Wall clock time and date at job start Mon Mar 30 2020 05:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00165 * 2 1 4 4 H 1.48499 * 109.47176 * 240.00103 * 3 2 1 5 5 H 1.48507 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47045 * 120.00110 * 3 2 1 7 7 C 1.37876 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99917 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00210 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.84417 * 303.39926 * 9 7 2 11 11 C 1.54602 * 110.77928 * 66.80198 * 9 7 2 12 12 C 1.51578 * 102.83597 * 92.74667 * 11 9 7 13 13 C 1.37920 * 131.56168 * 196.34369 * 12 11 9 14 14 C 1.38300 * 120.08041 * 179.28447 * 13 12 11 15 15 C 1.38310 * 119.88253 * 359.97438 * 14 13 12 16 16 C 1.37905 * 120.26271 * 0.12212 * 15 14 13 17 17 C 1.38955 * 107.95422 * 15.93675 * 12 11 9 18 18 N 1.40046 * 110.96078 * 0.80512 * 17 12 11 19 19 C 1.46899 * 110.99894 * 103.38331 * 18 17 12 20 20 C 1.52997 * 109.47254 * 69.87629 * 19 18 17 21 21 C 1.52998 * 117.50310 * 243.74634 * 20 19 18 22 22 C 1.52996 * 117.50163 * 175.08608 * 20 19 18 23 23 H 0.97001 * 119.99702 * 359.97438 * 1 2 3 24 24 H 1.09002 * 110.73510 * 334.41400 * 11 9 7 25 25 H 1.08994 * 110.73880 * 211.08497 * 11 9 7 26 26 H 1.08002 * 119.95696 * 359.29244 * 13 12 11 27 27 H 1.07998 * 120.05796 * 179.97438 * 14 13 12 28 28 H 1.08000 * 119.86015 * 180.14501 * 15 14 13 29 29 H 1.08002 * 119.89648 * 180.02562 * 16 15 14 30 30 H 1.09002 * 109.47043 * 189.87699 * 19 18 17 31 31 H 1.09001 * 109.47354 * 309.87761 * 19 18 17 32 32 H 1.09008 * 115.55245 * 29.41328 * 20 19 18 33 33 H 1.09000 * 117.49561 * 359.97438 * 21 20 19 34 34 H 1.09000 * 117.50593 * 145.01245 * 21 20 19 35 35 H 1.09004 * 117.49898 * 214.97822 * 22 20 19 36 36 H 1.09002 * 117.49721 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.5717 -2.5548 0.8502 11 6 0.4831 -2.6891 -1.3289 12 6 1.4661 -3.4711 -2.1772 13 6 1.5202 -3.7028 -3.5357 14 6 2.5513 -4.4538 -4.0703 15 6 3.5287 -4.9719 -3.2401 16 6 3.4780 -4.7448 -1.8808 17 6 2.4398 -3.9923 -1.3339 18 7 2.1862 -3.6451 -0.0011 19 6 1.6262 -4.7820 0.7417 20 6 2.7058 -5.8495 0.9304 21 6 2.4797 -7.2085 0.2649 22 6 2.3520 -7.0690 1.7839 23 1 -0.4850 0.8401 0.0004 24 1 0.2595 -1.7255 -1.7866 25 1 -0.4298 -3.2626 -1.1684 26 1 0.7566 -3.2972 -4.1829 27 1 2.5931 -4.6354 -5.1340 28 1 4.3349 -5.5564 -3.6582 29 1 4.2445 -5.1518 -1.2380 30 1 1.2767 -4.4423 1.7167 31 1 0.7909 -5.2048 0.1834 32 1 3.7296 -5.4787 0.9824 33 1 1.5615 -7.3421 -0.3071 34 1 3.3546 -7.7319 -0.1207 35 1 3.1430 -7.5008 2.3970 36 1 1.3501 -7.1106 2.2112 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260490420.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:20 Heat of formation + Delta-G solvation = 63.608342 kcal Electronic energy + Delta-G solvation = -17519.789733 eV Core-core repulsion = 14969.605519 eV Total energy + Delta-G solvation = -2550.184214 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.99551 -37.14128 -35.80156 -32.70362 -31.13428 -29.16022 -28.18830 -25.53341 -24.82393 -22.19685 -21.65463 -20.74510 -19.98090 -19.77962 -16.63731 -15.92235 -15.27921 -15.02728 -14.48682 -14.23525 -14.04470 -13.75504 -13.21012 -12.75874 -12.48422 -12.07437 -11.68923 -11.46087 -11.34185 -11.31091 -11.01046 -10.88612 -10.71195 -10.36628 -10.21984 -10.05953 -9.88194 -9.62560 -9.22720 -8.52306 -8.49940 -8.05160 -6.97438 -6.07320 -4.10413 2.05132 2.08668 3.32669 3.35936 3.40111 4.02385 4.34759 4.41782 4.65986 5.04131 5.17005 5.22046 5.28523 5.50406 5.54777 5.66506 5.76767 5.77893 5.95880 6.04947 6.10875 6.13797 6.18083 6.28187 6.33149 6.51598 6.58746 6.62073 6.72913 6.95527 7.08101 7.19550 7.28416 7.45967 7.66285 7.81161 8.03647 8.24234 8.40846 8.95668 9.54105 11.00612 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.008527 C = 0.006941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.238772 B = 3282.928328 C = 4033.234468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.494 4.494 8 H 0.064 0.936 9 C 0.220 3.780 10 H 0.050 0.950 11 C -0.097 4.097 12 C -0.118 4.118 13 C -0.103 4.103 14 C -0.148 4.148 15 C -0.122 4.122 16 C -0.118 4.118 17 C 0.116 3.884 18 N -0.492 5.492 19 C 0.093 3.907 20 C -0.138 4.138 21 C -0.180 4.180 22 C -0.183 4.183 23 H 0.263 0.737 24 H 0.094 0.906 25 H 0.046 0.954 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.944 -11.075 -2.299 11.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.533 4.533 8 H 0.082 0.918 9 C 0.115 3.885 10 H 0.068 0.932 11 C -0.136 4.136 12 C -0.120 4.120 13 C -0.122 4.122 14 C -0.167 4.167 15 C -0.141 4.141 16 C -0.138 4.138 17 C 0.019 3.981 18 N -0.209 5.209 19 C -0.033 4.033 20 C -0.156 4.156 21 C -0.217 4.217 22 C -0.221 4.221 23 H 0.072 0.928 24 H 0.113 0.887 25 H 0.065 0.935 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.128 0.872 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.228 -10.791 -1.944 11.430 hybrid contribution -0.244 0.775 -0.484 0.946 sum 2.984 -10.015 -2.428 10.729 Atomic orbital electron populations 1.69944 1.05854 1.27005 1.50570 1.24928 0.94917 0.99161 0.95144 0.86538 0.79483 0.82549 0.78776 1.20232 1.21301 1.20131 1.20927 0.93523 0.88820 1.50028 0.91767 1.20250 0.88232 0.87141 0.92869 0.93231 1.21838 0.94970 0.98976 0.97842 1.21475 0.97272 0.99179 0.94088 1.20366 0.98630 0.99340 0.93868 1.20822 0.96163 1.00873 0.98797 1.20688 0.98969 1.01240 0.93176 1.20390 0.97679 1.01275 0.94467 1.19621 0.93628 0.94692 0.90118 1.60242 1.45531 1.05938 1.09193 1.21656 0.93532 0.89875 0.98229 1.22378 1.01049 0.88735 1.03475 1.22981 1.02836 1.00998 0.94878 1.22935 1.02502 1.03049 0.93618 0.92768 0.88725 0.93534 0.87210 0.87023 0.86915 0.86986 0.90329 0.95064 0.87239 0.89295 0.89275 0.89133 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.09 12.31 55.43 0.68 -24.41 16 2 C 0.06 1.65 5.15 -17.82 -0.09 1.56 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.49 -13.66 8.78 -34.44 -0.30 -13.96 16 8 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 9 C 0.22 5.50 2.55 -67.47 -0.17 5.32 16 10 H 0.05 1.31 7.60 -51.93 -0.39 0.91 16 11 C -0.10 -2.31 6.17 -26.61 -0.16 -2.47 16 12 C -0.12 -2.55 6.22 -104.04 -0.65 -3.19 16 13 C -0.10 -1.95 10.03 -39.68 -0.40 -2.35 16 14 C -0.15 -2.44 10.06 -39.53 -0.40 -2.84 16 15 C -0.12 -1.98 10.02 -39.68 -0.40 -2.38 16 16 C -0.12 -2.14 9.27 -39.27 -0.36 -2.51 16 17 C 0.12 2.45 5.25 -83.41 -0.44 2.01 16 18 N -0.49 -10.78 4.72 -162.87 -0.77 -11.55 16 19 C 0.09 1.70 5.03 -3.83 -0.02 1.69 16 20 C -0.14 -2.11 4.47 -90.62 -0.40 -2.51 16 21 C -0.18 -2.38 10.18 -26.70 -0.27 -2.65 16 22 C -0.18 -2.30 10.25 -26.70 -0.27 -2.57 16 23 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.09 2.48 6.94 -51.93 -0.36 2.11 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 27 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.11 1.86 7.44 -52.49 -0.39 1.47 16 30 H 0.08 1.43 7.85 -51.93 -0.41 1.02 16 31 H 0.03 0.58 7.79 -51.93 -0.40 0.17 16 32 H 0.11 1.75 7.87 -51.92 -0.41 1.34 16 33 H 0.09 1.21 8.03 -51.93 -0.42 0.80 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 297.71 15.07 4.49 4.49 Total: -1.00 -28.27 297.71 -10.25 -38.52 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.29 Total: 3.34 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -4.34 Total: -26.85 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.09 Total: -35.96 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.27 -10.25 -38.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260490420.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.128 kcal (2) G-P(sol) polarization free energy of solvation -28.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds