Wall clock time and date at job start Mon Mar 30 2020 05:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99943 * 2 1 4 4 H 1.48500 * 109.46847 * 269.99464 * 3 2 1 5 5 H 1.48496 * 109.46942 * 29.99400 * 3 2 1 6 6 H 1.48497 * 109.46877 * 149.99716 * 3 2 1 7 7 C 1.37876 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99785 * 174.15473 * 7 2 1 9 9 C 1.50700 * 120.00311 * 353.87109 * 7 2 1 10 10 H 1.09005 * 110.65487 * 338.17211 * 9 7 2 11 11 C 1.54605 * 110.73795 * 101.56226 * 9 7 2 12 12 N 1.47911 * 102.62081 * 143.87489 * 11 9 7 13 13 C 1.46902 * 110.99804 * 94.53156 * 12 11 9 14 14 C 1.52999 * 109.46863 * 170.15043 * 13 12 11 15 15 C 1.53007 * 117.49540 * 243.61805 * 14 13 12 16 16 C 1.53004 * 117.49569 * 174.99757 * 14 13 12 17 17 C 1.40039 * 107.88375 * 332.71242 * 12 11 9 18 18 C 1.39396 * 129.95528 * 197.96479 * 17 12 11 19 19 C 1.37911 * 120.20077 * 180.72217 * 18 17 12 20 20 C 1.38308 * 120.26301 * 359.97438 * 19 18 17 21 21 C 1.38306 * 119.88104 * 359.88324 * 20 19 18 22 22 C 1.37915 * 120.08073 * 0.02562 * 21 20 19 23 23 H 0.96999 * 119.99948 * 0.02562 * 1 2 3 24 24 H 1.09001 * 110.77749 * 262.15618 * 11 9 7 25 25 H 1.08994 * 110.77922 * 25.58884 * 11 9 7 26 26 H 1.09001 * 109.47145 * 290.14179 * 13 12 11 27 27 H 1.08996 * 109.47722 * 50.14335 * 13 12 11 28 28 H 1.08998 * 115.55674 * 29.32641 * 14 13 12 29 29 H 1.08993 * 117.49892 * 359.97438 * 15 14 13 30 30 H 1.09001 * 117.50045 * 145.02414 * 15 14 13 31 31 H 1.09004 * 117.49816 * 214.97322 * 16 14 13 32 32 H 1.08993 * 117.50369 * 359.97438 * 16 14 13 33 33 H 1.08009 * 119.90166 * 0.71707 * 18 17 12 34 34 H 1.07995 * 119.86975 * 180.02562 * 19 18 17 35 35 H 1.07991 * 120.05860 * 179.89806 * 20 19 18 36 36 H 1.08001 * 119.95622 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0803 -1.1965 -0.0947 9 6 1.2575 -2.4954 0.1405 10 1 0.2843 -2.3322 0.6036 11 6 1.1054 -3.1897 -1.2325 12 7 1.2348 -4.6219 -0.8865 13 6 -0.0841 -5.2346 -0.6792 14 6 0.0706 -6.7526 -0.5675 15 6 -0.5952 -7.6117 -1.6445 16 6 -1.1801 -7.5674 -0.2313 17 6 2.0192 -4.7158 0.2697 18 6 2.7018 -5.8084 0.8021 19 6 3.4113 -5.6776 1.9775 20 6 3.4512 -4.4620 2.6359 21 6 2.7790 -3.3724 2.1125 22 6 2.0696 -3.4976 0.9365 23 1 -0.4850 0.8400 -0.0004 24 1 0.1260 -2.9830 -1.6640 25 1 1.9008 -2.8824 -1.9114 26 1 -0.5251 -4.8459 0.2388 27 1 -0.7321 -4.9965 -1.5226 28 1 1.0213 -7.0999 -0.1628 29 1 -1.1437 -7.0954 -2.4322 30 1 -0.0825 -8.5243 -1.9486 31 1 -1.0521 -8.4508 0.3942 32 1 -2.1129 -7.0220 -0.0893 33 1 2.6749 -6.7604 0.2926 34 1 3.9385 -6.5275 2.3849 35 1 4.0064 -4.3636 3.5569 36 1 2.8097 -2.4225 2.6255 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260518855.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:25 Heat of formation + Delta-G solvation = 47.823476 kcal Electronic energy + Delta-G solvation = -17297.818511 eV Core-core repulsion = 14746.949813 eV Total energy + Delta-G solvation = -2550.868698 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.61050 -38.38343 -37.19676 -35.11536 -32.70398 -30.63283 -29.77146 -27.84009 -25.76767 -23.73760 -23.19024 -22.32025 -21.64730 -20.97041 -18.63907 -17.57660 -16.88099 -16.49929 -16.23004 -16.15267 -15.40673 -15.06862 -14.63203 -14.28118 -14.17105 -13.91923 -13.43709 -13.11397 -12.92441 -12.84365 -12.56971 -12.35039 -12.28962 -12.22411 -11.91792 -11.38444 -11.18192 -11.10981 -10.95922 -10.67459 -10.13509 -9.53742 -8.70784 -8.21749 -6.31326 0.56359 0.67234 1.37896 1.38736 1.50076 2.37356 2.73612 3.01095 3.06103 3.08341 3.78478 4.02341 4.04237 4.19922 4.27424 4.28558 4.34946 4.50442 4.52592 4.66637 4.71684 4.77003 4.81259 4.90586 4.94641 5.04936 5.12152 5.25052 5.29871 5.35514 5.48281 5.62499 5.67219 5.76234 5.85252 5.93357 6.17124 6.26323 6.53794 6.78476 7.34448 8.86515 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023842 B = 0.007531 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.133679 B = 3717.250725 C = 4599.541782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.017 3.983 3 Si 0.958 3.042 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.516 4.516 8 H 0.048 0.952 9 C 0.045 3.955 10 H 0.032 0.968 11 C 0.064 3.936 12 N -0.492 5.492 13 C 0.093 3.907 14 C -0.166 4.166 15 C -0.165 4.165 16 C -0.172 4.172 17 C 0.062 3.938 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.134 4.134 21 C -0.111 4.111 22 C -0.133 4.133 23 H 0.265 0.735 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.017 0.983 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.160 0.840 35 H 0.147 0.853 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 -13.760 1.607 13.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.182 4.182 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.554 4.554 8 H 0.066 0.934 9 C 0.026 3.974 10 H 0.050 0.950 11 C -0.063 4.063 12 N -0.210 5.210 13 C -0.032 4.032 14 C -0.185 4.185 15 C -0.202 4.202 16 C -0.210 4.210 17 C -0.034 4.034 18 C -0.137 4.137 19 C -0.133 4.133 20 C -0.152 4.152 21 C -0.130 4.130 22 C -0.135 4.135 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.035 0.965 27 H 0.094 0.906 28 H 0.130 0.870 29 H 0.111 0.889 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.109 0.891 33 H 0.156 0.844 34 H 0.178 0.822 35 H 0.165 0.835 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.823 -13.917 1.130 14.081 hybrid contribution -0.314 1.990 0.443 2.063 sum 1.509 -11.927 1.573 12.125 Atomic orbital electron populations 1.70046 1.07423 1.27783 1.51085 1.25786 0.95660 1.02666 0.94114 0.85547 0.78697 0.78905 0.78527 1.19762 1.20568 1.19277 1.21071 0.92964 0.90928 1.50466 0.93351 1.18902 0.94646 0.92605 0.91294 0.95026 1.23160 1.00214 0.84161 0.98724 1.60406 1.13386 1.16438 1.30760 1.21705 0.88602 0.93632 0.99281 1.22354 0.98630 0.91267 1.06215 1.23069 1.03227 1.01852 0.92032 1.23041 0.96508 1.02246 0.99186 1.19893 0.98026 0.94658 0.90799 1.20760 0.98498 0.97077 0.97364 1.21206 0.99241 0.98220 0.94628 1.21323 1.00374 0.92433 1.01086 1.20595 0.97788 0.99201 0.95408 1.21763 0.99170 0.96952 0.95632 0.92618 0.92169 0.91493 0.96502 0.90593 0.86997 0.88913 0.87293 0.87116 0.89102 0.84356 0.82223 0.83480 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.38 12.85 21.45 0.28 -54.11 16 2 C 0.02 0.95 5.45 84.65 0.46 1.41 16 3 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.52 -29.20 8.21 25.60 0.21 -28.99 16 8 H 0.05 2.76 7.82 -2.91 -0.02 2.74 16 9 C 0.05 2.38 3.07 -11.46 -0.04 2.35 16 10 H 0.03 1.89 7.39 -2.38 -0.02 1.88 16 11 C 0.06 3.06 6.52 86.65 0.57 3.63 16 12 N -0.49 -20.14 5.06 -688.64 -3.48 -23.62 16 13 C 0.09 3.32 5.03 86.30 0.43 3.76 16 14 C -0.17 -4.61 5.70 -10.79 -0.06 -4.67 16 15 C -0.16 -3.63 10.18 30.60 0.31 -3.32 16 16 C -0.17 -3.81 10.25 30.60 0.31 -3.49 16 17 C 0.06 2.53 5.31 38.28 0.20 2.74 16 18 C -0.12 -3.82 8.92 22.47 0.20 -3.62 16 19 C -0.11 -3.25 10.02 22.21 0.22 -3.03 16 20 C -0.13 -4.27 10.06 22.30 0.22 -4.04 16 21 C -0.11 -4.63 9.87 22.21 0.22 -4.41 16 22 C -0.13 -6.18 5.65 -19.49 -0.11 -6.29 16 23 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 24 H 0.06 2.85 7.60 -2.39 -0.02 2.84 16 25 H 0.07 3.28 7.91 -2.39 -0.02 3.26 16 26 H 0.02 0.67 8.06 -2.39 -0.02 0.65 16 27 H 0.08 2.60 7.58 -2.39 -0.02 2.58 16 28 H 0.11 3.08 4.97 -2.39 -0.01 3.07 16 29 H 0.09 2.04 8.03 -2.39 -0.02 2.02 16 30 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.14 3.74 6.43 -2.91 -0.02 3.72 16 34 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.15 3.62 8.06 -2.92 -0.02 3.60 16 36 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -63.50 295.72 3.03 -60.46 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 1.06 Total: 19.20 kcal Atomic # 6 Polarization: -51.14 SS G_CDS: 3.16 Total: -47.98 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -3.21 Total: -77.73 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -63.50 3.03 -60.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518855.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.287 kcal (2) G-P(sol) polarization free energy of solvation -63.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds