Wall clock time and date at job start Mon Mar 30 2020 05:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99943 * 2 1 4 4 H 1.48500 * 109.46847 * 269.99464 * 3 2 1 5 5 H 1.48496 * 109.46942 * 29.99400 * 3 2 1 6 6 H 1.48497 * 109.46877 * 149.99716 * 3 2 1 7 7 C 1.37876 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99785 * 174.15473 * 7 2 1 9 9 C 1.50700 * 120.00311 * 353.87109 * 7 2 1 10 10 H 1.09005 * 110.65487 * 338.17211 * 9 7 2 11 11 C 1.54605 * 110.73795 * 101.56226 * 9 7 2 12 12 N 1.47911 * 102.62081 * 143.87489 * 11 9 7 13 13 C 1.46902 * 110.99804 * 94.53156 * 12 11 9 14 14 C 1.52999 * 109.46863 * 170.15043 * 13 12 11 15 15 C 1.53007 * 117.49540 * 243.61805 * 14 13 12 16 16 C 1.53004 * 117.49569 * 174.99757 * 14 13 12 17 17 C 1.40039 * 107.88375 * 332.71242 * 12 11 9 18 18 C 1.39396 * 129.95528 * 197.96479 * 17 12 11 19 19 C 1.37911 * 120.20077 * 180.72217 * 18 17 12 20 20 C 1.38308 * 120.26301 * 359.97438 * 19 18 17 21 21 C 1.38306 * 119.88104 * 359.88324 * 20 19 18 22 22 C 1.37915 * 120.08073 * 0.02562 * 21 20 19 23 23 H 0.96999 * 119.99948 * 0.02562 * 1 2 3 24 24 H 1.09001 * 110.77749 * 262.15618 * 11 9 7 25 25 H 1.08994 * 110.77922 * 25.58884 * 11 9 7 26 26 H 1.09001 * 109.47145 * 290.14179 * 13 12 11 27 27 H 1.08996 * 109.47722 * 50.14335 * 13 12 11 28 28 H 1.08998 * 115.55674 * 29.32641 * 14 13 12 29 29 H 1.08993 * 117.49892 * 359.97438 * 15 14 13 30 30 H 1.09001 * 117.50045 * 145.02414 * 15 14 13 31 31 H 1.09004 * 117.49816 * 214.97322 * 16 14 13 32 32 H 1.08993 * 117.50369 * 359.97438 * 16 14 13 33 33 H 1.08009 * 119.90166 * 0.71707 * 18 17 12 34 34 H 1.07995 * 119.86975 * 180.02562 * 19 18 17 35 35 H 1.07991 * 120.05860 * 179.89806 * 20 19 18 36 36 H 1.08001 * 119.95622 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0803 -1.1965 -0.0947 9 6 1.2575 -2.4954 0.1405 10 1 0.2843 -2.3322 0.6036 11 6 1.1054 -3.1897 -1.2325 12 7 1.2348 -4.6219 -0.8865 13 6 -0.0841 -5.2346 -0.6792 14 6 0.0706 -6.7526 -0.5675 15 6 -0.5952 -7.6117 -1.6445 16 6 -1.1801 -7.5674 -0.2313 17 6 2.0192 -4.7158 0.2697 18 6 2.7018 -5.8084 0.8021 19 6 3.4113 -5.6776 1.9775 20 6 3.4512 -4.4620 2.6359 21 6 2.7790 -3.3724 2.1125 22 6 2.0696 -3.4976 0.9365 23 1 -0.4850 0.8400 -0.0004 24 1 0.1260 -2.9830 -1.6640 25 1 1.9008 -2.8824 -1.9114 26 1 -0.5251 -4.8459 0.2388 27 1 -0.7321 -4.9965 -1.5226 28 1 1.0213 -7.0999 -0.1628 29 1 -1.1437 -7.0954 -2.4322 30 1 -0.0825 -8.5243 -1.9486 31 1 -1.0521 -8.4508 0.3942 32 1 -2.1129 -7.0220 -0.0893 33 1 2.6749 -6.7604 0.2926 34 1 3.9385 -6.5275 2.3849 35 1 4.0064 -4.3636 3.5569 36 1 2.8097 -2.4225 2.6255 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260518855.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:25 Heat of formation + Delta-G solvation = 62.244149 kcal Electronic energy + Delta-G solvation = -17297.193184 eV Core-core repulsion = 14746.949813 eV Total energy + Delta-G solvation = -2550.243370 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.04532 -37.19902 -35.74052 -33.17717 -30.99060 -29.16066 -28.10318 -26.19339 -23.94192 -22.25982 -22.11025 -20.97332 -19.98575 -19.57181 -16.60191 -16.12763 -15.38151 -15.02673 -14.74297 -14.41489 -14.02772 -13.62411 -13.17271 -12.71366 -12.49762 -12.26867 -11.82458 -11.61605 -11.40537 -11.21930 -11.07415 -10.80183 -10.70487 -10.53029 -10.40206 -10.05181 -9.82352 -9.35030 -9.33706 -8.79463 -8.44924 -7.99748 -7.10132 -6.14491 -4.16814 2.04111 2.17263 3.25234 3.32429 3.36907 3.94080 4.31320 4.42381 4.54493 4.94000 5.11220 5.15029 5.18995 5.51695 5.62558 5.70119 5.72526 5.76155 5.82389 5.99601 6.07768 6.13049 6.21148 6.22844 6.35236 6.36775 6.52857 6.66144 6.80382 6.94224 7.10656 7.27512 7.38411 7.46796 7.57097 7.77330 7.80836 8.08124 8.27247 8.89759 9.46764 10.94569 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023842 B = 0.007531 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.133679 B = 3717.250725 C = 4599.541782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.504 4.504 8 H 0.058 0.942 9 C 0.047 3.953 10 H 0.074 0.926 11 C 0.056 3.944 12 N -0.498 5.498 13 C 0.091 3.909 14 C -0.146 4.146 15 C -0.178 4.178 16 C -0.185 4.185 17 C 0.076 3.924 18 C -0.122 4.122 19 C -0.131 4.131 20 C -0.142 4.142 21 C -0.090 4.090 22 C -0.091 4.091 23 H 0.263 0.737 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.399 -11.326 1.044 11.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.027 3.973 10 H 0.091 0.909 11 C -0.070 4.070 12 N -0.216 5.216 13 C -0.034 4.034 14 C -0.164 4.164 15 C -0.215 4.215 16 C -0.222 4.222 17 C -0.020 4.020 18 C -0.141 4.141 19 C -0.150 4.150 20 C -0.160 4.160 21 C -0.109 4.109 22 C -0.094 4.094 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.130 0.870 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.415 -11.467 0.565 11.489 hybrid contribution 0.105 1.323 0.563 1.442 sum 0.521 -10.144 1.128 10.220 Atomic orbital electron populations 1.69924 1.06052 1.27016 1.49956 1.25018 0.94874 0.99391 0.94374 0.86552 0.79958 0.83038 0.78288 1.20508 1.21119 1.19701 1.20857 0.93363 0.89405 1.50585 0.92330 1.19091 0.96310 0.92046 0.89812 0.90852 1.23476 1.01266 0.82077 1.00219 1.60340 1.12133 1.18635 1.30511 1.21682 0.89917 0.91358 1.00483 1.22520 0.97327 0.93463 1.03124 1.22970 1.04244 1.02077 0.92195 1.22940 0.97919 1.02523 0.98857 1.19654 0.97212 0.94306 0.90808 1.20385 0.99680 0.97102 0.96974 1.20661 1.00984 0.97384 0.95976 1.20956 1.01613 0.93286 1.00164 1.20465 0.96574 0.98192 0.95651 1.21866 0.97019 0.96587 0.93885 0.92692 0.91426 0.90262 0.93992 0.90740 0.87032 0.88957 0.89266 0.89132 0.89001 0.87079 0.86953 0.86987 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.06 12.85 55.43 0.71 -24.34 16 2 C 0.07 1.78 5.45 -17.82 -0.10 1.69 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.50 -13.55 8.21 -34.44 -0.28 -13.83 16 8 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 9 C 0.05 1.16 3.07 -91.65 -0.28 0.88 16 10 H 0.07 2.01 7.39 -51.93 -0.38 1.63 16 11 C 0.06 1.25 6.52 -2.42 -0.02 1.23 16 12 N -0.50 -9.97 5.06 -169.01 -0.86 -10.83 16 13 C 0.09 1.59 5.03 -3.82 -0.02 1.58 16 14 C -0.15 -2.14 5.70 -90.62 -0.52 -2.66 16 15 C -0.18 -2.19 10.18 -26.72 -0.27 -2.47 16 16 C -0.18 -2.27 10.25 -26.73 -0.27 -2.54 16 17 C 0.08 1.56 5.31 -83.41 -0.44 1.11 16 18 C -0.12 -2.15 8.92 -39.27 -0.35 -2.50 16 19 C -0.13 -2.14 10.02 -39.68 -0.40 -2.54 16 20 C -0.14 -2.45 10.06 -39.53 -0.40 -2.85 16 21 C -0.09 -1.86 9.87 -39.67 -0.39 -2.25 16 22 C -0.09 -2.05 5.65 -104.04 -0.59 -2.64 16 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.07 1.49 7.60 -51.93 -0.39 1.09 16 25 H 0.08 1.83 7.91 -51.93 -0.41 1.42 16 26 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 27 H 0.07 1.23 7.58 -51.93 -0.39 0.84 16 28 H 0.11 1.69 4.97 -51.93 -0.26 1.43 16 29 H 0.09 1.11 8.03 -51.93 -0.42 0.69 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.11 1.73 6.43 -52.48 -0.34 1.40 16 34 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 295.72 15.07 4.46 4.46 Total: -1.00 -27.89 295.72 -10.13 -38.02 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.10 Total: 4.62 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -4.33 Total: -27.79 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.14 Total: -35.17 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.89 -10.13 -38.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518855.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.261 kcal (2) G-P(sol) polarization free energy of solvation -27.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds