Wall clock time and date at job start Mon Mar 30 2020 05:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00430 * 2 1 4 4 H 1.48501 * 109.46716 * 265.23622 * 3 2 1 5 5 H 1.48495 * 109.47023 * 25.23685 * 3 2 1 6 6 H 1.48493 * 109.47111 * 145.23934 * 3 2 1 7 7 C 1.37878 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99464 * 6.27768 * 7 2 1 9 9 C 1.50698 * 120.00578 * 186.27386 * 7 2 1 10 10 N 1.46497 * 110.43171 * 63.51129 * 9 7 2 11 11 C 1.39679 * 120.00034 * 59.71935 * 10 9 7 12 12 C 1.38906 * 120.07443 * 4.06202 * 11 10 9 13 13 C 1.38106 * 119.92566 * 179.76915 * 12 11 10 14 14 C 1.38285 * 120.07237 * 0.50937 * 13 12 11 15 15 C 1.38288 * 120.15092 * 359.74819 * 14 13 12 16 16 C 1.38104 * 120.07383 * 359.97438 * 15 14 13 17 17 C 1.54888 * 110.48314 * 300.97402 * 9 7 2 18 18 C 1.54896 * 102.74478 * 203.37550 * 17 9 7 19 19 C 1.54265 * 104.19712 * 37.94438 * 18 17 9 20 20 H 1.08996 * 117.41481 * 116.36842 * 19 18 17 21 21 C 1.53006 * 118.19684 * 271.00086 * 19 18 17 22 22 C 1.53886 * 106.59572 * 336.38727 * 19 18 17 23 23 H 1.09000 * 121.32476 * 137.49822 * 22 19 18 24 24 H 0.97003 * 119.99554 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00474 * 239.71744 * 10 9 7 26 26 H 1.08004 * 120.03941 * 0.02562 * 12 11 10 27 27 H 1.08003 * 119.96448 * 180.25625 * 13 12 11 28 28 H 1.07995 * 119.92768 * 179.72068 * 14 13 12 29 29 H 1.08002 * 119.96783 * 180.02562 * 15 14 13 30 30 H 1.07998 * 120.04201 * 179.97438 * 16 15 14 31 31 H 1.08997 * 110.76091 * 85.06492 * 17 9 7 32 32 H 1.08994 * 110.91488 * 321.76039 * 17 9 7 33 33 H 1.09001 * 110.48448 * 279.26348 * 18 17 9 34 34 H 1.08999 * 110.48739 * 156.61880 * 18 17 9 35 35 H 1.09003 * 117.46003 * 202.14761 * 21 19 18 36 36 H 1.09004 * 117.45957 * 346.95287 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.5975 1.9881 -1.3953 5 1 1.4001 2.6796 0.5969 6 1 3.4928 1.4712 0.7982 7 6 2.0045 -1.1941 0.0005 8 1 1.4693 -2.1266 -0.1013 9 6 3.5047 -1.1981 0.1431 10 7 3.8960 -0.6546 1.4461 11 6 3.4535 -1.2683 2.6202 12 6 2.7130 -2.4418 2.5559 13 6 2.2811 -3.0486 3.7189 14 6 2.5761 -2.4836 4.9461 15 6 3.3086 -1.3126 5.0135 16 6 3.7485 -0.7037 3.8547 17 6 4.1602 -0.3865 -1.0017 18 6 5.5898 -0.9793 -1.0658 19 6 5.3863 -2.4864 -0.8074 20 1 5.6501 -3.1735 -1.6113 21 6 5.4132 -2.9819 0.6400 22 6 4.0605 -2.6255 -0.0386 23 1 3.3437 -3.4096 -0.2824 24 1 -0.4849 0.8401 -0.0004 25 1 4.4625 0.1314 1.4935 26 1 2.4787 -2.8814 1.5976 27 1 1.7087 -3.9632 3.6697 28 1 2.2333 -2.9576 5.8538 29 1 3.5377 -0.8741 5.9736 30 1 4.3201 0.2110 3.9079 31 1 4.1928 0.6744 -0.7537 32 1 3.6335 -0.5457 -1.9426 33 1 6.2195 -0.5410 -0.2915 34 1 6.0263 -0.8168 -2.0512 35 1 5.6394 -4.0350 0.8067 36 1 5.7874 -2.2953 1.3994 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260520450.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:42 Heat of formation + Delta-G solvation = 72.507818 kcal Electronic energy + Delta-G solvation = -18131.517010 eV Core-core repulsion = 15581.718706 eV Total energy + Delta-G solvation = -2549.798304 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.64460 -37.77140 -34.05980 -32.35683 -30.87160 -30.06870 -28.40832 -26.93106 -23.55147 -22.52701 -21.59501 -21.01790 -19.56428 -18.58203 -17.19595 -16.19437 -15.46007 -15.20078 -14.60462 -14.34385 -13.60334 -13.15921 -13.03001 -12.61341 -12.41605 -12.37746 -12.19045 -11.74040 -11.13321 -11.11253 -10.96651 -10.59356 -10.46267 -10.23676 -10.10263 -9.84170 -9.41541 -9.20343 -9.02175 -8.86903 -8.58504 -8.03597 -6.30340 -6.19069 -4.21070 2.32515 2.55327 3.19899 3.24401 3.34534 4.20659 4.32498 4.56159 4.84787 5.11208 5.20460 5.43080 5.52522 5.69104 5.71971 5.75895 5.99733 6.02127 6.03259 6.19557 6.23525 6.27515 6.29874 6.46188 6.54591 6.63639 6.67721 6.80511 6.84822 6.88151 6.97817 7.30490 7.40901 7.49517 7.58203 7.80773 8.26904 8.54099 8.81911 8.88687 9.45098 10.92701 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.013044 C = 0.009575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.268225 B = 2146.132125 C = 2923.620436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.086 3.914 3 Si 0.891 3.109 4 H -0.284 1.284 5 H -0.301 1.301 6 H -0.260 1.260 7 C -0.513 4.513 8 H 0.079 0.921 9 C 0.293 3.707 10 N -0.728 5.728 11 C 0.251 3.749 12 C -0.157 4.157 13 C -0.088 4.088 14 C -0.203 4.203 15 C -0.086 4.086 16 C -0.223 4.223 17 C -0.133 4.133 18 C -0.093 4.093 19 C -0.178 4.178 20 H 0.098 0.902 21 C -0.154 4.154 22 C -0.136 4.136 23 H 0.107 0.893 24 H 0.265 0.735 25 H 0.377 0.623 26 H 0.137 0.863 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.386 -2.533 2.558 10.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.118 4.118 3 Si 0.721 3.279 4 H -0.211 1.211 5 H -0.229 1.229 6 H -0.186 1.186 7 C -0.551 4.551 8 H 0.097 0.903 9 C 0.209 3.791 10 N -0.355 5.355 11 C 0.144 3.856 12 C -0.179 4.179 13 C -0.107 4.107 14 C -0.223 4.223 15 C -0.105 4.105 16 C -0.247 4.247 17 C -0.171 4.171 18 C -0.131 4.131 19 C -0.196 4.196 20 H 0.116 0.884 21 C -0.191 4.191 22 C -0.156 4.156 23 H 0.125 0.875 24 H 0.075 0.925 25 H 0.212 0.788 26 H 0.155 0.845 27 H 0.125 0.875 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.144 -2.496 2.317 9.757 hybrid contribution 0.446 1.339 0.010 1.411 sum 9.590 -1.157 2.327 9.935 Atomic orbital electron populations 1.69920 1.06430 1.27197 1.48515 1.24933 0.94482 0.99129 0.93296 0.87024 0.79736 0.83413 0.77681 1.21130 1.22930 1.18562 1.20998 0.88480 0.94757 1.50897 0.90335 1.18632 0.94209 0.86793 0.79508 1.46070 1.54147 1.31502 1.03775 1.17687 0.91040 0.91000 0.85856 1.21004 1.01619 0.96295 0.98960 1.20846 0.98465 0.98888 0.92528 1.20604 1.05901 0.98867 0.96950 1.20571 0.97736 0.95510 0.96642 1.20456 1.09856 1.02458 0.91883 1.23244 0.94505 0.98487 1.00865 1.21957 0.97440 0.93446 1.00246 1.23171 1.04959 0.96722 0.94762 0.88430 1.23217 1.01232 1.00224 0.94403 1.24064 0.88473 0.99846 1.03176 0.87519 0.92535 0.78837 0.84546 0.87545 0.88034 0.87822 0.87912 0.92638 0.89806 0.92471 0.92317 0.89676 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.10 13.96 55.43 0.77 -25.32 16 2 C 0.09 2.35 5.46 -17.82 -0.10 2.26 16 3 Si 0.89 21.11 23.78 -169.99 -4.04 17.07 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.26 -5.62 4.43 56.52 0.25 -5.37 16 7 C -0.51 -13.19 6.77 -34.44 -0.23 -13.43 16 8 H 0.08 2.22 7.48 -52.48 -0.39 1.83 16 9 C 0.29 6.17 0.22 -131.32 -0.03 6.14 16 10 N -0.73 -14.88 2.89 -45.53 -0.13 -15.01 16 11 C 0.25 5.21 5.81 -83.79 -0.49 4.72 16 12 C -0.16 -3.30 8.04 -39.38 -0.32 -3.62 16 13 C -0.09 -1.68 10.04 -39.61 -0.40 -2.08 16 14 C -0.20 -3.60 10.04 -39.55 -0.40 -4.00 16 15 C -0.09 -1.52 10.04 -39.61 -0.40 -1.92 16 16 C -0.22 -4.27 9.90 -39.38 -0.39 -4.66 16 17 C -0.13 -2.60 4.31 -24.74 -0.11 -2.71 16 18 C -0.09 -1.52 6.58 -25.07 -0.17 -1.68 16 19 C -0.18 -2.90 6.85 -89.49 -0.61 -3.51 16 20 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 21 C -0.15 -2.52 9.51 -25.42 -0.24 -2.76 16 22 C -0.14 -2.56 4.06 -88.19 -0.36 -2.92 16 23 H 0.11 2.07 7.66 -51.93 -0.40 1.68 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.38 7.33 6.87 -40.82 -0.28 7.05 16 26 H 0.14 3.03 4.37 -52.48 -0.23 2.80 16 27 H 0.11 1.80 8.06 -52.48 -0.42 1.37 16 28 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 29 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.06 1.10 4.28 -51.93 -0.22 0.88 16 32 H 0.08 1.70 8.05 -51.93 -0.42 1.28 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.09 1.52 7.36 -51.93 -0.38 1.13 16 LS Contribution 276.10 15.07 4.16 4.16 Total: -1.00 -27.98 276.10 -8.46 -36.44 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -4.99 Total: 12.84 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: -4.23 Total: -30.17 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.64 Total: -40.34 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.04 Total: 17.07 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.98 -8.46 -36.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260520450.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.945 kcal (2) G-P(sol) polarization free energy of solvation -27.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds