 24 H 1.08995 * 109.46960 * 335.47010 * 1 2 3 25 25 H 1.08001 * 126.09958 * 0.02562 * 3 2 1 26 26 H 1.08004 * 119.47786 * 180.02562 * 6 5 4 27 27 H 1.07999 * 119.21220 * 180.28232 * 7 6 5 28 28 H 1.08000 * 119.97754 * 179.73740 * 8 7 6 29 29 H 0.96996 * 120.00072 * 180.02562 * 13 12 10 30 30 H 1.08998 * 109.47242 * 359.33271 * 19 18 2 31 31 H 1.08999 * 109.47450 * 56.02644 * 20 19 18 32 32 H 1.09001 * 109.47039 * 176.02514 * 20 19 18 33 33 H 1.08999 * 109.47173 * 296.02378 * 20 19 18 34 34 H 1.09000 * 109.47947 * 300.00381 * 21 19 18 35 35 H 1.08999 * 109.47066 * 60.00851 * 21 19 18 36 36 H 1.09004 * 109.47443 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2855 1.1019 0.0000 4 6 3.6312 0.6791 -0.0006 5 6 3.6178 -0.7263 -0.0016 6 6 4.8190 -1.4251 -0.0018 7 6 6.0323 -0.7591 -0.0072 8 6 6.0998 0.6156 -0.0010 9 6 4.9167 1.3795 -0.0004 10 6 4.9691 2.7846 0.0011 11 1 4.1615 3.3546 0.4361 12 6 6.0683 3.4448 -0.5615 13 7 6.9299 2.7794 -1.2870 14 14 6.3046 5.2757 -0.2760 15 1 5.2000 5.7909 0.5723 16 1 7.6029 5.5066 0.4068 17 1 6.2984 5.9849 -1.5807 18 7 2.2949 -1.1153 -0.0005 19 6 1.8133 -2.4988 0.0002 20 6 2.3120 -3.2130 -1.2577 21 6 2.3417 -3.2221 1.2406 22 1 -0.3633 -0.0981 -1.0229 23 1 -0.3632 -0.8370 0.5964 24 1 -0.3633 0.9349 0.4266 25 1 1.9399 2.1252 0.0004 26 1 4.8056 -2.5051 -0.0029 27 1 6.9480 -1.3318 -0.0119 28 1 7.0606 1.1087 -0.0011 29 1 7.6915 3.2366 -1.6765 30 1 0.7234 -2.5042 0.0132 31 1 3.3988 -3.1463 -1.3067 32 1 2.0135 -4.2608 -1.2230 33 1 1.8788 -2.7408 -2.1394 34 1 3.4316 -3.2167 1.2277 35 1 1.9864 -2.7133 2.1367 36 1 1.9838 -4.2517 1.2410 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260412028.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:43 Heat of formation + Delta-G solvation = 25.859498 kcal Electronic energy + Delta-G solvation = -17376.488513 eV Core-core repulsion = 14824.667386 eV Total energy + Delta-G solvation = -2551.821127 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.96908 -37.82610 -35.91165 -35.28866 -31.90630 -31.55000 -29.69657 -28.15449 -27.80984 -26.20176 -23.38076 -21.98644 -21.41420 -20.46752 -18.65494 -17.41864 -16.76256 -16.38390 -15.79504 -15.73742 -15.23052 -14.88413 -14.36967 -13.97646 -13.79354 -13.60077 -13.45061 -13.28412 -13.10157 -12.95275 -12.83707 -12.72549 -12.46269 -12.28583 -12.18798 -11.92377 -11.54439 -11.42945 -11.08723 -11.02484 -9.91408 -8.68601 -8.50999 -8.24072 -6.18574 0.70168 1.31592 1.37572 1.53409 1.57515 2.16100 2.18632 2.22944 2.79347 3.75651 3.82115 4.05619 4.10110 4.21982 4.33989 4.57290 4.64552 4.68146 4.72670 4.77063 4.84006 4.85454 4.94667 4.98583 5.09219 5.16740 5.27033 5.33224 5.37787 5.43168 5.62177 5.66420 6.00050 6.22777 6.34464 6.39306 6.51345 6.82075 6.96374 7.00533 7.15302 8.33939 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031253 B = 0.007147 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.699084 B = 3916.880600 C = 4560.598559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.020 3.980 3 C -0.209 4.209 4 C -0.215 4.215 5 C 0.112 3.888 6 C -0.262 4.262 7 C -0.075 4.075 8 C -0.252 4.252 9 C 0.118 3.882 10 C -0.475 4.475 11 H 0.072 0.928 12 C 0.029 3.971 13 N -0.819 5.819 14 Si 0.988 3.012 15 H -0.258 1.258 16 H -0.262 1.262 17 H -0.264 1.264 18 N -0.471 5.471 19 C 0.129 3.871 20 C -0.161 4.161 21 C -0.161 4.161 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.121 0.879 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.288 0.712 30 H 0.117 0.883 31 H 0.046 0.954 32 H 0.102 0.898 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.809 -7.509 1.651 12.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.235 4.235 4 C -0.219 4.219 5 C 0.005 3.995 6 C -0.284 4.284 7 C -0.094 4.094 8 C -0.273 4.273 9 C 0.115 3.885 10 C -0.503 4.503 11 H 0.091 0.909 12 C -0.186 4.186 13 N -0.445 5.445 14 Si 0.808 3.192 15 H -0.181 1.181 16 H -0.186 1.186 17 H -0.188 1.188 18 N -0.155 5.155 19 C 0.028 3.972 20 C -0.219 4.219 21 C -0.218 4.218 22 H 0.097 0.903 23 H 0.099 0.901 24 H 0.104 0.896 25 H 0.139 0.861 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.135 0.865 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.766 -7.821 1.502 12.602 hybrid contribution 0.801 0.976 -0.113 1.268 sum -8.965 -6.845 1.389 11.364 Atomic orbital electron populations 1.20355 0.85283 1.04096 1.03111 1.20689 0.94680 0.84933 1.08365 1.20309 0.91772 0.97543 1.13829 1.19744 0.93923 0.93149 1.15129 1.18086 0.85046 0.93013 1.03310 1.19352 0.89418 0.97213 1.22401 1.20546 0.96227 0.94231 0.98413 1.20887 0.97500 0.92994 1.15905 1.18508 0.89615 0.93292 0.87060 1.19690 1.04672 0.92218 1.33759 0.90947 1.26884 0.93765 1.05930 0.91992 1.69917 1.11183 1.40298 1.23069 0.85075 0.79408 0.75426 0.79264 1.18147 1.18601 1.18829 1.44122 1.03090 1.05747 1.62547 1.21511 1.00499 0.78296 0.96877 1.22182 1.01641 1.01743 0.96331 1.22183 1.01779 1.01562 0.96298 0.90335 0.90076 0.89634 0.86075 0.87424 0.87418 0.88265 0.90115 0.86511 0.93534 0.87981 0.92986 0.93280 0.92974 0.87983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.78 9.77 71.24 0.70 -1.09 16 2 C 0.02 0.78 6.86 41.06 0.28 1.06 16 3 C -0.21 -9.89 10.62 22.20 0.24 -9.65 16 4 C -0.22 -11.73 6.21 -19.90 -0.12 -11.85 16 5 C 0.11 5.42 6.15 38.93 0.24 5.66 16 6 C -0.26 -12.38 8.51 22.49 0.19 -12.18 16 7 C -0.07 -3.80 9.94 22.17 0.22 -3.58 16 8 C -0.25 -14.48 8.68 22.76 0.20 -14.28 16 9 C 0.12 7.00 5.71 -19.94 -0.11 6.89 16 10 C -0.47 -27.38 9.02 23.28 0.21 -27.17 16 11 H 0.07 4.07 7.87 -2.91 -0.02 4.05 16 12 C 0.03 1.55 5.25 85.28 0.45 2.00 16 13 N -0.82 -45.06 10.84 21.84 0.24 -44.82 16 14 Si 0.99 39.88 29.58 68.60 2.03 41.90 16 15 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 16 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 17 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 18 N -0.47 -18.17 2.65 -478.98 -1.27 -19.44 16 19 C 0.13 3.52 3.46 44.99 0.16 3.68 16 20 C -0.16 -4.12 9.29 71.98 0.67 -3.45 16 21 C -0.16 -4.00 9.22 71.98 0.66 -3.34 16 22 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 23 H 0.08 1.62 7.25 -2.38 -0.02 1.60 16 24 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.12 5.50 8.06 -2.91 -0.02 5.48 16 26 H 0.11 4.41 5.80 -2.91 -0.02 4.39 16 27 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 28 H 0.10 5.91 6.20 -2.91 -0.02 5.89 16 29 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 30 H 0.12 2.47 6.68 -2.39 -0.02 2.45 16 31 H 0.05 1.43 6.10 -2.39 -0.01 1.42 16 32 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.05 1.45 6.04 -2.39 -0.01 1.44 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -69.12 292.29 6.03 -63.09 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 1.07 Total: 26.57 kcal Atomic # 6 Polarization: -71.27 SS G_CDS: 3.97 Total: -67.30 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -1.03 Total: -64.26 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.90 kcal Total: -69.12 6.03 -63.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412028.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.947 kcal (2) G-P(sol) polarization free energy of solvation -69.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds