Wall clock time and date at job start Mon Mar 30 2020 05:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48495 * 109.47094 * 270.00246 * 3 2 1 5 5 H 1.48501 * 109.46687 * 29.99923 * 3 2 1 6 6 H 1.48500 * 109.47221 * 149.99736 * 3 2 1 7 7 C 1.37884 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99471 * 174.85082 * 7 2 1 9 9 C 1.50699 * 119.99821 * 354.85406 * 7 2 1 10 10 H 1.08997 * 110.66322 * 24.97845 * 9 7 2 11 11 C 1.54603 * 110.74055 * 261.77236 * 9 7 2 12 12 N 1.47898 * 102.62880 * 215.88870 * 11 9 7 13 13 C 1.46896 * 111.00080 * 149.00325 * 12 11 9 14 14 C 1.52999 * 109.47596 * 75.26865 * 13 12 11 15 15 C 1.53003 * 117.49535 * 243.50925 * 14 13 12 16 16 C 1.52997 * 117.50011 * 174.88555 * 14 13 12 17 17 C 1.40032 * 107.91414 * 27.16167 * 12 11 9 18 18 C 1.39404 * 129.94602 * 161.92861 * 17 12 11 19 19 C 1.37913 * 120.19983 * 179.67034 * 18 17 12 20 20 C 1.38305 * 120.26540 * 0.03186 * 19 18 17 21 21 C 1.38301 * 119.88333 * 0.13237 * 20 19 18 22 22 C 1.37928 * 120.07855 * 359.96999 * 21 20 19 23 23 H 0.97005 * 120.00162 * 359.97438 * 1 2 3 24 24 H 1.08997 * 110.77713 * 334.17536 * 11 9 7 25 25 H 1.08996 * 110.77422 * 97.60438 * 11 9 7 26 26 H 1.08999 * 109.47109 * 195.26913 * 13 12 11 27 27 H 1.08999 * 109.47108 * 315.26261 * 13 12 11 28 28 H 1.09002 * 115.54845 * 29.21034 * 14 13 12 29 29 H 1.08996 * 117.50033 * 359.97438 * 15 14 13 30 30 H 1.09006 * 117.49338 * 145.02087 * 15 14 13 31 31 H 1.09003 * 117.49882 * 214.97534 * 16 14 13 32 32 H 1.08996 * 117.50045 * 359.97335 * 16 14 13 33 33 H 1.08002 * 119.90030 * 359.69449 * 18 17 12 34 34 H 1.07997 * 119.86466 * 180.02562 * 19 18 17 35 35 H 1.07998 * 120.05969 * 180.14572 * 20 19 18 36 36 H 1.07997 * 119.96538 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0812 -1.1959 -0.0845 9 6 1.2555 -2.4966 0.1159 10 1 0.2319 -2.3850 -0.2416 11 6 1.2733 -3.0099 1.5742 12 7 1.3648 -4.4758 1.3998 13 6 2.0999 -5.0933 2.5117 14 6 1.2063 -5.1356 3.7529 15 6 1.6526 -4.3265 4.9725 16 6 1.7493 -5.8534 4.9901 17 6 2.0009 -4.7253 0.1776 18 6 2.6185 -5.8844 -0.2898 19 6 3.1839 -5.9104 -1.5474 20 6 3.1430 -4.7872 -2.3534 21 6 2.5352 -3.6323 -1.8956 22 6 1.9701 -3.6005 -0.6379 23 1 -0.4851 0.8401 0.0004 24 1 2.1441 -2.6288 2.1076 25 1 0.3527 -2.7387 2.0908 26 1 2.3887 -6.1078 2.2372 27 1 2.9931 -4.5069 2.7268 28 1 0.1359 -5.2059 3.5594 29 1 2.5829 -3.7645 4.8906 30 1 0.8756 -3.8644 5.5815 31 1 1.0360 -6.3958 5.6109 32 1 2.7429 -6.2960 4.9197 33 1 2.6539 -6.7649 0.3347 34 1 3.6606 -6.8114 -1.9043 35 1 3.5848 -4.8120 -3.3386 36 1 2.5022 -2.7546 -2.5241 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260518852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:22 Heat of formation + Delta-G solvation = 42.830688 kcal Electronic energy + Delta-G solvation = -17195.766421 eV Core-core repulsion = 14644.681219 eV Total energy + Delta-G solvation = -2551.085201 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.49082 -38.54954 -37.00915 -35.22074 -32.94554 -30.60011 -29.74051 -27.84064 -25.78049 -23.66160 -23.17153 -22.07286 -21.80596 -21.03210 -18.60537 -17.66588 -16.76128 -16.63900 -16.19433 -15.93329 -15.71067 -15.01597 -14.83166 -14.22722 -14.08066 -13.81451 -13.51500 -13.06618 -12.91627 -12.79932 -12.48201 -12.37255 -12.34422 -12.19009 -11.96219 -11.40577 -11.23048 -11.13300 -10.85438 -10.75469 -10.58685 -9.51937 -8.54823 -8.15445 -6.31408 0.61530 0.69814 1.38053 1.38943 1.49990 2.37847 2.73729 2.95317 3.08139 3.15901 3.79023 3.95677 3.98276 4.14566 4.30105 4.31019 4.33045 4.46859 4.50278 4.67690 4.72334 4.77876 4.79993 4.81794 4.91123 5.01986 5.12715 5.25149 5.27071 5.34480 5.47527 5.63620 5.68916 5.72572 5.87550 5.92747 6.24211 6.28852 6.53046 6.81431 7.35598 8.88440 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.009047 C = 0.006210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.752965 B = 3094.042770 C = 4507.719043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.018 3.982 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.520 4.520 8 H 0.048 0.952 9 C 0.061 3.939 10 H 0.037 0.963 11 C 0.075 3.925 12 N -0.482 5.482 13 C 0.083 3.917 14 C -0.163 4.163 15 C -0.189 4.189 16 C -0.151 4.151 17 C 0.065 3.935 18 C -0.146 4.146 19 C -0.105 4.105 20 C -0.148 4.148 21 C -0.101 4.101 22 C -0.135 4.135 23 H 0.265 0.735 24 H 0.040 0.960 25 H 0.061 0.939 26 H 0.093 0.907 27 H 0.035 0.965 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.159 0.841 35 H 0.146 0.854 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.938 -11.810 4.313 13.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.181 4.181 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.558 4.558 8 H 0.067 0.933 9 C 0.042 3.958 10 H 0.055 0.945 11 C -0.051 4.051 12 N -0.196 5.196 13 C -0.043 4.043 14 C -0.182 4.182 15 C -0.226 4.226 16 C -0.188 4.188 17 C -0.033 4.033 18 C -0.167 4.167 19 C -0.123 4.123 20 C -0.167 4.167 21 C -0.120 4.120 22 C -0.138 4.138 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.111 0.889 27 H 0.053 0.947 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.156 0.844 34 H 0.176 0.824 35 H 0.164 0.836 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.241 -11.895 4.426 13.731 hybrid contribution 0.493 1.763 -0.033 1.831 sum 5.733 -10.132 4.393 12.443 Atomic orbital electron populations 1.70048 1.07454 1.27780 1.50892 1.25799 0.95623 1.02675 0.94007 0.85571 0.78727 0.79010 0.78501 1.19846 1.20469 1.19207 1.21143 0.92826 0.90983 1.50890 0.93331 1.18599 0.95688 0.91539 0.90009 0.94513 1.23197 0.99353 0.83227 0.99350 1.60546 1.45926 1.12041 1.01102 1.21914 0.93510 0.99669 0.89168 1.22191 0.99766 1.07247 0.88973 1.23091 1.03106 0.95081 1.01346 1.23032 1.03216 0.93864 0.98695 1.20037 0.95392 0.95200 0.92698 1.20683 1.01674 0.96155 0.98213 1.21144 0.99198 0.99010 0.92917 1.21259 1.01737 0.92569 1.01133 1.20575 0.98127 0.98682 0.94610 1.21311 1.00362 0.95874 0.96254 0.92574 0.94168 0.92045 0.88904 0.94715 0.88281 0.89447 0.88448 0.87080 0.87661 0.84361 0.82367 0.83647 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.72 12.81 21.45 0.27 -54.45 16 2 C 0.02 1.03 5.45 84.66 0.46 1.49 16 3 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.52 -29.43 8.22 25.60 0.21 -29.22 16 8 H 0.05 2.75 7.82 -2.91 -0.02 2.73 16 9 C 0.06 3.25 3.16 -11.46 -0.04 3.21 16 10 H 0.04 2.25 7.32 -2.39 -0.02 2.24 16 11 C 0.08 3.55 6.09 86.66 0.53 4.08 16 12 N -0.48 -19.58 4.98 -688.70 -3.43 -23.01 16 13 C 0.08 2.66 5.09 86.30 0.44 3.10 16 14 C -0.16 -4.58 5.63 -10.79 -0.06 -4.64 16 15 C -0.19 -4.78 10.18 30.60 0.31 -4.47 16 16 C -0.15 -3.11 10.25 30.60 0.31 -2.80 16 17 C 0.06 2.65 5.96 38.29 0.23 2.88 16 18 C -0.15 -4.75 9.44 22.47 0.21 -4.54 16 19 C -0.10 -3.00 10.02 22.21 0.22 -2.77 16 20 C -0.15 -4.79 10.06 22.30 0.22 -4.57 16 21 C -0.10 -4.25 9.88 22.21 0.22 -4.03 16 22 C -0.14 -6.37 5.66 -19.49 -0.11 -6.48 16 23 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 24 H 0.04 1.92 7.36 -2.39 -0.02 1.91 16 25 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 26 H 0.09 2.56 6.65 -2.39 -0.02 2.55 16 27 H 0.03 1.16 7.42 -2.39 -0.02 1.14 16 28 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 29 H 0.09 2.29 8.03 -2.39 -0.02 2.27 16 30 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.14 3.61 7.11 -2.91 -0.02 3.59 16 34 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 35 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 36 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -64.03 298.65 3.09 -60.95 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 1.05 Total: 19.32 kcal Atomic # 6 Polarization: -51.91 SS G_CDS: 3.16 Total: -48.75 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -3.16 Total: -77.45 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -64.03 3.09 -60.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.776 kcal (2) G-P(sol) polarization free energy of solvation -64.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds