Wall clock time and date at job start Mon Mar 30 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34722 * 125.14763 * 2 1 4 4 C 1.41594 * 107.92513 * 179.97438 * 3 2 1 5 5 C 1.40527 * 133.31371 * 179.97438 * 4 3 2 6 6 C 1.35721 * 120.15240 * 179.97438 * 5 4 3 7 7 C 1.41259 * 120.33862 * 0.26123 * 6 5 4 8 8 C 1.41019 * 119.97049 * 179.74022 * 7 6 5 9 9 H 1.08005 * 119.99603 * 28.28143 * 8 7 6 10 10 C 1.39887 * 120.00083 * 208.27658 * 8 7 6 11 11 N 1.30882 * 119.99686 * 11.96853 * 10 8 7 12 12 Si 1.86795 * 120.00147 * 191.96942 * 10 8 7 13 13 H 1.48503 * 109.47017 * 90.00220 * 12 10 8 14 14 H 1.48498 * 109.47258 * 210.00099 * 12 10 8 15 15 H 1.48503 * 109.47126 * 330.00280 * 12 10 8 16 16 C 1.40598 * 120.05490 * 359.46590 * 7 6 5 17 17 C 1.38206 * 119.57941 * 0.54212 * 16 7 6 18 18 N 1.36642 * 125.14710 * 179.97438 * 2 1 3 19 19 C 1.46498 * 125.59250 * 359.97438 * 18 2 1 20 20 C 1.53009 * 109.47174 * 119.36422 * 19 18 2 21 21 C 1.52994 * 109.47450 * 239.36358 * 19 18 2 22 22 H 1.09002 * 109.47154 * 264.52225 * 1 2 3 23 23 H 1.08995 * 109.47048 * 24.52300 * 1 2 3 24 24 H 1.08997 * 109.46486 * 144.52574 * 1 2 3 25 25 H 1.08004 * 126.04013 * 0.02562 * 3 2 1 26 26 H 1.07997 * 119.92162 * 0.02562 * 5 4 3 27 27 H 1.07998 * 119.82991 * 179.97438 * 6 5 4 28 28 H 0.97005 * 119.99455 * 179.97438 * 11 10 8 29 29 H 1.07997 * 120.20556 * 180.23319 * 16 7 6 30 30 H 1.09002 * 109.47406 * 359.36651 * 19 18 2 31 31 H 1.09002 * 109.46768 * 59.99838 * 20 19 18 32 32 H 1.08996 * 109.47087 * 180.02562 * 20 19 18 33 33 H 1.08994 * 109.46916 * 300.00226 * 20 19 18 34 34 H 1.09004 * 109.46979 * 64.41746 * 21 19 18 35 35 H 1.09003 * 109.47520 * 184.41302 * 21 19 18 36 36 H 1.08996 * 109.47325 * 304.41760 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2826 1.1016 0.0000 4 6 3.6351 0.6823 0.0006 5 6 4.8586 1.3736 0.0004 6 6 6.0294 0.6871 0.0017 7 6 6.0283 -0.7255 -0.0024 8 6 7.2494 -1.4309 -0.0065 9 1 8.1298 -0.9890 0.4363 10 6 7.3203 -2.7029 -0.5842 11 7 6.3326 -3.1426 -1.3218 12 14 8.8247 -3.7740 -0.3028 13 1 8.6190 -4.6078 0.9087 14 1 9.0327 -4.6545 -1.4803 15 1 10.0182 -2.9110 -0.1130 16 6 4.8109 -1.4287 0.0036 17 6 3.6189 -0.7292 0.0021 18 7 2.2937 -1.1173 0.0005 19 6 1.8105 -2.5003 0.0017 20 6 2.3095 -3.2160 -1.2553 21 6 2.3366 -3.2234 1.2430 22 1 -0.3633 -0.0981 1.0230 23 1 -0.3633 0.9349 -0.4265 24 1 -0.3632 -0.8369 -0.5964 25 1 1.9344 2.1239 0.0004 26 1 4.8673 2.4535 0.0001 27 1 6.9667 1.2236 0.0011 28 1 6.3820 -4.0246 -1.7227 29 1 4.8072 -2.5087 0.0043 30 1 0.7205 -2.5044 0.0134 31 1 3.3995 -3.2119 -1.2670 32 1 1.9496 -4.2448 -1.2546 33 1 1.9347 -2.7009 -2.1396 34 1 1.9180 -2.7615 2.1373 35 1 2.0426 -4.2723 1.2045 36 1 3.4238 -3.1515 1.2720 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260501554.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:46 Heat of formation + Delta-G solvation = 25.006832 kcal Electronic energy + Delta-G solvation = -17602.459390 eV Core-core repulsion = 15050.601288 eV Total energy + Delta-G solvation = -2551.858101 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.99696 -38.04414 -36.22785 -34.82634 -32.03675 -31.43493 -29.51079 -28.67121 -28.16408 -25.61091 -23.37742 -22.18959 -21.46398 -20.35742 -18.58708 -17.44095 -16.86879 -16.40920 -15.76882 -15.61397 -15.23091 -14.85140 -14.18154 -13.97217 -13.82812 -13.61580 -13.55526 -13.43770 -13.12760 -12.95565 -12.74862 -12.68936 -12.49049 -12.29398 -12.14074 -12.05953 -11.57052 -11.47974 -11.08540 -10.85295 -9.98769 -8.70954 -8.44822 -8.16586 -6.16419 0.77251 1.23050 1.39135 1.50891 1.53180 2.17415 2.24643 2.25774 2.89764 3.76115 3.81475 4.06716 4.10040 4.20829 4.27860 4.56881 4.64468 4.66552 4.76297 4.82401 4.84330 4.87220 4.94215 5.06084 5.07938 5.15863 5.24032 5.27789 5.41302 5.48614 5.57952 5.71653 6.06056 6.13134 6.28710 6.46732 6.53331 6.85675 6.97315 7.05014 7.16658 8.45661 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.025836 B = 0.008503 C = 0.006799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.504100 B = 3292.079198 C = 4117.085751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.031 3.969 3 C -0.218 4.218 4 C -0.214 4.214 5 C -0.081 4.081 6 C -0.218 4.218 7 C 0.079 3.921 8 C -0.496 4.496 9 H 0.071 0.929 10 C 0.033 3.967 11 N -0.828 5.828 12 Si 0.979 3.021 13 H -0.264 1.264 14 H -0.270 1.270 15 H -0.261 1.261 16 C -0.206 4.206 17 C 0.111 3.889 18 N -0.484 5.484 19 C 0.137 3.863 20 C -0.164 4.164 21 C -0.161 4.161 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.073 0.927 25 H 0.144 0.856 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.282 0.718 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.366 -1.557 1.832 10.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.075 4.075 3 C -0.243 4.243 4 C -0.218 4.218 5 C -0.100 4.100 6 C -0.237 4.237 7 C 0.075 3.925 8 C -0.527 4.527 9 H 0.090 0.910 10 C -0.180 4.180 11 N -0.455 5.455 12 Si 0.800 3.200 13 H -0.189 1.189 14 H -0.194 1.194 15 H -0.185 1.185 16 C -0.230 4.230 17 C 0.006 3.994 18 N -0.169 5.169 19 C 0.036 3.964 20 C -0.222 4.222 21 C -0.218 4.218 22 H 0.099 0.901 23 H 0.111 0.889 24 H 0.092 0.908 25 H 0.161 0.839 26 H 0.134 0.866 27 H 0.119 0.881 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.138 0.862 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.595 -2.061 1.679 10.924 hybrid contribution 1.217 -0.318 -0.106 1.262 sum -9.378 -2.379 1.574 9.802 Atomic orbital electron populations 1.20408 0.85383 1.04209 1.03241 1.20827 0.94821 0.85090 1.06741 1.20466 0.90839 0.98019 1.14984 1.18413 0.94407 0.92924 1.16083 1.20121 0.91059 0.98287 1.00500 1.20938 0.96872 0.94516 1.11386 1.17669 0.93366 0.91450 0.89981 1.19629 0.96210 1.01552 1.35319 0.91046 1.26617 1.00526 0.98601 0.92225 1.69927 1.33272 1.18487 1.23832 0.85254 0.78102 0.77911 0.78693 1.18919 1.19423 1.18512 1.20145 0.88719 0.98652 1.15465 1.18432 0.84997 0.93634 1.02345 1.44215 1.03381 1.05648 1.63699 1.21357 1.00122 0.78813 0.96130 1.22186 1.02317 1.01158 0.96551 1.22161 1.01183 1.01570 0.96928 0.90050 0.88904 0.90791 0.83851 0.86566 0.88077 0.90793 0.87176 0.86191 0.93393 0.88868 0.93183 0.92116 0.88690 0.94483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.73 9.75 71.24 0.69 -1.03 16 2 C 0.03 1.13 6.85 41.01 0.28 1.41 16 3 C -0.22 -8.77 10.72 22.29 0.24 -8.53 16 4 C -0.21 -10.45 6.19 -21.18 -0.13 -10.59 16 5 C -0.08 -3.93 10.03 22.24 0.22 -3.71 16 6 C -0.22 -11.46 9.69 22.43 0.22 -11.24 16 7 C 0.08 4.50 5.55 -21.28 -0.12 4.38 16 8 C -0.50 -27.90 9.03 23.35 0.21 -27.69 16 9 H 0.07 3.88 7.87 -2.91 -0.02 3.86 16 10 C 0.03 1.74 5.22 85.23 0.44 2.19 16 11 N -0.83 -44.26 10.87 21.82 0.24 -44.02 16 12 Si 0.98 39.67 29.58 68.60 2.03 41.70 16 13 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 14 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 15 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 16 C -0.21 -11.37 7.09 22.84 0.16 -11.21 16 17 C 0.11 5.56 6.16 38.87 0.24 5.80 16 18 N -0.48 -19.48 2.66 -478.99 -1.27 -20.75 16 19 C 0.14 4.41 3.45 44.99 0.16 4.57 16 20 C -0.16 -5.52 9.25 71.99 0.67 -4.86 16 21 C -0.16 -5.07 9.28 71.98 0.67 -4.41 16 22 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.07 1.47 7.27 -2.39 -0.02 1.45 16 25 H 0.14 4.89 8.06 -2.91 -0.02 4.87 16 26 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 27 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 28 H 0.28 13.68 8.30 -92.70 -0.77 12.92 16 29 H 0.11 6.20 4.01 -2.91 -0.01 6.19 16 30 H 0.12 2.93 6.70 -2.39 -0.02 2.91 16 31 H 0.05 2.05 6.20 -2.39 -0.01 2.04 16 32 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.04 1.47 5.94 -2.39 -0.01 1.46 16 Total: -1.00 -66.04 291.99 6.01 -60.02 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 1.07 Total: 27.97 kcal Atomic # 6 Polarization: -68.87 SS G_CDS: 3.95 Total: -64.91 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: -1.04 Total: -64.78 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -66.04 6.01 -60.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501554.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.031 kcal (2) G-P(sol) polarization free energy of solvation -66.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds