Wall clock time and date at job start Mon Mar 30 2020 05:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99724 * 2 1 4 4 H 1.48506 * 109.47293 * 270.00586 * 3 2 1 5 5 H 1.48505 * 109.47303 * 30.00718 * 3 2 1 6 6 H 1.48503 * 109.47230 * 150.00566 * 3 2 1 7 7 C 1.37877 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00009 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99814 * 359.97438 * 7 2 1 10 10 H 1.08991 * 110.69346 * 54.83441 * 9 7 2 11 11 C 1.54610 * 110.93807 * 291.43067 * 9 7 2 12 12 C 1.51582 * 102.81312 * 216.04464 * 11 9 7 13 13 C 1.37915 * 131.56212 * 196.29663 * 12 11 9 14 14 C 1.38294 * 120.08203 * 179.67983 * 13 12 11 15 15 C 1.38311 * 119.88346 * 359.97274 * 14 13 12 16 16 C 1.37909 * 120.26231 * 0.10801 * 15 14 13 17 17 C 1.38966 * 107.95013 * 16.17960 * 12 11 9 18 18 N 1.40033 * 110.96734 * 0.46080 * 17 12 11 19 19 C 1.46901 * 111.00053 * 103.71078 * 18 17 12 20 20 C 1.52991 * 109.47349 * 61.95815 * 19 18 17 21 21 C 1.53001 * 117.50199 * 243.62409 * 20 19 18 22 22 C 1.52995 * 117.50233 * 174.99712 * 20 19 18 23 23 H 0.97001 * 120.00274 * 359.97438 * 1 2 3 24 24 H 1.09002 * 110.74039 * 334.37282 * 11 9 7 25 25 H 1.08994 * 110.74285 * 97.71263 * 11 9 7 26 26 H 1.08009 * 119.96029 * 359.66164 * 13 12 11 27 27 H 1.08000 * 120.06134 * 179.97438 * 14 13 12 28 28 H 1.07998 * 119.87203 * 180.10531 * 15 14 13 29 29 H 1.07994 * 119.90056 * 180.02562 * 16 15 14 30 30 H 1.09001 * 109.46845 * 181.95842 * 19 18 17 31 31 H 1.08997 * 109.47174 * 301.95364 * 19 18 17 32 32 H 1.09005 * 115.54796 * 29.33352 * 20 19 18 33 33 H 1.09000 * 117.49645 * 359.97438 * 21 20 19 34 34 H 1.08993 * 117.49864 * 145.01827 * 21 20 19 35 35 H 1.09001 * 117.50387 * 214.98283 * 22 20 19 36 36 H 1.09001 * 117.49905 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5497 -2.5389 -0.8338 11 6 0.5185 -2.7141 1.3439 12 6 0.6373 -4.2103 1.5560 13 6 -0.0390 -5.0723 2.3936 14 6 0.2622 -6.4220 2.3892 15 6 1.2429 -6.9065 1.5427 16 6 1.9233 -6.0485 0.7044 17 6 1.6275 -4.6862 0.7049 18 7 2.1858 -3.6445 -0.0462 19 6 3.5061 -3.2678 0.4760 20 6 4.4571 -4.4613 0.3672 21 6 5.0044 -5.0496 1.6692 22 6 5.9205 -4.2361 0.7527 23 1 -0.4850 0.8400 0.0004 24 1 1.0164 -2.1697 2.1462 25 1 -0.5273 -2.4172 1.2654 26 1 -0.8047 -4.6927 3.0540 27 1 -0.2674 -7.0966 3.0456 28 1 1.4768 -7.9608 1.5382 29 1 2.6876 -6.4331 0.0455 30 1 3.9018 -2.4339 -0.1038 31 1 3.4126 -2.9718 1.5209 32 1 4.2528 -5.1521 -0.4509 33 1 4.6873 -4.5861 2.6034 34 1 5.1601 -6.1277 1.7080 35 1 6.6789 -4.7790 0.1886 36 1 6.2057 -3.2377 1.0843 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260490414.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:18 Heat of formation + Delta-G solvation = 70.056874 kcal Electronic energy + Delta-G solvation = -17607.862588 eV Core-core repulsion = 15057.958003 eV Total energy + Delta-G solvation = -2549.904585 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.05227 -37.07688 -35.84427 -32.65529 -31.26331 -29.31457 -28.16299 -25.52742 -24.86593 -22.08882 -21.54021 -20.93860 -19.96032 -19.62811 -16.51466 -15.82257 -15.45026 -15.01241 -14.73650 -14.24841 -13.88076 -13.74773 -13.12209 -12.72164 -12.48600 -12.06179 -11.88983 -11.49823 -11.29774 -11.19965 -11.06037 -10.83500 -10.67859 -10.38712 -10.17209 -10.03431 -9.89427 -9.54152 -8.91704 -8.65931 -8.44240 -8.12986 -6.96772 -6.17520 -4.22746 1.98235 2.00900 3.23518 3.30646 3.32426 4.14493 4.29767 4.35035 4.70313 5.13607 5.18265 5.30978 5.33062 5.45712 5.54308 5.62773 5.87355 5.88233 6.00637 6.08854 6.15855 6.24212 6.33614 6.38453 6.48025 6.58025 6.63594 6.79158 6.82574 6.98612 7.03718 7.17200 7.32107 7.48801 7.63291 7.78928 7.83803 8.08515 8.47219 8.81989 9.43897 10.92173 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021177 B = 0.009070 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.851029 B = 3086.474317 C = 4139.768309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.076 0.924 9 C 0.218 3.782 10 H 0.058 0.942 11 C -0.089 4.089 12 C -0.134 4.134 13 C -0.102 4.102 14 C -0.149 4.149 15 C -0.120 4.120 16 C -0.118 4.118 17 C 0.108 3.892 18 N -0.497 5.497 19 C 0.101 3.899 20 C -0.143 4.143 21 C -0.182 4.182 22 C -0.183 4.183 23 H 0.264 0.736 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.036 0.964 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.963 -9.262 3.584 11.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.571 4.571 8 H 0.093 0.907 9 C 0.113 3.887 10 H 0.076 0.924 11 C -0.128 4.128 12 C -0.137 4.137 13 C -0.121 4.121 14 C -0.167 4.167 15 C -0.139 4.139 16 C -0.138 4.138 17 C 0.011 3.989 18 N -0.214 5.214 19 C -0.024 4.024 20 C -0.162 4.162 21 C -0.219 4.219 22 C -0.221 4.221 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.116 0.884 31 H 0.054 0.946 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.916 -9.222 3.017 10.877 hybrid contribution 0.131 1.095 0.811 1.369 sum 5.047 -8.127 3.827 10.304 Atomic orbital electron populations 1.69965 1.05986 1.27061 1.49135 1.24967 0.94862 0.99281 0.94442 0.86523 0.79781 0.83028 0.78294 1.20432 1.21151 1.19782 1.21414 0.93609 0.89576 1.52530 0.90668 1.20226 0.89469 0.86264 0.92712 0.92374 1.21851 1.02470 0.87337 1.01162 1.21728 0.98618 0.97943 0.95415 1.20388 0.99683 0.92869 0.99137 1.20839 0.99747 0.95091 1.01060 1.20714 0.97286 0.98633 0.97282 1.20431 1.01429 0.91102 1.00866 1.19828 0.95040 0.92529 0.91522 1.60341 1.04319 1.07815 1.48906 1.21721 0.87153 0.94997 0.98521 1.22536 0.94319 1.01058 0.98279 1.22961 1.04870 0.98952 0.95081 1.22911 0.93506 1.01419 1.04255 0.92669 0.91367 0.90712 0.87161 0.86982 0.86866 0.86909 0.88396 0.94582 0.87698 0.89332 0.89519 0.89323 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.46 12.88 55.43 0.71 -23.75 16 2 C 0.07 1.81 5.38 -17.82 -0.10 1.71 16 3 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.53 -13.89 7.78 -34.44 -0.27 -14.16 16 8 H 0.08 1.90 4.92 -52.49 -0.26 1.64 16 9 C 0.22 5.45 3.18 -67.47 -0.21 5.24 16 10 H 0.06 1.62 8.14 -51.93 -0.42 1.20 16 11 C -0.09 -2.11 5.97 -26.60 -0.16 -2.27 16 12 C -0.13 -2.82 6.23 -104.04 -0.65 -3.47 16 13 C -0.10 -1.84 10.03 -39.68 -0.40 -2.24 16 14 C -0.15 -2.34 10.06 -39.53 -0.40 -2.74 16 15 C -0.12 -1.87 10.02 -39.68 -0.40 -2.26 16 16 C -0.12 -2.06 8.96 -39.27 -0.35 -2.41 16 17 C 0.11 2.21 5.29 -83.41 -0.44 1.77 16 18 N -0.50 -10.94 5.11 -162.88 -0.83 -11.77 16 19 C 0.10 2.02 4.10 -3.83 -0.02 2.00 16 20 C -0.14 -2.34 4.21 -90.63 -0.38 -2.72 16 21 C -0.18 -2.62 10.13 -26.73 -0.27 -2.89 16 22 C -0.18 -2.54 10.25 -26.73 -0.27 -2.81 16 23 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.07 1.67 7.92 -51.93 -0.41 1.26 16 25 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 26 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 27 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.11 1.80 6.91 -52.49 -0.36 1.44 16 30 H 0.10 2.06 5.69 -51.93 -0.30 1.76 16 31 H 0.04 0.76 7.87 -51.93 -0.41 0.36 16 32 H 0.10 1.71 7.18 -51.93 -0.37 1.34 16 33 H 0.09 1.34 8.03 -51.93 -0.42 0.93 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 292.15 15.07 4.40 4.40 Total: -1.00 -27.09 292.15 -10.09 -37.19 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.04 Total: 5.70 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -4.31 Total: -27.24 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.12 Total: -35.52 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.09 -10.09 -37.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260490414.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.243 kcal (2) G-P(sol) polarization free energy of solvation -27.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds