Wall clock time and date at job start Mon Mar 30 2020 05:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48502 * 109.47278 * 239.99402 * 3 2 1 5 5 H 1.48497 * 109.47549 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47157 * 119.99862 * 3 2 1 7 7 C 1.39925 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00034 * 170.76953 * 7 2 1 9 9 C 1.41046 * 120.00116 * 350.76799 * 7 2 1 10 10 C 1.40572 * 120.19490 * 324.97344 * 9 7 2 11 11 C 1.36445 * 120.12711 * 179.55711 * 10 9 7 12 12 C 1.38932 * 120.35784 * 0.15266 * 11 10 9 13 13 C 1.37972 * 120.62483 * 0.10890 * 12 11 10 14 14 C 1.38803 * 120.53295 * 0.22420 * 13 12 11 15 15 N 1.39017 * 111.20213 * 179.39640 * 14 13 12 16 16 C 1.46900 * 111.00199 * 140.40214 * 15 14 13 17 17 C 1.52997 * 109.47031 * 190.52225 * 16 15 14 18 18 C 1.52993 * 117.50502 * 243.74672 * 17 16 15 19 19 C 1.52999 * 117.49737 * 175.08671 * 17 16 15 20 20 C 1.47918 * 107.99713 * 18.50705 * 15 14 13 21 21 C 1.51617 * 131.59878 * 180.65456 * 13 12 11 22 22 H 0.97001 * 120.00072 * 0.02562 * 1 2 3 23 23 H 1.08002 * 119.93988 * 359.82867 * 10 9 7 24 24 H 1.07998 * 119.82099 * 180.18039 * 11 10 9 25 25 H 1.08012 * 119.69082 * 180.08758 * 12 11 10 26 26 H 1.08996 * 109.47342 * 310.52699 * 16 15 14 27 27 H 1.09001 * 109.46759 * 70.52827 * 16 15 14 28 28 H 1.09004 * 115.54892 * 29.42599 * 17 16 15 29 29 H 1.09006 * 117.49608 * 0.02562 * 18 17 16 30 30 H 1.09001 * 117.50083 * 145.02269 * 18 17 16 31 31 H 1.09008 * 117.49821 * 214.98233 * 19 17 16 32 32 H 1.08994 * 117.50158 * 0.02562 * 19 17 16 33 33 H 1.09007 * 110.78794 * 90.99182 * 20 15 14 34 34 H 1.08994 * 110.79253 * 214.46160 * 20 15 14 35 35 H 1.08995 * 110.77051 * 282.13026 * 21 13 12 36 36 H 1.09001 * 110.76533 * 45.53460 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0966 1.6964 -1.2124 5 1 1.2778 2.7465 -0.0006 6 1 3.0965 1.6964 1.2126 7 6 2.0083 -1.2118 0.0005 8 1 3.0779 -1.2180 -0.1495 9 6 1.3168 -2.4253 0.1971 10 6 0.2110 -2.4766 1.0634 11 6 -0.4625 -3.6492 1.2456 12 6 -0.0602 -4.8006 0.5803 13 6 1.0252 -4.7775 -0.2711 14 6 1.7372 -3.6035 -0.4743 15 7 2.7949 -3.8028 -1.3541 16 6 2.9435 -2.6608 -2.2661 17 6 3.9319 -3.0206 -3.3771 18 6 5.2328 -2.2191 -3.4524 19 6 4.1368 -1.9998 -4.4982 20 6 2.5359 -5.0506 -2.1050 21 6 1.6627 -5.8609 -1.1189 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1088 -1.5852 1.5826 24 1 -1.3132 -3.6823 1.9101 25 1 -0.6021 -5.7227 0.7313 26 1 1.9758 -2.4181 -2.7051 27 1 3.3174 -1.7997 -1.7121 28 1 3.9752 -4.0766 -3.6440 29 1 5.3848 -1.4355 -2.7100 30 1 6.1320 -2.7475 -3.7690 31 1 4.3155 -2.3842 -5.5025 32 1 3.5679 -1.0717 -4.4440 33 1 1.9892 -4.8423 -3.0247 34 1 3.4676 -5.5748 -2.3176 35 1 2.2799 -6.5180 -0.5063 36 1 0.9027 -6.4304 -1.6538 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260507830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:30 Heat of formation + Delta-G solvation = 42.619202 kcal Electronic energy + Delta-G solvation = -17576.588170 eV Core-core repulsion = 15025.493798 eV Total energy + Delta-G solvation = -2551.094372 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.26237 -38.41475 -36.95824 -35.44085 -32.97823 -30.72225 -29.37448 -27.83058 -25.91209 -23.69161 -23.21363 -22.27913 -21.55554 -20.51067 -18.81342 -17.39628 -17.04758 -16.71734 -16.13604 -15.66325 -15.60610 -14.89282 -14.49612 -14.36184 -14.04338 -13.59458 -13.26081 -13.07240 -12.81083 -12.75398 -12.52217 -12.38431 -12.25826 -12.09743 -11.88570 -11.51436 -11.32347 -11.14587 -11.02987 -10.87883 -10.29759 -9.11599 -8.60639 -8.25644 -6.22867 0.97048 1.05743 1.35282 1.45188 1.48209 2.21502 2.78410 2.87315 3.24592 3.71040 3.76238 3.97373 4.06712 4.07408 4.16811 4.41999 4.51737 4.62969 4.66552 4.78131 4.79969 4.85107 4.88780 4.95304 5.03853 5.10130 5.17230 5.26836 5.28995 5.34382 5.46880 5.63176 5.79421 5.90761 6.16886 6.34285 6.38644 6.54891 6.79013 6.99529 7.11060 8.45222 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.012857 C = 0.007188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.571628 B = 2177.338721 C = 3894.411348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.035 3.965 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.262 1.262 7 C -0.488 4.488 8 H 0.072 0.928 9 C 0.076 3.924 10 C -0.160 4.160 11 C -0.133 4.133 12 C -0.192 4.192 13 C -0.140 4.140 14 C -0.025 4.025 15 N -0.469 5.469 16 C 0.090 3.910 17 C -0.164 4.164 18 C -0.170 4.170 19 C -0.174 4.174 20 C 0.048 3.952 21 C -0.072 4.072 22 H 0.282 0.718 23 H 0.095 0.905 24 H 0.113 0.887 25 H 0.119 0.881 26 H 0.005 0.995 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.613 -4.993 -6.435 9.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.519 4.519 8 H 0.090 0.910 9 C 0.072 3.928 10 C -0.180 4.180 11 C -0.152 4.152 12 C -0.211 4.211 13 C -0.143 4.143 14 C -0.122 4.122 15 N -0.185 5.185 16 C -0.036 4.036 17 C -0.182 4.182 18 C -0.206 4.206 19 C -0.212 4.212 20 C -0.078 4.078 21 C -0.109 4.109 22 H 0.092 0.908 23 H 0.113 0.887 24 H 0.131 0.869 25 H 0.137 0.863 26 H 0.023 0.977 27 H 0.092 0.908 28 H 0.138 0.862 29 H 0.099 0.901 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.940 -4.872 -6.227 9.889 hybrid contribution -0.789 1.241 -0.012 1.471 sum 5.150 -3.632 -6.239 8.868 Atomic orbital electron populations 1.69866 1.08567 1.29830 1.38987 1.26541 0.95473 1.03697 0.91994 0.85453 0.78859 0.76726 0.79956 1.18454 1.19529 1.18695 1.19437 0.95050 0.91119 1.46258 0.91011 1.17410 0.93050 0.91354 0.90960 1.20742 0.99751 0.96802 1.00694 1.20627 1.00095 0.93306 1.01190 1.20057 0.99780 0.97960 1.03340 1.20658 0.96693 0.95538 1.01415 1.19901 0.94974 0.95737 1.01620 1.60404 1.38706 1.03908 1.15486 1.21783 0.95979 0.94141 0.91727 1.22435 0.98987 0.98351 0.98432 1.23046 0.93066 1.02700 1.01832 1.23025 1.02712 1.00222 0.95211 1.23295 0.99896 0.89331 0.95267 1.21263 0.98122 0.95649 0.95907 0.90765 0.88669 0.86912 0.86325 0.97670 0.90775 0.86227 0.90098 0.86683 0.86405 0.90136 0.93191 0.87351 0.89316 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.85 11.20 21.83 0.24 -45.61 16 2 C 0.03 1.81 5.24 85.24 0.45 2.26 16 3 Si 0.97 39.90 29.57 68.60 2.03 41.93 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.49 -26.68 7.05 23.37 0.16 -26.52 16 8 H 0.07 3.90 6.20 -2.91 -0.02 3.88 16 9 C 0.08 4.20 5.45 -21.10 -0.12 4.09 16 10 C -0.16 -8.67 8.54 22.42 0.19 -8.48 16 11 C -0.13 -6.35 9.98 22.02 0.22 -6.13 16 12 C -0.19 -8.48 10.03 22.37 0.22 -8.26 16 13 C -0.14 -6.25 6.23 -19.50 -0.12 -6.37 16 14 C -0.02 -1.22 5.86 39.06 0.23 -0.99 16 15 N -0.47 -20.08 5.15 -687.11 -3.54 -23.61 16 16 C 0.09 3.75 4.39 86.30 0.38 4.13 16 17 C -0.16 -5.07 5.47 -10.80 -0.06 -5.13 16 18 C -0.17 -4.57 10.18 30.61 0.31 -4.26 16 19 C -0.17 -4.62 10.25 30.62 0.31 -4.31 16 20 C 0.05 1.60 5.31 86.66 0.46 2.06 16 21 C -0.07 -2.43 7.05 30.70 0.22 -2.22 16 22 H 0.28 14.09 8.30 -92.71 -0.77 13.32 16 23 H 0.10 5.41 6.65 -2.91 -0.02 5.39 16 24 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 25 H 0.12 4.42 8.06 -2.90 -0.02 4.40 16 26 H 0.00 0.24 8.05 -2.39 -0.02 0.22 16 27 H 0.07 3.45 4.88 -2.39 -0.01 3.44 16 28 H 0.12 3.26 6.28 -2.39 -0.01 3.25 16 29 H 0.08 2.40 8.03 -2.38 -0.02 2.38 16 30 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 32 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.05 1.62 7.67 -2.38 -0.02 1.61 16 34 H 0.11 2.91 7.68 -2.39 -0.02 2.89 16 35 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -61.74 288.85 2.67 -59.07 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 1.07 Total: 28.35 kcal Atomic # 6 Polarization: -62.98 SS G_CDS: 2.86 Total: -60.12 kcal Atomic # 7 Polarization: -65.93 SS G_CDS: -3.29 Total: -69.22 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -61.74 2.67 -59.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260507830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.691 kcal (2) G-P(sol) polarization free energy of solvation -61.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds