Wall clock time and date at job start Mon Mar 30 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34730 * 126.04144 * 2 1 4 4 N 1.36648 * 109.70015 * 179.97438 * 3 2 1 5 5 C 1.46503 * 125.58476 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47242 * 60.02154 * 5 4 3 7 7 C 1.53005 * 109.47148 * 300.02191 * 5 4 3 8 8 C 1.38084 * 108.82573 * 0.22944 * 4 3 2 9 9 C 1.38213 * 133.26420 * 179.74661 * 8 4 3 10 10 C 1.40592 * 119.57338 * 180.02562 * 9 8 4 11 11 C 1.41027 * 119.96624 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00017 * 24.94373 * 11 10 9 13 13 C 1.39886 * 119.99915 * 204.93955 * 11 10 9 14 14 N 1.30879 * 120.00455 * 18.06406 * 13 11 10 15 15 Si 1.86800 * 120.00083 * 198.06531 * 13 11 10 16 16 H 1.48508 * 109.46914 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.47492 * 119.99627 * 15 13 11 18 18 H 1.48497 * 109.47118 * 240.00280 * 15 13 11 19 19 C 1.41254 * 120.06629 * 0.02562 * 10 9 8 20 20 C 1.35737 * 120.33163 * 359.61477 * 19 10 9 21 21 C 1.40517 * 120.15081 * 0.61018 * 20 19 10 22 22 H 1.09005 * 109.46558 * 90.02385 * 1 2 3 23 23 H 1.08995 * 109.47518 * 210.02534 * 1 2 3 24 24 H 1.09001 * 109.46440 * 330.02781 * 1 2 3 25 25 H 1.07994 * 125.14539 * 359.97438 * 3 2 1 26 26 H 1.09005 * 109.47077 * 180.02562 * 5 4 3 27 27 H 1.09007 * 109.47058 * 60.00528 * 6 5 4 28 28 H 1.08995 * 109.47331 * 300.00071 * 6 5 4 29 29 H 1.09002 * 109.47510 * 179.97438 * 6 5 4 30 30 H 1.09005 * 109.46902 * 60.00174 * 7 5 4 31 31 H 1.08994 * 109.46892 * 180.02562 * 7 5 4 32 32 H 1.08999 * 109.46903 * 300.00537 * 7 5 4 33 33 H 1.07992 * 120.21071 * 0.05079 * 9 8 4 34 34 H 0.96994 * 120.00540 * 179.97438 * 14 13 11 35 35 H 1.07996 * 119.83734 * 179.97438 * 19 10 9 36 36 H 1.08000 * 119.92122 * 179.90509 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0894 0.0000 4 7 3.6110 0.7049 0.0006 5 6 4.7643 1.6084 0.0002 6 6 4.7210 2.4912 1.2491 7 6 4.7210 2.4902 -1.2494 8 6 3.6709 -0.6746 -0.0043 9 6 4.7174 -1.5773 -0.0104 10 6 4.4442 -2.9564 -0.0148 11 6 5.5058 -3.8848 -0.0205 12 1 6.4714 -3.6034 0.3728 13 6 5.3079 -5.1703 -0.5356 14 7 4.2877 -5.4115 -1.3191 15 14 6.4999 -6.5426 -0.1052 16 1 7.5599 -6.0146 0.7910 17 1 5.7685 -7.6354 0.5846 18 1 7.1188 -7.0687 -1.3483 19 6 3.1075 -3.4130 -0.0135 20 6 2.0801 -2.5260 -0.0002 21 6 2.3399 -1.1451 -0.0004 22 1 -0.3632 -0.0004 -1.0277 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3632 0.8903 0.5134 25 1 1.9515 2.1117 -0.0004 26 1 5.6841 1.0234 0.0004 27 1 4.7520 1.8629 2.1393 28 1 3.8013 3.0761 1.2489 29 1 5.5793 3.1631 1.2491 30 1 3.8012 3.0752 -1.2496 31 1 5.5793 3.1620 -1.2499 32 1 4.7518 1.8613 -2.1391 33 1 5.7385 -1.2255 -0.0114 34 1 4.1507 -6.3028 -1.6765 35 1 2.9019 -4.4732 -0.0174 36 1 1.0607 -2.8824 -0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260512933.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:11 Heat of formation + Delta-G solvation = 22.738072 kcal Electronic energy + Delta-G solvation = -17123.562341 eV Core-core repulsion = 14571.605859 eV Total energy + Delta-G solvation = -2551.956482 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.94634 -38.14999 -36.28623 -34.70567 -32.79702 -31.01596 -29.67924 -28.15629 -27.52955 -26.45731 -23.12700 -22.57729 -21.60687 -19.93311 -18.69856 -17.31158 -17.06611 -16.79405 -15.66594 -15.46563 -15.28483 -14.84582 -14.24228 -14.12753 -14.03413 -13.70552 -13.44439 -13.27061 -13.11104 -12.95130 -12.81707 -12.68688 -12.52388 -12.30792 -11.99319 -11.87027 -11.82121 -11.55856 -11.14547 -10.90511 -9.98769 -8.74160 -8.68915 -8.11622 -6.24293 0.71068 1.25460 1.38351 1.51833 1.54380 2.12172 2.19825 2.26079 2.81069 3.74433 3.77366 4.09601 4.13224 4.23775 4.32637 4.58138 4.61521 4.68052 4.71176 4.82465 4.85877 4.98662 4.99437 5.05324 5.11523 5.15237 5.19881 5.26535 5.27203 5.46268 5.53064 5.71124 5.96827 6.15175 6.24620 6.40835 6.50589 6.71349 6.95838 6.96598 7.10591 8.33394 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026631 B = 0.006790 C = 0.005699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.171935 B = 4122.871947 C = 4912.209807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.184 4.184 3 C 0.007 3.993 4 N -0.483 5.483 5 C 0.125 3.875 6 C -0.149 4.149 7 C -0.150 4.150 8 C 0.117 3.883 9 C -0.290 4.290 10 C 0.103 3.897 11 C -0.497 4.497 12 H 0.073 0.927 13 C 0.036 3.964 14 N -0.825 5.825 15 Si 0.985 3.015 16 H -0.259 1.259 17 H -0.262 1.262 18 H -0.264 1.264 19 C -0.173 4.173 20 C -0.083 4.083 21 C -0.211 4.211 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.079 0.921 25 H 0.186 0.814 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.289 0.711 35 H 0.106 0.894 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.487 11.422 1.945 11.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.192 4.192 3 C -0.117 4.117 4 N -0.168 5.168 5 C 0.024 3.976 6 C -0.207 4.207 7 C -0.208 4.208 8 C 0.011 3.989 9 C -0.313 4.313 10 C 0.100 3.900 11 C -0.526 4.526 12 H 0.091 0.909 13 C -0.179 4.179 14 N -0.451 5.451 15 Si 0.805 3.195 16 H -0.183 1.183 17 H -0.186 1.186 18 H -0.189 1.189 19 C -0.192 4.192 20 C -0.102 4.102 21 C -0.215 4.215 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.097 0.903 25 H 0.203 0.797 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.348 11.511 1.798 11.728 hybrid contribution 0.652 -1.079 -0.057 1.262 sum -0.696 10.432 1.740 10.599 Atomic orbital electron populations 1.20031 0.88770 1.02051 1.01340 1.19530 0.96249 0.91178 1.12212 1.21620 0.81685 0.99114 1.09297 1.44178 1.06215 1.02998 1.63395 1.21431 0.87098 0.90936 0.98169 1.22090 1.04259 0.99177 0.95132 1.22106 1.04273 0.99221 0.95217 1.18297 0.95316 0.83352 1.01964 1.19725 0.94701 0.91991 1.24911 1.17606 0.93286 0.91192 0.87947 1.19707 0.98139 0.97267 1.37520 0.90920 1.26786 0.97711 1.01668 0.91704 1.69918 1.28723 1.23974 1.22470 0.85134 0.78318 0.76835 0.79235 1.18280 1.18600 1.18872 1.20939 0.92769 0.98726 1.06813 1.20179 0.97715 0.91738 1.00570 1.18205 0.92891 0.93460 1.16930 0.92198 0.93157 0.90262 0.79658 0.90937 0.93939 0.90779 0.88533 0.90769 0.88492 0.94225 0.89933 0.90009 0.87635 0.87498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.95 10.37 71.24 0.74 -1.21 16 2 C -0.18 -7.24 6.14 -19.84 -0.12 -7.36 16 3 C 0.01 0.23 10.16 83.14 0.85 1.07 16 4 N -0.48 -18.66 2.67 -493.28 -1.32 -19.98 16 5 C 0.13 3.72 3.56 44.99 0.16 3.88 16 6 C -0.15 -3.38 9.24 71.98 0.66 -2.72 16 7 C -0.15 -3.52 9.24 71.98 0.66 -2.85 16 8 C 0.12 5.78 6.81 38.87 0.26 6.04 16 9 C -0.29 -15.76 9.56 22.84 0.22 -15.55 16 10 C 0.10 5.99 5.57 -21.28 -0.12 5.87 16 11 C -0.50 -28.18 9.01 23.35 0.21 -27.97 16 12 H 0.07 4.01 7.91 -2.91 -0.02 3.98 16 13 C 0.04 1.89 5.12 85.23 0.44 2.32 16 14 N -0.82 -44.55 10.97 21.82 0.24 -44.31 16 15 Si 0.98 39.21 29.60 68.60 2.03 41.24 16 16 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 17 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 18 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 19 C -0.17 -9.75 8.59 22.43 0.19 -9.56 16 20 C -0.08 -4.26 10.03 22.25 0.22 -4.03 16 21 C -0.21 -10.31 6.13 -21.18 -0.13 -10.44 16 22 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 23 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.19 4.65 8.06 -2.91 -0.02 4.62 16 26 H 0.07 2.40 7.39 -2.38 -0.02 2.38 16 27 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.07 1.47 7.92 -2.39 -0.02 1.45 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.51 7.92 -2.38 -0.02 1.49 16 31 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 4.34 7.59 -2.91 -0.02 4.32 16 34 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 35 H 0.11 6.07 6.16 -2.91 -0.02 6.06 16 36 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -66.89 300.36 6.25 -60.64 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 1.05 Total: 24.91 kcal Atomic # 6 Polarization: -66.75 SS G_CDS: 4.25 Total: -62.50 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -1.08 Total: -64.28 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -66.89 6.25 -60.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260512933.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.373 kcal (2) G-P(sol) polarization free energy of solvation -66.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds