Wall clock time and date at job start Mon Mar 30 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34722 * 125.14763 * 2 1 4 4 C 1.41594 * 107.92513 * 179.97438 * 3 2 1 5 5 C 1.40527 * 133.31371 * 179.97438 * 4 3 2 6 6 C 1.35721 * 120.15240 * 179.97438 * 5 4 3 7 7 C 1.41259 * 120.33862 * 0.26123 * 6 5 4 8 8 C 1.41019 * 119.97049 * 179.74022 * 7 6 5 9 9 H 1.08005 * 119.99603 * 28.28143 * 8 7 6 10 10 C 1.39887 * 120.00083 * 208.27658 * 8 7 6 11 11 N 1.30882 * 119.99686 * 11.96853 * 10 8 7 12 12 Si 1.86795 * 120.00147 * 191.96942 * 10 8 7 13 13 H 1.48503 * 109.47017 * 90.00220 * 12 10 8 14 14 H 1.48498 * 109.47258 * 210.00099 * 12 10 8 15 15 H 1.48503 * 109.47126 * 330.00280 * 12 10 8 16 16 C 1.40598 * 120.05490 * 359.46590 * 7 6 5 17 17 C 1.38206 * 119.57941 * 0.54212 * 16 7 6 18 18 N 1.36642 * 125.14710 * 179.97438 * 2 1 3 19 19 C 1.46498 * 125.59250 * 359.97438 * 18 2 1 20 20 C 1.53009 * 109.47174 * 119.36422 * 19 18 2 21 21 C 1.52994 * 109.47450 * 239.36358 * 19 18 2 22 22 H 1.09002 * 109.47154 * 264.52225 * 1 2 3 23 23 H 1.08995 * 109.47048 * 24.52300 * 1 2 3 24 24 H 1.08997 * 109.46486 * 144.52574 * 1 2 3 25 25 H 1.08004 * 126.04013 * 0.02562 * 3 2 1 26 26 H 1.07997 * 119.92162 * 0.02562 * 5 4 3 27 27 H 1.07998 * 119.82991 * 179.97438 * 6 5 4 28 28 H 0.97005 * 119.99455 * 179.97438 * 11 10 8 29 29 H 1.07997 * 120.20556 * 180.23319 * 16 7 6 30 30 H 1.09002 * 109.47406 * 359.36651 * 19 18 2 31 31 H 1.09002 * 109.46768 * 59.99838 * 20 19 18 32 32 H 1.08996 * 109.47087 * 180.02562 * 20 19 18 33 33 H 1.08994 * 109.46916 * 300.00226 * 20 19 18 34 34 H 1.09004 * 109.46979 * 64.41746 * 21 19 18 35 35 H 1.09003 * 109.47520 * 184.41302 * 21 19 18 36 36 H 1.08996 * 109.47325 * 304.41760 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2826 1.1016 0.0000 4 6 3.6351 0.6823 0.0006 5 6 4.8586 1.3736 0.0004 6 6 6.0294 0.6871 0.0017 7 6 6.0283 -0.7255 -0.0024 8 6 7.2494 -1.4309 -0.0065 9 1 8.1298 -0.9890 0.4363 10 6 7.3203 -2.7029 -0.5842 11 7 6.3326 -3.1426 -1.3218 12 14 8.8247 -3.7740 -0.3028 13 1 8.6190 -4.6078 0.9087 14 1 9.0327 -4.6545 -1.4803 15 1 10.0182 -2.9110 -0.1130 16 6 4.8109 -1.4287 0.0036 17 6 3.6189 -0.7292 0.0021 18 7 2.2937 -1.1173 0.0005 19 6 1.8105 -2.5003 0.0017 20 6 2.3095 -3.2160 -1.2553 21 6 2.3366 -3.2234 1.2430 22 1 -0.3633 -0.0981 1.0230 23 1 -0.3633 0.9349 -0.4265 24 1 -0.3632 -0.8369 -0.5964 25 1 1.9344 2.1239 0.0004 26 1 4.8673 2.4535 0.0001 27 1 6.9667 1.2236 0.0011 28 1 6.3820 -4.0246 -1.7227 29 1 4.8072 -2.5087 0.0043 30 1 0.7205 -2.5044 0.0134 31 1 3.3995 -3.2119 -1.2670 32 1 1.9496 -4.2448 -1.2546 33 1 1.9347 -2.7009 -2.1396 34 1 1.9180 -2.7615 2.1373 35 1 2.0426 -4.2723 1.2045 36 1 3.4238 -3.1515 1.2720 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260501554.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:46 Heat of formation + Delta-G solvation = 38.844159 kcal Electronic energy + Delta-G solvation = -17601.859358 eV Core-core repulsion = 15050.601288 eV Total energy + Delta-G solvation = -2551.258070 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.32530 -36.25213 -34.66408 -33.03883 -30.53186 -29.64882 -27.79028 -26.99293 -26.79246 -23.84714 -21.76042 -20.40219 -19.80288 -18.68720 -16.75601 -15.73260 -15.17117 -14.69040 -14.26587 -14.11496 -13.44515 -13.30260 -12.74594 -12.45397 -12.29867 -12.12028 -12.01369 -11.93496 -11.62984 -11.35596 -11.22065 -11.06113 -10.93072 -10.68815 -10.60264 -10.44238 -9.77167 -9.70276 -9.27297 -9.01054 -8.20438 -6.86509 -6.59556 -6.38198 -4.20478 2.53048 2.99915 3.10905 3.14363 3.31347 3.78313 3.88956 4.00049 4.78855 5.12494 5.41146 5.43609 5.54071 5.61564 5.79997 5.89135 5.93999 5.99306 6.07734 6.15514 6.23504 6.25935 6.43849 6.57774 6.65774 6.76956 6.87096 6.99267 7.14948 7.34086 7.36377 7.55471 7.90406 8.01122 8.10283 8.30018 8.41133 8.58585 8.78095 8.99259 9.07904 10.30928 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.025836 B = 0.008503 C = 0.006799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.504100 B = 3292.079198 C = 4117.085751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.010 3.990 3 C -0.186 4.186 4 C -0.196 4.196 5 C -0.074 4.074 6 C -0.196 4.196 7 C 0.118 3.882 8 C -0.458 4.458 9 H 0.076 0.924 10 C 0.074 3.926 11 N -0.800 5.800 12 Si 0.906 3.094 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.264 1.264 16 C -0.200 4.200 17 C 0.137 3.863 18 N -0.482 5.482 19 C 0.145 3.855 20 C -0.171 4.171 21 C -0.167 4.167 22 H 0.058 0.942 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.118 0.882 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.276 0.724 29 H 0.122 0.878 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.819 -0.949 1.641 8.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 C -0.212 4.212 4 C -0.199 4.199 5 C -0.093 4.093 6 C -0.216 4.216 7 C 0.114 3.886 8 C -0.489 4.489 9 H 0.094 0.906 10 C -0.142 4.142 11 N -0.427 5.427 12 Si 0.731 3.269 13 H -0.195 1.195 14 H -0.205 1.205 15 H -0.188 1.188 16 C -0.223 4.223 17 C 0.033 3.967 18 N -0.169 5.169 19 C 0.042 3.958 20 C -0.228 4.228 21 C -0.224 4.224 22 H 0.077 0.923 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.136 0.864 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.086 0.914 29 H 0.140 0.860 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.031 -1.454 1.487 8.296 hybrid contribution 0.643 -0.549 -0.044 0.847 sum -7.387 -2.003 1.444 7.789 Atomic orbital electron populations 1.20215 0.89912 1.02102 1.01236 1.19882 0.92182 0.86239 1.11162 1.20144 0.92246 0.95972 1.12836 1.17855 0.92702 0.92615 1.16775 1.19814 0.91398 0.96886 1.01238 1.20779 0.95829 0.94826 1.10144 1.17269 0.92593 0.90265 0.88441 1.19431 0.96189 0.99893 1.33398 0.90628 1.25816 0.97391 0.97947 0.93053 1.69853 1.31523 1.17943 1.23357 0.86347 0.82064 0.79920 0.78534 1.19537 1.20477 1.18770 1.20192 0.87909 0.99126 1.15114 1.18318 0.83658 0.93156 1.01531 1.43837 1.04522 1.03659 1.64872 1.20985 0.98008 0.80636 0.96156 1.22260 1.05158 0.98963 0.96468 1.22214 1.03888 0.99436 0.96898 0.92282 0.91090 0.92669 0.86378 0.89216 0.88737 0.91355 0.86006 0.90273 0.89099 0.92288 0.92846 0.92772 0.91925 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 9.75 36.01 0.35 -0.74 16 2 C 0.01 0.20 6.85 -81.69 -0.56 -0.36 16 3 C -0.19 -3.90 10.72 -39.55 -0.42 -4.33 16 4 C -0.20 -4.74 6.19 -106.65 -0.66 -5.40 16 5 C -0.07 -1.76 10.03 -39.62 -0.40 -2.16 16 6 C -0.20 -4.92 9.69 -39.34 -0.38 -5.30 16 7 C 0.12 3.18 5.55 -106.81 -0.59 2.59 16 8 C -0.46 -12.18 9.03 -37.91 -0.34 -12.52 16 9 H 0.08 1.93 7.87 -52.48 -0.41 1.52 16 10 C 0.07 1.85 5.22 -17.34 -0.09 1.76 16 11 N -0.80 -20.49 10.87 55.54 0.60 -19.89 16 12 Si 0.91 18.82 29.58 -169.99 -5.03 13.79 16 13 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 14 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 15 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 16 C -0.20 -5.23 7.09 -38.70 -0.27 -5.50 16 17 C 0.14 3.36 6.16 -83.95 -0.52 2.85 16 18 N -0.48 -10.04 2.66 -102.75 -0.27 -10.31 16 19 C 0.15 2.51 3.45 -67.93 -0.23 2.28 16 20 C -0.17 -2.98 9.25 37.16 0.34 -2.63 16 21 C -0.17 -2.76 9.28 37.15 0.34 -2.41 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.71 7.27 -51.93 -0.38 0.33 16 25 H 0.12 2.17 8.06 -52.48 -0.42 1.75 16 26 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 28 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 29 H 0.12 3.22 4.01 -52.49 -0.21 3.01 16 30 H 0.08 1.17 6.70 -51.93 -0.35 0.82 16 31 H 0.09 1.91 6.20 -51.93 -0.32 1.59 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.51 5.94 -51.93 -0.31 1.20 16 LS Contribution 291.99 15.07 4.40 4.40 Total: -1.00 -28.56 291.99 -8.65 -37.21 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -4.92 Total: 6.68 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: -3.43 Total: -31.88 kcal Atomic # 7 Polarization: -30.53 SS G_CDS: 0.33 Total: -30.20 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.56 -8.65 -37.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501554.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.054 kcal (2) G-P(sol) polarization free energy of solvation -28.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds