Wall clock time and date at job start Mon Mar 30 2020 05:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00165 * 2 1 4 4 H 1.48499 * 109.47176 * 240.00103 * 3 2 1 5 5 H 1.48507 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47045 * 120.00110 * 3 2 1 7 7 C 1.37876 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99917 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00210 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.84417 * 303.39926 * 9 7 2 11 11 C 1.54602 * 110.77928 * 66.80198 * 9 7 2 12 12 C 1.51578 * 102.83597 * 92.74667 * 11 9 7 13 13 C 1.37920 * 131.56168 * 196.34369 * 12 11 9 14 14 C 1.38300 * 120.08041 * 179.28447 * 13 12 11 15 15 C 1.38310 * 119.88253 * 359.97438 * 14 13 12 16 16 C 1.37905 * 120.26271 * 0.12212 * 15 14 13 17 17 C 1.38955 * 107.95422 * 15.93675 * 12 11 9 18 18 N 1.40046 * 110.96078 * 0.80512 * 17 12 11 19 19 C 1.46899 * 110.99894 * 103.38331 * 18 17 12 20 20 C 1.52997 * 109.47254 * 69.87629 * 19 18 17 21 21 C 1.52998 * 117.50310 * 243.74634 * 20 19 18 22 22 C 1.52996 * 117.50163 * 175.08608 * 20 19 18 23 23 H 0.97001 * 119.99702 * 359.97438 * 1 2 3 24 24 H 1.09002 * 110.73510 * 334.41400 * 11 9 7 25 25 H 1.08994 * 110.73880 * 211.08497 * 11 9 7 26 26 H 1.08002 * 119.95696 * 359.29244 * 13 12 11 27 27 H 1.07998 * 120.05796 * 179.97438 * 14 13 12 28 28 H 1.08000 * 119.86015 * 180.14501 * 15 14 13 29 29 H 1.08002 * 119.89648 * 180.02562 * 16 15 14 30 30 H 1.09002 * 109.47043 * 189.87699 * 19 18 17 31 31 H 1.09001 * 109.47354 * 309.87761 * 19 18 17 32 32 H 1.09008 * 115.55245 * 29.41328 * 20 19 18 33 33 H 1.09000 * 117.49561 * 359.97438 * 21 20 19 34 34 H 1.09000 * 117.50593 * 145.01245 * 21 20 19 35 35 H 1.09004 * 117.49898 * 214.97822 * 22 20 19 36 36 H 1.09002 * 117.49721 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.5717 -2.5548 0.8502 11 6 0.4831 -2.6891 -1.3289 12 6 1.4661 -3.4711 -2.1772 13 6 1.5202 -3.7028 -3.5357 14 6 2.5513 -4.4538 -4.0703 15 6 3.5287 -4.9719 -3.2401 16 6 3.4780 -4.7448 -1.8808 17 6 2.4398 -3.9923 -1.3339 18 7 2.1862 -3.6451 -0.0011 19 6 1.6262 -4.7820 0.7417 20 6 2.7058 -5.8495 0.9304 21 6 2.4797 -7.2085 0.2649 22 6 2.3520 -7.0690 1.7839 23 1 -0.4850 0.8401 0.0004 24 1 0.2595 -1.7255 -1.7866 25 1 -0.4298 -3.2626 -1.1684 26 1 0.7566 -3.2972 -4.1829 27 1 2.5931 -4.6354 -5.1340 28 1 4.3349 -5.5564 -3.6582 29 1 4.2445 -5.1518 -1.2380 30 1 1.2767 -4.4423 1.7167 31 1 0.7909 -5.2048 0.1834 32 1 3.7296 -5.4787 0.9824 33 1 1.5615 -7.3421 -0.3071 34 1 3.3546 -7.7319 -0.1207 35 1 3.1430 -7.5008 2.3970 36 1 1.3501 -7.1106 2.2112 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260490420.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:20 Heat of formation + Delta-G solvation = 49.085062 kcal Electronic energy + Delta-G solvation = -17520.419510 eV Core-core repulsion = 14969.605519 eV Total energy + Delta-G solvation = -2550.813991 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.56812 -38.36395 -37.28937 -34.70173 -32.72424 -30.59975 -29.95955 -27.23222 -26.58331 -23.27589 -23.21922 -22.14850 -21.69305 -21.13416 -18.54205 -17.47214 -16.97471 -16.46676 -15.97022 -15.95207 -15.47936 -15.10600 -14.73661 -14.37962 -13.93476 -13.92838 -13.28089 -13.09531 -12.96454 -12.68637 -12.57657 -12.39239 -12.33486 -12.13260 -11.91525 -11.60397 -11.36265 -11.04803 -10.83352 -10.60295 -10.07607 -9.53414 -8.60408 -8.16442 -6.29057 0.61809 0.63491 1.39184 1.41079 1.48957 2.37954 2.86456 2.99201 3.07239 3.16898 3.86687 3.93575 4.08174 4.11573 4.24380 4.31903 4.40814 4.52811 4.58914 4.66646 4.71751 4.79015 4.80630 4.86989 4.97154 5.04878 5.11816 5.25255 5.29620 5.36262 5.49471 5.61556 5.69964 5.72693 5.84466 6.09836 6.15200 6.44017 6.69031 6.79837 7.38928 8.88776 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.008527 C = 0.006941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.238772 B = 3282.928328 C = 4033.234468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.016 3.984 3 Si 0.960 3.040 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.512 4.512 8 H 0.049 0.951 9 C 0.219 3.781 10 H 0.020 0.980 11 C -0.086 4.086 12 C -0.154 4.154 13 C -0.113 4.113 14 C -0.138 4.138 15 C -0.109 4.109 16 C -0.120 4.120 17 C 0.094 3.906 18 N -0.501 5.501 19 C 0.096 3.904 20 C -0.157 4.157 21 C -0.167 4.167 22 C -0.165 4.165 23 H 0.265 0.735 24 H 0.061 0.939 25 H 0.042 0.958 26 H 0.120 0.880 27 H 0.152 0.848 28 H 0.157 0.843 29 H 0.128 0.872 30 H 0.066 0.934 31 H 0.022 0.978 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.932 -12.748 -3.637 14.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.183 4.183 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.551 4.551 8 H 0.067 0.933 9 C 0.113 3.887 10 H 0.038 0.962 11 C -0.125 4.125 12 C -0.157 4.157 13 C -0.131 4.131 14 C -0.157 4.157 15 C -0.127 4.127 16 C -0.140 4.140 17 C -0.002 4.002 18 N -0.218 5.218 19 C -0.030 4.030 20 C -0.176 4.176 21 C -0.204 4.204 22 C -0.202 4.202 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.138 0.862 27 H 0.169 0.831 28 H 0.174 0.826 29 H 0.146 0.854 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.219 -12.483 -3.283 13.923 hybrid contribution -0.860 1.224 -0.112 1.500 sum 4.359 -11.260 -3.395 12.542 Atomic orbital electron populations 1.70052 1.07038 1.27771 1.50943 1.25671 0.95742 1.02240 0.94658 0.85586 0.78390 0.78754 0.78787 1.20050 1.20370 1.19532 1.21105 0.92901 0.90497 1.50547 0.93283 1.19986 0.88416 0.88009 0.92297 0.96166 1.21505 0.95525 0.97704 0.97793 1.21427 0.97581 1.01107 0.95579 1.20651 0.99957 0.99768 0.92773 1.21274 0.94637 0.98894 1.00871 1.21207 0.99448 0.99971 0.92069 1.20673 0.96926 1.00575 0.95841 1.19839 0.94820 0.96290 0.89287 1.60203 1.44732 1.06240 1.10651 1.21651 0.94561 0.89839 0.96931 1.22144 0.99412 0.88857 1.07149 1.23024 1.03297 0.98727 0.95391 1.23049 1.03404 1.00079 0.93658 0.92642 0.92056 0.94003 0.86222 0.83060 0.82553 0.85412 0.91563 0.95928 0.87849 0.89931 0.87284 0.86928 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.58 12.31 21.45 0.26 -53.31 16 2 C 0.02 0.92 5.15 84.65 0.44 1.35 16 3 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.51 -29.58 8.78 25.60 0.22 -29.36 16 8 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 9 C 0.22 11.63 2.55 44.52 0.11 11.74 16 10 H 0.02 1.17 7.60 -2.39 -0.02 1.15 16 11 C -0.09 -4.35 6.17 30.67 0.19 -4.16 16 12 C -0.15 -6.82 6.22 -19.49 -0.12 -6.94 16 13 C -0.11 -4.13 10.03 22.21 0.22 -3.91 16 14 C -0.14 -4.04 10.06 22.30 0.22 -3.81 16 15 C -0.11 -3.05 10.02 22.21 0.22 -2.83 16 16 C -0.12 -4.09 9.27 22.47 0.21 -3.88 16 17 C 0.09 3.98 5.25 38.28 0.20 4.18 16 18 N -0.50 -22.84 4.72 -669.19 -3.16 -26.00 16 19 C 0.10 3.65 5.03 86.30 0.43 4.09 16 20 C -0.16 -4.67 4.47 -10.80 -0.05 -4.72 16 21 C -0.17 -4.03 10.18 30.62 0.31 -3.72 16 22 C -0.16 -3.76 10.25 30.62 0.31 -3.45 16 23 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 24 H 0.06 3.42 6.94 -2.39 -0.02 3.41 16 25 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.12 4.01 8.06 -2.91 -0.02 3.98 16 27 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 28 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 29 H 0.13 3.89 7.44 -2.91 -0.02 3.86 16 30 H 0.07 2.58 7.85 -2.39 -0.02 2.56 16 31 H 0.02 0.88 7.79 -2.39 -0.02 0.86 16 32 H 0.10 3.21 7.87 -2.38 -0.02 3.20 16 33 H 0.08 2.11 8.03 -2.39 -0.02 2.09 16 34 H 0.11 2.20 8.14 -2.39 -0.02 2.19 16 35 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -63.89 297.71 3.11 -60.78 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 1.05 Total: 17.04 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 2.93 Total: -45.43 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -2.90 Total: -79.31 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -63.89 3.11 -60.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260490420.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.864 kcal (2) G-P(sol) polarization free energy of solvation -63.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds