Wall clock time and date at job start Mon Mar 30 2020 05:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48502 * 109.47278 * 239.99402 * 3 2 1 5 5 H 1.48497 * 109.47549 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47157 * 119.99862 * 3 2 1 7 7 C 1.39925 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00034 * 170.76953 * 7 2 1 9 9 C 1.41046 * 120.00116 * 350.76799 * 7 2 1 10 10 C 1.40572 * 120.19490 * 324.97344 * 9 7 2 11 11 C 1.36445 * 120.12711 * 179.55711 * 10 9 7 12 12 C 1.38932 * 120.35784 * 0.15266 * 11 10 9 13 13 C 1.37972 * 120.62483 * 0.10890 * 12 11 10 14 14 C 1.38803 * 120.53295 * 0.22420 * 13 12 11 15 15 N 1.39017 * 111.20213 * 179.39640 * 14 13 12 16 16 C 1.46900 * 111.00199 * 140.40214 * 15 14 13 17 17 C 1.52997 * 109.47031 * 190.52225 * 16 15 14 18 18 C 1.52993 * 117.50502 * 243.74672 * 17 16 15 19 19 C 1.52999 * 117.49737 * 175.08671 * 17 16 15 20 20 C 1.47918 * 107.99713 * 18.50705 * 15 14 13 21 21 C 1.51617 * 131.59878 * 180.65456 * 13 12 11 22 22 H 0.97001 * 120.00072 * 0.02562 * 1 2 3 23 23 H 1.08002 * 119.93988 * 359.82867 * 10 9 7 24 24 H 1.07998 * 119.82099 * 180.18039 * 11 10 9 25 25 H 1.08012 * 119.69082 * 180.08758 * 12 11 10 26 26 H 1.08996 * 109.47342 * 310.52699 * 16 15 14 27 27 H 1.09001 * 109.46759 * 70.52827 * 16 15 14 28 28 H 1.09004 * 115.54892 * 29.42599 * 17 16 15 29 29 H 1.09006 * 117.49608 * 0.02562 * 18 17 16 30 30 H 1.09001 * 117.50083 * 145.02269 * 18 17 16 31 31 H 1.09008 * 117.49821 * 214.98233 * 19 17 16 32 32 H 1.08994 * 117.50158 * 0.02562 * 19 17 16 33 33 H 1.09007 * 110.78794 * 90.99182 * 20 15 14 34 34 H 1.08994 * 110.79253 * 214.46160 * 20 15 14 35 35 H 1.08995 * 110.77051 * 282.13026 * 21 13 12 36 36 H 1.09001 * 110.76533 * 45.53460 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0966 1.6964 -1.2124 5 1 1.2778 2.7465 -0.0006 6 1 3.0965 1.6964 1.2126 7 6 2.0083 -1.2118 0.0005 8 1 3.0779 -1.2180 -0.1495 9 6 1.3168 -2.4253 0.1971 10 6 0.2110 -2.4766 1.0634 11 6 -0.4625 -3.6492 1.2456 12 6 -0.0602 -4.8006 0.5803 13 6 1.0252 -4.7775 -0.2711 14 6 1.7372 -3.6035 -0.4743 15 7 2.7949 -3.8028 -1.3541 16 6 2.9435 -2.6608 -2.2661 17 6 3.9319 -3.0206 -3.3771 18 6 5.2328 -2.2191 -3.4524 19 6 4.1368 -1.9998 -4.4982 20 6 2.5359 -5.0506 -2.1050 21 6 1.6627 -5.8609 -1.1189 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1088 -1.5852 1.5826 24 1 -1.3132 -3.6823 1.9101 25 1 -0.6021 -5.7227 0.7313 26 1 1.9758 -2.4181 -2.7051 27 1 3.3174 -1.7997 -1.7121 28 1 3.9752 -4.0766 -3.6440 29 1 5.3848 -1.4355 -2.7100 30 1 6.1320 -2.7475 -3.7690 31 1 4.3155 -2.3842 -5.5025 32 1 3.5679 -1.0717 -4.4440 33 1 1.9892 -4.8423 -3.0247 34 1 3.4676 -5.5748 -2.3176 35 1 2.2799 -6.5180 -0.5063 36 1 0.9027 -6.4304 -1.6538 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260507830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:31 Heat of formation + Delta-G solvation = 56.517292 kcal Electronic energy + Delta-G solvation = -17575.985503 eV Core-core repulsion = 15025.493798 eV Total energy + Delta-G solvation = -2550.491705 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.58711 -37.00782 -35.28899 -33.61758 -31.27234 -28.93580 -27.67703 -26.07344 -24.19737 -22.14774 -22.04604 -20.57770 -19.76951 -19.02387 -16.94232 -15.78954 -15.47620 -14.99887 -14.46978 -14.22584 -13.92564 -13.46022 -12.84548 -12.64946 -12.33556 -11.86566 -11.56307 -11.41530 -11.24379 -11.15256 -11.05982 -10.94336 -10.65989 -10.55422 -10.24501 -9.97620 -9.77805 -9.65688 -9.28742 -9.11739 -8.59949 -7.23098 -6.73141 -6.46059 -4.26976 2.79736 2.91715 3.08939 3.11989 3.20266 3.98232 4.12458 4.66021 4.79984 5.08317 5.29902 5.35983 5.46642 5.48938 5.65549 5.85637 5.88379 5.90068 6.12004 6.18664 6.25505 6.30109 6.41235 6.44406 6.51126 6.56565 6.62200 6.89763 6.91203 7.20247 7.23984 7.41194 7.59638 7.74123 8.07604 8.14676 8.23081 8.37940 8.68492 8.92131 9.00471 10.31903 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.012857 C = 0.007188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.571628 B = 2177.338721 C = 3894.411348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.075 3.925 3 Si 0.903 3.097 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.467 4.467 8 H 0.080 0.920 9 C 0.113 3.887 10 C -0.133 4.133 11 C -0.125 4.125 12 C -0.192 4.192 13 C -0.125 4.125 14 C -0.009 4.009 15 N -0.459 5.459 16 C 0.078 3.922 17 C -0.150 4.150 18 C -0.177 4.177 19 C -0.186 4.186 20 C 0.047 3.953 21 C -0.079 4.079 22 H 0.278 0.722 23 H 0.115 0.885 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.040 0.960 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.355 -3.462 -4.988 7.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.498 4.498 8 H 0.098 0.902 9 C 0.109 3.891 10 C -0.154 4.154 11 C -0.144 4.144 12 C -0.212 4.212 13 C -0.128 4.128 14 C -0.106 4.106 15 N -0.175 5.175 16 C -0.048 4.048 17 C -0.168 4.168 18 C -0.214 4.214 19 C -0.223 4.223 20 C -0.080 4.080 21 C -0.116 4.116 22 H 0.089 0.911 23 H 0.133 0.867 24 H 0.109 0.891 25 H 0.105 0.895 26 H 0.058 0.942 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.678 -3.324 -4.774 7.465 hybrid contribution -0.376 0.881 -0.474 1.068 sum 4.302 -2.443 -5.248 7.213 Atomic orbital electron populations 1.69787 1.07220 1.28885 1.37852 1.25785 0.94767 1.00706 0.92770 0.86451 0.80066 0.80814 0.79880 1.19132 1.20487 1.18952 1.19350 0.95354 0.90169 1.44943 0.90210 1.17041 0.92091 0.90023 0.89896 1.20772 0.98558 0.96421 0.99614 1.20341 0.99663 0.93630 1.00732 1.19655 0.99869 0.97273 1.04424 1.20026 0.97037 0.94374 1.01342 1.19560 0.94130 0.95677 1.01224 1.60449 1.39776 1.02340 1.14905 1.22043 0.96633 0.94974 0.91170 1.22554 0.98702 0.96881 0.98684 1.22971 0.92669 1.03531 1.02263 1.22938 1.03636 1.01500 0.94241 1.23123 0.98182 0.91045 0.95641 1.21166 0.97542 0.96594 0.96311 0.91120 0.86673 0.89118 0.89502 0.94205 0.88051 0.88057 0.88728 0.89487 0.89380 0.88843 0.93625 0.90622 0.91156 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.01 11.20 55.55 0.62 -20.39 16 2 C 0.08 1.88 5.24 -17.33 -0.09 1.78 16 3 Si 0.90 18.85 29.57 -169.99 -5.03 13.82 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.47 -12.14 7.05 -37.89 -0.27 -12.41 16 8 H 0.08 2.04 6.20 -52.48 -0.33 1.72 16 9 C 0.11 3.00 5.45 -106.52 -0.58 2.42 16 10 C -0.13 -3.47 8.54 -39.35 -0.34 -3.80 16 11 C -0.12 -2.94 9.98 -39.97 -0.40 -3.34 16 12 C -0.19 -4.37 10.03 -39.42 -0.40 -4.77 16 13 C -0.12 -2.86 6.23 -104.06 -0.65 -3.51 16 14 C -0.01 -0.21 5.86 -82.97 -0.49 -0.70 16 15 N -0.46 -9.90 5.15 -168.53 -0.87 -10.77 16 16 C 0.08 1.59 4.39 -3.83 -0.02 1.58 16 17 C -0.15 -2.44 5.47 -90.63 -0.50 -2.94 16 18 C -0.18 -2.59 10.18 -26.70 -0.27 -2.86 16 19 C -0.19 -2.66 10.25 -26.70 -0.27 -2.93 16 20 C 0.05 0.85 5.31 -2.41 -0.01 0.83 16 21 C -0.08 -1.45 7.05 -26.57 -0.19 -1.64 16 22 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 23 H 0.12 3.07 6.65 -52.49 -0.35 2.72 16 24 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 25 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 26 H 0.04 0.90 8.05 -51.93 -0.42 0.48 16 27 H 0.10 2.25 4.88 -51.93 -0.25 1.99 16 28 H 0.10 1.55 6.28 -51.93 -0.33 1.22 16 29 H 0.09 1.44 8.03 -51.93 -0.42 1.02 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.09 1.08 8.14 -51.92 -0.42 0.66 16 32 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.05 0.80 7.67 -51.93 -0.40 0.40 16 34 H 0.08 1.18 7.68 -51.93 -0.40 0.78 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 288.85 15.07 4.35 4.35 Total: -1.00 -27.26 288.85 -10.36 -37.62 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -4.98 Total: 7.64 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: -4.46 Total: -32.28 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: -0.25 Total: -31.16 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.26 -10.36 -37.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260507830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.140 kcal (2) G-P(sol) polarization free energy of solvation -27.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds