Wall clock time and date at job start Mon Mar 30 2020 05:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48495 * 109.47094 * 270.00246 * 3 2 1 5 5 H 1.48501 * 109.46687 * 29.99923 * 3 2 1 6 6 H 1.48500 * 109.47221 * 149.99736 * 3 2 1 7 7 C 1.37884 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99471 * 174.85082 * 7 2 1 9 9 C 1.50699 * 119.99821 * 354.85406 * 7 2 1 10 10 H 1.08997 * 110.66322 * 24.97845 * 9 7 2 11 11 C 1.54603 * 110.74055 * 261.77236 * 9 7 2 12 12 N 1.47898 * 102.62880 * 215.88870 * 11 9 7 13 13 C 1.46896 * 111.00080 * 149.00325 * 12 11 9 14 14 C 1.52999 * 109.47596 * 75.26865 * 13 12 11 15 15 C 1.53003 * 117.49535 * 243.50925 * 14 13 12 16 16 C 1.52997 * 117.50011 * 174.88555 * 14 13 12 17 17 C 1.40032 * 107.91414 * 27.16167 * 12 11 9 18 18 C 1.39404 * 129.94602 * 161.92861 * 17 12 11 19 19 C 1.37913 * 120.19983 * 179.67034 * 18 17 12 20 20 C 1.38305 * 120.26540 * 0.03186 * 19 18 17 21 21 C 1.38301 * 119.88333 * 0.13237 * 20 19 18 22 22 C 1.37928 * 120.07855 * 359.96999 * 21 20 19 23 23 H 0.97005 * 120.00162 * 359.97438 * 1 2 3 24 24 H 1.08997 * 110.77713 * 334.17536 * 11 9 7 25 25 H 1.08996 * 110.77422 * 97.60438 * 11 9 7 26 26 H 1.08999 * 109.47109 * 195.26913 * 13 12 11 27 27 H 1.08999 * 109.47108 * 315.26261 * 13 12 11 28 28 H 1.09002 * 115.54845 * 29.21034 * 14 13 12 29 29 H 1.08996 * 117.50033 * 359.97438 * 15 14 13 30 30 H 1.09006 * 117.49338 * 145.02087 * 15 14 13 31 31 H 1.09003 * 117.49882 * 214.97534 * 16 14 13 32 32 H 1.08996 * 117.50045 * 359.97335 * 16 14 13 33 33 H 1.08002 * 119.90030 * 359.69449 * 18 17 12 34 34 H 1.07997 * 119.86466 * 180.02562 * 19 18 17 35 35 H 1.07998 * 120.05969 * 180.14572 * 20 19 18 36 36 H 1.07997 * 119.96538 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0812 -1.1959 -0.0845 9 6 1.2555 -2.4966 0.1159 10 1 0.2319 -2.3850 -0.2416 11 6 1.2733 -3.0099 1.5742 12 7 1.3648 -4.4758 1.3998 13 6 2.0999 -5.0933 2.5117 14 6 1.2063 -5.1356 3.7529 15 6 1.6526 -4.3265 4.9725 16 6 1.7493 -5.8534 4.9901 17 6 2.0009 -4.7253 0.1776 18 6 2.6185 -5.8844 -0.2898 19 6 3.1839 -5.9104 -1.5474 20 6 3.1430 -4.7872 -2.3534 21 6 2.5352 -3.6323 -1.8956 22 6 1.9701 -3.6005 -0.6379 23 1 -0.4851 0.8401 0.0004 24 1 2.1441 -2.6288 2.1076 25 1 0.3527 -2.7387 2.0908 26 1 2.3887 -6.1078 2.2372 27 1 2.9931 -4.5069 2.7268 28 1 0.1359 -5.2059 3.5594 29 1 2.5829 -3.7645 4.8906 30 1 0.8756 -3.8644 5.5815 31 1 1.0360 -6.3958 5.6109 32 1 2.7429 -6.2960 4.9197 33 1 2.6539 -6.7649 0.3347 34 1 3.6606 -6.8114 -1.9043 35 1 3.5848 -4.8120 -3.3386 36 1 2.5022 -2.7546 -2.5241 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260518852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:22 Heat of formation + Delta-G solvation = 57.201876 kcal Electronic energy + Delta-G solvation = -17195.143239 eV Core-core repulsion = 14644.681219 eV Total energy + Delta-G solvation = -2550.462020 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.92935 -37.36144 -35.56222 -33.31541 -31.19258 -29.15418 -28.06564 -26.19087 -24.02143 -22.32048 -21.92204 -20.63966 -20.26972 -19.59252 -16.62268 -16.08506 -15.46218 -14.99222 -14.56666 -14.44350 -14.27444 -13.64038 -13.28695 -12.71931 -12.44356 -12.17438 -11.94436 -11.49089 -11.43618 -11.18820 -11.05214 -10.90511 -10.76485 -10.49731 -10.37912 -10.07983 -9.70549 -9.42692 -9.28697 -9.16996 -8.59495 -7.96034 -6.94153 -6.10930 -4.16507 2.10359 2.20634 3.25172 3.32535 3.36229 3.91213 4.30364 4.34937 4.65010 4.96093 5.05675 5.16027 5.17099 5.48227 5.58216 5.65805 5.69789 5.71519 5.83454 5.89591 6.00866 6.11768 6.20557 6.21943 6.36043 6.40887 6.48190 6.55747 6.75001 6.91952 7.14613 7.27832 7.40860 7.52257 7.58995 7.78250 7.85785 8.04773 8.30033 8.91974 9.47845 10.96132 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.009047 C = 0.006210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.752965 B = 3094.042770 C = 4507.719043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.066 3.934 10 H 0.083 0.917 11 C 0.058 3.942 12 N -0.479 5.479 13 C 0.080 3.920 14 C -0.141 4.141 15 C -0.180 4.180 16 C -0.183 4.183 17 C 0.080 3.920 18 C -0.151 4.151 19 C -0.120 4.120 20 C -0.155 4.155 21 C -0.081 4.081 22 C -0.091 4.091 23 H 0.264 0.736 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.014 -9.533 4.091 11.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.075 0.925 9 C 0.047 3.953 10 H 0.101 0.899 11 C -0.067 4.067 12 N -0.192 5.192 13 C -0.046 4.046 14 C -0.159 4.159 15 C -0.217 4.217 16 C -0.220 4.220 17 C -0.018 4.018 18 C -0.172 4.172 19 C -0.139 4.139 20 C -0.174 4.174 21 C -0.100 4.100 22 C -0.094 4.094 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.129 0.871 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.306 -9.601 4.203 10.990 hybrid contribution 1.066 1.170 0.098 1.586 sum 4.372 -8.431 4.301 10.426 Atomic orbital electron populations 1.69914 1.05994 1.27000 1.49630 1.25021 0.94851 0.99338 0.94262 0.86587 0.79938 0.83205 0.78295 1.20487 1.21070 1.19783 1.20938 0.93165 0.89618 1.51103 0.92496 1.18788 0.97952 0.90616 0.87897 0.89946 1.23649 1.00648 0.81000 1.01445 1.60563 1.44809 1.14001 0.99843 1.21841 0.93817 0.99380 0.89608 1.22288 1.00638 1.04249 0.88745 1.23029 1.03201 0.93520 1.01986 1.22928 1.02354 0.95111 1.01624 1.19775 0.94529 0.94585 0.92937 1.20267 1.03168 0.96483 0.97250 1.20592 1.01184 0.97995 0.94107 1.20895 1.03163 0.93730 0.99603 1.20450 0.96942 0.97416 0.95177 1.21394 0.97801 0.95630 0.94561 0.92632 0.93305 0.90534 0.90870 0.93905 0.87059 0.88923 0.88929 0.89008 0.89132 0.87474 0.87077 0.87056 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.07 12.81 55.43 0.71 -24.36 16 2 C 0.07 1.85 5.45 -17.82 -0.10 1.75 16 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.51 -13.71 8.22 -34.44 -0.28 -14.00 16 8 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 9 C 0.07 1.66 3.16 -91.65 -0.29 1.37 16 10 H 0.08 2.32 7.32 -51.93 -0.38 1.94 16 11 C 0.06 1.30 6.09 -2.43 -0.01 1.28 16 12 N -0.48 -9.56 4.98 -169.03 -0.84 -10.40 16 13 C 0.08 1.32 5.09 -3.83 -0.02 1.30 16 14 C -0.14 -2.03 5.63 -90.62 -0.51 -2.55 16 15 C -0.18 -2.36 10.18 -26.73 -0.27 -2.64 16 16 C -0.18 -2.14 10.25 -26.73 -0.27 -2.41 16 17 C 0.08 1.65 5.96 -83.41 -0.50 1.15 16 18 C -0.15 -2.69 9.44 -39.27 -0.37 -3.06 16 19 C -0.12 -1.99 10.02 -39.68 -0.40 -2.39 16 20 C -0.15 -2.71 10.06 -39.53 -0.40 -3.11 16 21 C -0.08 -1.68 9.88 -39.67 -0.39 -2.08 16 22 C -0.09 -2.07 5.66 -104.04 -0.59 -2.66 16 23 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 24 H 0.05 1.11 7.36 -51.93 -0.38 0.72 16 25 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 26 H 0.07 1.11 6.65 -51.93 -0.35 0.77 16 27 H 0.04 0.73 7.42 -51.93 -0.39 0.34 16 28 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 29 H 0.09 1.23 8.03 -51.93 -0.42 0.81 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.11 1.66 7.11 -52.49 -0.37 1.29 16 34 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 LS Contribution 298.65 15.07 4.50 4.50 Total: -1.00 -27.96 298.65 -10.27 -38.23 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.21 Total: 4.25 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -4.40 Total: -28.02 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: -0.13 Total: -34.77 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.96 -10.27 -38.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.427 kcal (2) G-P(sol) polarization free energy of solvation -27.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds