Wall clock time and date at job start Mon Mar 30 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34730 * 126.04144 * 2 1 4 4 N 1.36648 * 109.70015 * 179.97438 * 3 2 1 5 5 C 1.46503 * 125.58476 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47242 * 60.02154 * 5 4 3 7 7 C 1.53005 * 109.47148 * 300.02191 * 5 4 3 8 8 C 1.38084 * 108.82573 * 0.22944 * 4 3 2 9 9 C 1.38213 * 133.26420 * 179.74661 * 8 4 3 10 10 C 1.40592 * 119.57338 * 180.02562 * 9 8 4 11 11 C 1.41027 * 119.96624 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00017 * 24.94373 * 11 10 9 13 13 C 1.39886 * 119.99915 * 204.93955 * 11 10 9 14 14 N 1.30879 * 120.00455 * 18.06406 * 13 11 10 15 15 Si 1.86800 * 120.00083 * 198.06531 * 13 11 10 16 16 H 1.48508 * 109.46914 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.47492 * 119.99627 * 15 13 11 18 18 H 1.48497 * 109.47118 * 240.00280 * 15 13 11 19 19 C 1.41254 * 120.06629 * 0.02562 * 10 9 8 20 20 C 1.35737 * 120.33163 * 359.61477 * 19 10 9 21 21 C 1.40517 * 120.15081 * 0.61018 * 20 19 10 22 22 H 1.09005 * 109.46558 * 90.02385 * 1 2 3 23 23 H 1.08995 * 109.47518 * 210.02534 * 1 2 3 24 24 H 1.09001 * 109.46440 * 330.02781 * 1 2 3 25 25 H 1.07994 * 125.14539 * 359.97438 * 3 2 1 26 26 H 1.09005 * 109.47077 * 180.02562 * 5 4 3 27 27 H 1.09007 * 109.47058 * 60.00528 * 6 5 4 28 28 H 1.08995 * 109.47331 * 300.00071 * 6 5 4 29 29 H 1.09002 * 109.47510 * 179.97438 * 6 5 4 30 30 H 1.09005 * 109.46902 * 60.00174 * 7 5 4 31 31 H 1.08994 * 109.46892 * 180.02562 * 7 5 4 32 32 H 1.08999 * 109.46903 * 300.00537 * 7 5 4 33 33 H 1.07992 * 120.21071 * 0.05079 * 9 8 4 34 34 H 0.96994 * 120.00540 * 179.97438 * 14 13 11 35 35 H 1.07996 * 119.83734 * 179.97438 * 19 10 9 36 36 H 1.08000 * 119.92122 * 179.90509 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0894 0.0000 4 7 3.6110 0.7049 0.0006 5 6 4.7643 1.6084 0.0002 6 6 4.7210 2.4912 1.2491 7 6 4.7210 2.4902 -1.2494 8 6 3.6709 -0.6746 -0.0043 9 6 4.7174 -1.5773 -0.0104 10 6 4.4442 -2.9564 -0.0148 11 6 5.5058 -3.8848 -0.0205 12 1 6.4714 -3.6034 0.3728 13 6 5.3079 -5.1703 -0.5356 14 7 4.2877 -5.4115 -1.3191 15 14 6.4999 -6.5426 -0.1052 16 1 7.5599 -6.0146 0.7910 17 1 5.7685 -7.6354 0.5846 18 1 7.1188 -7.0687 -1.3483 19 6 3.1075 -3.4130 -0.0135 20 6 2.0801 -2.5260 -0.0002 21 6 2.3399 -1.1451 -0.0004 22 1 -0.3632 -0.0004 -1.0277 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3632 0.8903 0.5134 25 1 1.9515 2.1117 -0.0004 26 1 5.6841 1.0234 0.0004 27 1 4.7520 1.8629 2.1393 28 1 3.8013 3.0761 1.2489 29 1 5.5793 3.1631 1.2491 30 1 3.8012 3.0752 -1.2496 31 1 5.5793 3.1620 -1.2499 32 1 4.7518 1.8613 -2.1391 33 1 5.7385 -1.2255 -0.0114 34 1 4.1507 -6.3028 -1.6765 35 1 2.9019 -4.4732 -0.0174 36 1 1.0607 -2.8824 -0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260512933.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:11 Heat of formation + Delta-G solvation = 36.560202 kcal Electronic energy + Delta-G solvation = -17122.962969 eV Core-core repulsion = 14571.605859 eV Total energy + Delta-G solvation = -2551.357110 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.27594 -36.37433 -34.79241 -32.86571 -31.28046 -29.17680 -27.86682 -27.11502 -25.99616 -24.67514 -21.44291 -20.84961 -19.97769 -18.16026 -16.96523 -15.80221 -15.22553 -15.04302 -14.19950 -13.98004 -13.69109 -13.23488 -12.85019 -12.49695 -12.44756 -12.23486 -12.13907 -11.88043 -11.77811 -11.49429 -11.24565 -11.12347 -11.01168 -10.70675 -10.65037 -10.29248 -9.99208 -9.81059 -9.26469 -9.01549 -8.17891 -6.86429 -6.81477 -6.35559 -4.25318 2.52192 2.99618 3.08451 3.13956 3.35027 3.72732 3.82224 3.94644 4.71306 4.93361 5.22782 5.34077 5.59375 5.61994 5.77825 5.80325 5.83412 5.95574 5.98861 6.07243 6.17042 6.29373 6.32475 6.33327 6.49300 6.72445 6.93898 7.04574 7.13578 7.19237 7.35512 7.51406 7.85223 8.08884 8.15253 8.21632 8.38761 8.56776 8.66632 8.93864 9.04944 10.18807 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026631 B = 0.006790 C = 0.005699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.171935 B = 4122.871947 C = 4912.209807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.156 4.156 3 C -0.019 4.019 4 N -0.485 5.485 5 C 0.139 3.861 6 C -0.158 4.158 7 C -0.159 4.159 8 C 0.142 3.858 9 C -0.276 4.276 10 C 0.136 3.864 11 C -0.458 4.458 12 H 0.078 0.922 13 C 0.076 3.924 14 N -0.791 5.791 15 Si 0.907 3.093 16 H -0.260 1.260 17 H -0.271 1.271 18 H -0.275 1.275 19 C -0.149 4.149 20 C -0.079 4.079 21 C -0.193 4.193 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.139 0.861 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.280 0.720 35 H 0.119 0.881 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.032 9.069 1.721 9.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.163 4.163 3 C -0.142 4.142 4 N -0.171 5.171 5 C 0.036 3.964 6 C -0.216 4.216 7 C -0.217 4.217 8 C 0.038 3.962 9 C -0.299 4.299 10 C 0.132 3.868 11 C -0.487 4.487 12 H 0.096 0.904 13 C -0.142 4.142 14 N -0.417 5.417 15 Si 0.732 3.268 16 H -0.184 1.184 17 H -0.197 1.197 18 H -0.200 1.200 19 C -0.168 4.168 20 C -0.098 4.098 21 C -0.196 4.196 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.157 0.843 26 H 0.109 0.891 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.898 9.120 1.576 9.299 hybrid contribution 0.572 -0.584 0.023 0.818 sum -0.325 8.537 1.600 8.691 Atomic orbital electron populations 1.20005 0.91664 1.00710 1.00356 1.19058 0.94011 0.92312 1.10968 1.20875 0.82664 0.97399 1.13299 1.43789 1.04333 1.04134 1.64894 1.21028 0.89243 0.91007 0.95128 1.22146 1.01962 0.99622 0.97893 1.22157 1.01944 0.99652 0.97960 1.18185 0.95619 0.81111 1.01299 1.19643 0.94206 0.91763 1.24335 1.17279 0.92610 0.90226 0.86680 1.19508 0.98202 0.95583 1.35450 0.90405 1.25921 0.95804 0.99828 0.92611 1.69872 1.27039 1.22907 1.21854 0.86280 0.80876 0.80404 0.79278 1.18399 1.19656 1.20009 1.21000 0.92253 0.99023 1.04490 1.19940 0.97323 0.91138 1.01391 1.17705 0.91675 0.92725 1.17535 0.93091 0.92647 0.93393 0.84339 0.89095 0.92027 0.92334 0.91710 0.92343 0.91710 0.91973 0.89605 0.90885 0.86308 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.37 36.01 0.37 -0.78 16 2 C -0.16 -3.21 6.14 -104.58 -0.64 -3.85 16 3 C -0.02 -0.37 10.16 -16.65 -0.17 -0.54 16 4 N -0.49 -9.71 2.67 -107.27 -0.29 -10.00 16 5 C 0.14 2.20 3.56 -67.93 -0.24 1.96 16 6 C -0.16 -2.06 9.24 37.15 0.34 -1.72 16 7 C -0.16 -2.11 9.24 37.16 0.34 -1.77 16 8 C 0.14 3.45 6.81 -83.95 -0.57 2.87 16 9 C -0.28 -7.11 9.56 -38.70 -0.37 -7.48 16 10 C 0.14 3.71 5.57 -106.81 -0.59 3.11 16 11 C -0.46 -12.26 9.01 -37.91 -0.34 -12.60 16 12 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 13 C 0.08 1.92 5.12 -17.34 -0.09 1.83 16 14 N -0.79 -20.52 10.97 55.54 0.61 -19.91 16 15 Si 0.91 18.64 29.60 -169.99 -5.03 13.61 16 16 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 17 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 19 C -0.15 -3.95 8.59 -39.33 -0.34 -4.29 16 20 C -0.08 -1.95 10.03 -39.62 -0.40 -2.35 16 21 C -0.19 -4.67 6.13 -106.65 -0.65 -5.33 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.14 2.16 8.06 -52.49 -0.42 1.73 16 26 H 0.09 1.51 7.39 -51.93 -0.38 1.12 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.72 7.92 -51.93 -0.41 0.31 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.73 7.92 -51.93 -0.41 0.32 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 2.11 7.59 -52.49 -0.40 1.71 16 34 H 0.28 6.56 8.30 -40.82 -0.34 6.23 16 35 H 0.12 3.20 6.16 -52.49 -0.32 2.88 16 36 H 0.09 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 300.36 15.07 4.53 4.53 Total: -1.00 -28.97 300.36 -8.81 -37.78 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.28 Total: 4.93 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: -3.35 Total: -30.94 kcal Atomic # 7 Polarization: -30.23 SS G_CDS: 0.32 Total: -29.91 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.97 -8.81 -37.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260512933.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.343 kcal (2) G-P(sol) polarization free energy of solvation -28.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds