Wall clock time and date at job start Mon Mar 30 2020 05:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99724 * 2 1 4 4 H 1.48506 * 109.47293 * 270.00586 * 3 2 1 5 5 H 1.48505 * 109.47303 * 30.00718 * 3 2 1 6 6 H 1.48503 * 109.47230 * 150.00566 * 3 2 1 7 7 C 1.37877 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00009 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99814 * 359.97438 * 7 2 1 10 10 H 1.08991 * 110.69346 * 54.83441 * 9 7 2 11 11 C 1.54610 * 110.93807 * 291.43067 * 9 7 2 12 12 C 1.51582 * 102.81312 * 216.04464 * 11 9 7 13 13 C 1.37915 * 131.56212 * 196.29663 * 12 11 9 14 14 C 1.38294 * 120.08203 * 179.67983 * 13 12 11 15 15 C 1.38311 * 119.88346 * 359.97274 * 14 13 12 16 16 C 1.37909 * 120.26231 * 0.10801 * 15 14 13 17 17 C 1.38966 * 107.95013 * 16.17960 * 12 11 9 18 18 N 1.40033 * 110.96734 * 0.46080 * 17 12 11 19 19 C 1.46901 * 111.00053 * 103.71078 * 18 17 12 20 20 C 1.52991 * 109.47349 * 61.95815 * 19 18 17 21 21 C 1.53001 * 117.50199 * 243.62409 * 20 19 18 22 22 C 1.52995 * 117.50233 * 174.99712 * 20 19 18 23 23 H 0.97001 * 120.00274 * 359.97438 * 1 2 3 24 24 H 1.09002 * 110.74039 * 334.37282 * 11 9 7 25 25 H 1.08994 * 110.74285 * 97.71263 * 11 9 7 26 26 H 1.08009 * 119.96029 * 359.66164 * 13 12 11 27 27 H 1.08000 * 120.06134 * 179.97438 * 14 13 12 28 28 H 1.07998 * 119.87203 * 180.10531 * 15 14 13 29 29 H 1.07994 * 119.90056 * 180.02562 * 16 15 14 30 30 H 1.09001 * 109.46845 * 181.95842 * 19 18 17 31 31 H 1.08997 * 109.47174 * 301.95364 * 19 18 17 32 32 H 1.09005 * 115.54796 * 29.33352 * 20 19 18 33 33 H 1.09000 * 117.49645 * 359.97438 * 21 20 19 34 34 H 1.08993 * 117.49864 * 145.01827 * 21 20 19 35 35 H 1.09001 * 117.50387 * 214.98283 * 22 20 19 36 36 H 1.09001 * 117.49905 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5497 -2.5389 -0.8338 11 6 0.5185 -2.7141 1.3439 12 6 0.6373 -4.2103 1.5560 13 6 -0.0390 -5.0723 2.3936 14 6 0.2622 -6.4220 2.3892 15 6 1.2429 -6.9065 1.5427 16 6 1.9233 -6.0485 0.7044 17 6 1.6275 -4.6862 0.7049 18 7 2.1858 -3.6445 -0.0462 19 6 3.5061 -3.2678 0.4760 20 6 4.4571 -4.4613 0.3672 21 6 5.0044 -5.0496 1.6692 22 6 5.9205 -4.2361 0.7527 23 1 -0.4850 0.8400 0.0004 24 1 1.0164 -2.1697 2.1462 25 1 -0.5273 -2.4172 1.2654 26 1 -0.8047 -4.6927 3.0540 27 1 -0.2674 -7.0966 3.0456 28 1 1.4768 -7.9608 1.5382 29 1 2.6876 -6.4331 0.0455 30 1 3.9018 -2.4339 -0.1038 31 1 3.4126 -2.9718 1.5209 32 1 4.2528 -5.1521 -0.4509 33 1 4.6873 -4.5861 2.6034 34 1 5.1601 -6.1277 1.7080 35 1 6.6789 -4.7790 0.1886 36 1 6.2057 -3.2377 1.0843 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260490414.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:17 Heat of formation + Delta-G solvation = 55.930546 kcal Electronic energy + Delta-G solvation = -17608.475152 eV Core-core repulsion = 15057.958003 eV Total energy + Delta-G solvation = -2550.517149 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.63199 -38.38245 -37.32359 -34.62512 -32.81467 -30.82256 -29.88642 -27.17398 -26.65568 -23.21354 -23.15737 -22.34624 -21.68130 -21.04902 -18.35089 -17.34916 -17.14331 -16.45815 -16.40263 -15.74696 -15.45597 -15.14420 -14.61029 -14.32334 -14.15823 -13.68927 -13.46625 -13.07815 -12.94450 -12.83054 -12.67044 -12.33730 -12.24130 -11.98254 -11.88910 -11.57049 -11.22868 -11.05341 -10.72712 -10.57375 -10.05129 -9.57477 -8.60129 -8.22623 -6.34608 0.57006 0.60473 1.39561 1.40053 1.50115 2.36373 2.86878 2.98079 3.07065 3.20961 3.88957 3.96027 4.12002 4.14381 4.22282 4.31500 4.48887 4.51096 4.66844 4.70178 4.73873 4.80999 4.89974 4.91323 5.03185 5.05868 5.18814 5.30197 5.31755 5.38991 5.53183 5.62489 5.68185 5.73536 5.76696 5.96359 6.12859 6.27613 6.73043 6.81186 7.35510 8.87365 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021177 B = 0.009070 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.851029 B = 3086.474317 C = 4139.768309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.018 3.982 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.216 3.784 10 H 0.015 0.985 11 C -0.074 4.074 12 C -0.170 4.170 13 C -0.109 4.109 14 C -0.137 4.137 15 C -0.106 4.106 16 C -0.116 4.116 17 C 0.084 3.916 18 N -0.503 5.503 19 C 0.109 3.891 20 C -0.159 4.159 21 C -0.170 4.170 22 C -0.167 4.167 23 H 0.264 0.736 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.121 0.879 27 H 0.153 0.847 28 H 0.159 0.841 29 H 0.131 0.869 30 H 0.077 0.923 31 H 0.012 0.988 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.593 -11.935 4.420 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.183 4.183 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.110 3.890 10 H 0.033 0.967 11 C -0.114 4.114 12 C -0.172 4.172 13 C -0.128 4.128 14 C -0.155 4.155 15 C -0.124 4.124 16 C -0.136 4.136 17 C -0.013 4.013 18 N -0.220 5.220 19 C -0.016 4.016 20 C -0.178 4.178 21 C -0.206 4.206 22 C -0.204 4.204 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.139 0.861 27 H 0.171 0.829 28 H 0.176 0.824 29 H 0.149 0.851 30 H 0.095 0.905 31 H 0.031 0.969 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.559 -11.916 3.859 14.139 hybrid contribution -0.416 1.800 0.579 1.936 sum 6.143 -10.116 4.438 12.640 Atomic orbital electron populations 1.70102 1.07480 1.27791 1.50241 1.25804 0.95655 1.02702 0.94114 0.85489 0.78688 0.78692 0.78437 1.19866 1.20883 1.18871 1.21740 0.94018 0.90396 1.52040 0.90244 1.19928 0.89719 0.87579 0.91752 0.96676 1.21443 1.00160 0.90051 0.99699 1.21608 1.01093 0.96310 0.98235 1.20660 0.99618 0.93957 0.98528 1.21306 0.99211 0.94150 1.00817 1.21248 0.95545 1.00432 0.95171 1.20714 1.01929 0.89594 1.01370 1.20023 0.95644 0.93511 0.92123 1.60277 1.04479 1.07165 1.50097 1.21566 0.87179 0.96449 0.96377 1.22299 0.95278 1.00173 1.00034 1.22993 1.03850 1.00306 0.93494 1.23024 0.92395 1.01633 1.03341 0.92700 0.93659 0.93344 0.86091 0.82912 0.82352 0.85131 0.90472 0.96930 0.87347 0.90547 0.87062 0.86644 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.57 12.88 21.45 0.28 -53.29 16 2 C 0.02 0.97 5.38 84.65 0.46 1.43 16 3 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 7 C -0.54 -29.99 7.78 25.60 0.20 -29.79 16 8 H 0.08 4.22 4.92 -2.91 -0.01 4.20 16 9 C 0.22 11.61 3.18 44.52 0.14 11.76 16 10 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 11 C -0.07 -3.79 5.97 30.68 0.18 -3.60 16 12 C -0.17 -7.34 6.23 -19.49 -0.12 -7.47 16 13 C -0.11 -3.82 10.03 22.21 0.22 -3.59 16 14 C -0.14 -3.73 10.06 22.30 0.22 -3.51 16 15 C -0.11 -2.77 10.02 22.21 0.22 -2.55 16 16 C -0.12 -3.75 8.96 22.47 0.20 -3.55 16 17 C 0.08 3.45 5.29 38.29 0.20 3.65 16 18 N -0.50 -23.13 5.11 -669.22 -3.42 -26.55 16 19 C 0.11 4.52 4.10 86.30 0.35 4.88 16 20 C -0.16 -5.00 4.21 -10.80 -0.05 -5.05 16 21 C -0.17 -4.45 10.13 30.60 0.31 -4.14 16 22 C -0.17 -4.20 10.25 30.59 0.31 -3.88 16 23 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 24 H 0.04 2.41 7.92 -2.39 -0.02 2.39 16 25 H 0.05 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.12 3.86 8.06 -2.91 -0.02 3.83 16 27 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 28 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 29 H 0.13 3.72 6.91 -2.91 -0.02 3.70 16 30 H 0.08 3.41 5.69 -2.39 -0.01 3.39 16 31 H 0.01 0.56 7.87 -2.39 -0.02 0.54 16 32 H 0.11 3.34 7.18 -2.38 -0.02 3.33 16 33 H 0.08 2.20 8.03 -2.39 -0.02 2.19 16 34 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -62.98 292.15 2.80 -60.17 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 1.06 Total: 19.74 kcal Atomic # 6 Polarization: -48.29 SS G_CDS: 2.86 Total: -45.42 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -3.15 Total: -79.84 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -62.98 2.80 -60.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260490414.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.101 kcal (2) G-P(sol) polarization free energy of solvation -62.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds