Wall clock time and date at job start Mon Mar 30 2020 05:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00430 * 2 1 4 4 H 1.48501 * 109.46716 * 265.23622 * 3 2 1 5 5 H 1.48495 * 109.47023 * 25.23685 * 3 2 1 6 6 H 1.48493 * 109.47111 * 145.23934 * 3 2 1 7 7 C 1.37878 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99464 * 6.27768 * 7 2 1 9 9 C 1.50698 * 120.00578 * 186.27386 * 7 2 1 10 10 N 1.46497 * 110.43171 * 63.51129 * 9 7 2 11 11 C 1.39679 * 120.00034 * 59.71935 * 10 9 7 12 12 C 1.38906 * 120.07443 * 4.06202 * 11 10 9 13 13 C 1.38106 * 119.92566 * 179.76915 * 12 11 10 14 14 C 1.38285 * 120.07237 * 0.50937 * 13 12 11 15 15 C 1.38288 * 120.15092 * 359.74819 * 14 13 12 16 16 C 1.38104 * 120.07383 * 359.97438 * 15 14 13 17 17 C 1.54888 * 110.48314 * 300.97402 * 9 7 2 18 18 C 1.54896 * 102.74478 * 203.37550 * 17 9 7 19 19 C 1.54265 * 104.19712 * 37.94438 * 18 17 9 20 20 H 1.08996 * 117.41481 * 116.36842 * 19 18 17 21 21 C 1.53006 * 118.19684 * 271.00086 * 19 18 17 22 22 C 1.53886 * 106.59572 * 336.38727 * 19 18 17 23 23 H 1.09000 * 121.32476 * 137.49822 * 22 19 18 24 24 H 0.97003 * 119.99554 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00474 * 239.71744 * 10 9 7 26 26 H 1.08004 * 120.03941 * 0.02562 * 12 11 10 27 27 H 1.08003 * 119.96448 * 180.25625 * 13 12 11 28 28 H 1.07995 * 119.92768 * 179.72068 * 14 13 12 29 29 H 1.08002 * 119.96783 * 180.02562 * 15 14 13 30 30 H 1.07998 * 120.04201 * 179.97438 * 16 15 14 31 31 H 1.08997 * 110.76091 * 85.06492 * 17 9 7 32 32 H 1.08994 * 110.91488 * 321.76039 * 17 9 7 33 33 H 1.09001 * 110.48448 * 279.26348 * 18 17 9 34 34 H 1.08999 * 110.48739 * 156.61880 * 18 17 9 35 35 H 1.09003 * 117.46003 * 202.14761 * 21 19 18 36 36 H 1.09004 * 117.45957 * 346.95287 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.5975 1.9881 -1.3953 5 1 1.4001 2.6796 0.5969 6 1 3.4928 1.4712 0.7982 7 6 2.0045 -1.1941 0.0005 8 1 1.4693 -2.1266 -0.1013 9 6 3.5047 -1.1981 0.1431 10 7 3.8960 -0.6546 1.4461 11 6 3.4535 -1.2683 2.6202 12 6 2.7130 -2.4418 2.5559 13 6 2.2811 -3.0486 3.7189 14 6 2.5761 -2.4836 4.9461 15 6 3.3086 -1.3126 5.0135 16 6 3.7485 -0.7037 3.8547 17 6 4.1602 -0.3865 -1.0017 18 6 5.5898 -0.9793 -1.0658 19 6 5.3863 -2.4864 -0.8074 20 1 5.6501 -3.1735 -1.6113 21 6 5.4132 -2.9819 0.6400 22 6 4.0605 -2.6255 -0.0386 23 1 3.3437 -3.4096 -0.2824 24 1 -0.4849 0.8401 -0.0004 25 1 4.4625 0.1314 1.4935 26 1 2.4787 -2.8814 1.5976 27 1 1.7087 -3.9632 3.6697 28 1 2.2333 -2.9576 5.8538 29 1 3.5377 -0.8741 5.9736 30 1 4.3201 0.2110 3.9079 31 1 4.1928 0.6744 -0.7537 32 1 3.6335 -0.5457 -1.9426 33 1 6.2195 -0.5410 -0.2915 34 1 6.0263 -0.8168 -2.0512 35 1 5.6394 -4.0350 0.8067 36 1 5.7874 -2.2953 1.3994 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260520450.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:41 Heat of formation + Delta-G solvation = 56.999595 kcal Electronic energy + Delta-G solvation = -18132.189497 eV Core-core repulsion = 15581.718706 eV Total energy + Delta-G solvation = -2550.470791 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.15563 -39.22778 -35.65935 -34.27855 -32.39629 -31.57042 -29.94844 -28.59083 -25.34838 -24.00657 -23.04898 -22.51675 -20.95520 -20.15548 -18.99771 -17.81801 -17.10277 -16.67712 -16.30234 -15.85383 -15.18803 -14.85240 -14.58043 -14.06462 -14.01549 -13.88717 -13.73984 -13.25837 -12.88467 -12.79036 -12.47222 -12.16040 -12.04676 -11.79123 -11.61177 -11.44935 -11.04904 -10.79059 -10.70248 -10.52390 -10.28876 -9.53013 -8.29435 -7.87682 -6.32865 0.82547 1.05654 1.30421 1.31703 1.43117 2.33529 2.72651 3.01589 3.26480 3.33543 3.75007 3.99035 4.11137 4.28742 4.37769 4.44366 4.57790 4.58972 4.63271 4.77726 4.79081 4.88182 4.97021 5.03521 5.11917 5.16306 5.19422 5.31963 5.40223 5.46408 5.52828 5.69170 5.84069 5.87826 6.00536 6.15749 6.40679 6.69591 6.91118 7.31358 7.37408 8.86641 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.013044 C = 0.009575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.268225 B = 2146.132125 C = 2923.620436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.027 3.973 3 Si 0.945 3.055 4 H -0.274 1.274 5 H -0.319 1.319 6 H -0.226 1.226 7 C -0.500 4.500 8 H 0.031 0.969 9 C 0.294 3.706 10 N -0.728 5.728 11 C 0.230 3.770 12 C -0.184 4.184 13 C -0.100 4.100 14 C -0.201 4.201 15 C -0.085 4.085 16 C -0.229 4.229 17 C -0.137 4.137 18 C -0.085 4.085 19 C -0.158 4.158 20 H 0.119 0.881 21 C -0.135 4.135 22 C -0.167 4.167 23 H 0.085 0.915 24 H 0.261 0.739 25 H 0.385 0.615 26 H 0.112 0.888 27 H 0.119 0.881 28 H 0.132 0.868 29 H 0.139 0.861 30 H 0.122 0.878 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.581 -1.953 3.788 13.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.171 4.171 3 Si 0.773 3.227 4 H -0.200 1.200 5 H -0.248 1.248 6 H -0.149 1.149 7 C -0.538 4.538 8 H 0.049 0.951 9 C 0.210 3.790 10 N -0.356 5.356 11 C 0.124 3.876 12 C -0.206 4.206 13 C -0.119 4.119 14 C -0.221 4.221 15 C -0.103 4.103 16 C -0.252 4.252 17 C -0.175 4.175 18 C -0.122 4.122 19 C -0.177 4.177 20 H 0.137 0.863 21 C -0.172 4.172 22 C -0.186 4.186 23 H 0.103 0.897 24 H 0.069 0.931 25 H 0.220 0.780 26 H 0.130 0.870 27 H 0.137 0.863 28 H 0.150 0.850 29 H 0.157 0.843 30 H 0.140 0.860 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.380 -1.938 3.558 13.026 hybrid contribution -0.615 0.994 -0.289 1.204 sum 11.765 -0.944 3.268 12.247 Atomic orbital electron populations 1.70091 1.08462 1.27643 1.52082 1.25732 0.95009 1.02830 0.93552 0.86156 0.79461 0.78491 0.78575 1.19992 1.24832 1.14925 1.21242 0.91397 0.92566 1.48626 0.95061 1.18444 0.91201 0.88952 0.80442 1.45704 1.54619 1.31934 1.03318 1.17888 0.91744 0.91242 0.86682 1.20960 1.03407 0.97472 0.98768 1.21110 0.98509 0.99546 0.92728 1.20987 1.04963 0.98831 0.97315 1.21020 0.96462 0.95073 0.97749 1.20770 1.09779 1.03101 0.91534 1.23176 0.96689 0.98368 0.99267 1.21935 0.95173 0.92743 1.02384 1.23339 1.01604 0.97477 0.95239 0.86327 1.23228 0.98227 1.01187 0.94530 1.23776 0.89598 0.98276 1.06991 0.89729 0.93052 0.77968 0.87037 0.86324 0.85049 0.84303 0.85993 0.92540 0.91179 0.91060 0.89611 0.88022 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.76 13.96 21.45 0.30 -58.46 16 2 C 0.03 1.54 5.46 84.65 0.46 2.00 16 3 Si 0.94 43.79 23.78 68.60 1.63 45.42 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.32 -15.67 7.11 99.48 0.71 -14.96 16 6 H -0.23 -9.03 4.43 99.48 0.44 -8.59 16 7 C -0.50 -26.94 6.77 25.60 0.17 -26.76 16 8 H 0.03 1.92 7.48 -2.91 -0.02 1.90 16 9 C 0.29 12.39 0.22 3.93 0.00 12.39 16 10 N -0.73 -28.79 2.89 -297.95 -0.86 -29.65 16 11 C 0.23 9.35 5.81 38.21 0.22 9.57 16 12 C -0.18 -7.87 8.04 22.40 0.18 -7.69 16 13 C -0.10 -3.77 10.04 22.25 0.22 -3.55 16 14 C -0.20 -6.62 10.04 22.29 0.22 -6.39 16 15 C -0.08 -2.70 10.04 22.25 0.22 -2.48 16 16 C -0.23 -8.15 9.90 22.40 0.22 -7.93 16 17 C -0.14 -5.12 4.31 31.89 0.14 -4.98 16 18 C -0.09 -2.45 6.58 31.67 0.21 -2.24 16 19 C -0.16 -4.72 6.85 -10.06 -0.07 -4.78 16 20 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 21 C -0.13 -4.13 9.51 31.45 0.30 -3.83 16 22 C -0.17 -6.28 4.06 -9.22 -0.04 -6.31 16 23 H 0.08 3.49 7.66 -2.39 -0.02 3.48 16 24 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 25 H 0.38 13.90 6.87 -92.71 -0.64 13.26 16 26 H 0.11 5.28 4.37 -2.91 -0.01 5.26 16 27 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 28 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 29 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 30 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 31 H 0.06 2.09 4.28 -2.39 -0.01 2.07 16 32 H 0.07 2.79 8.05 -2.39 -0.02 2.77 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 35 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.09 2.71 7.36 -2.39 -0.02 2.69 16 Total: -1.00 -63.77 276.10 3.72 -60.05 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: 0.18 Total: 35.62 kcal Atomic # 6 Polarization: -55.45 SS G_CDS: 2.47 Total: -52.98 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -0.56 Total: -88.11 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.63 Total: 45.42 kcal Total: -63.77 3.72 -60.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260520450.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.052 kcal (2) G-P(sol) polarization free energy of solvation -63.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds