Wall clock time and date at job start Mon Mar 30 2020 05:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86805 * 119.99974 * 2 1 4 4 H 1.48501 * 109.47095 * 269.99585 * 3 2 1 5 5 H 1.48498 * 109.46918 * 29.99879 * 3 2 1 6 6 H 1.48506 * 109.47146 * 149.99817 * 3 2 1 7 7 C 1.37878 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99994 * 173.95291 * 7 2 1 9 9 C 1.50698 * 120.00143 * 353.94533 * 7 2 1 10 10 N 1.46494 * 110.43243 * 56.84538 * 9 7 2 11 11 C 1.39669 * 120.00228 * 62.79236 * 10 9 7 12 12 C 1.38905 * 120.07847 * 174.14725 * 11 10 9 13 13 C 1.38106 * 119.92963 * 180.02562 * 12 11 10 14 14 C 1.38285 * 120.07338 * 359.97438 * 13 12 11 15 15 C 1.38296 * 120.14748 * 0.02562 * 14 13 12 16 16 C 1.38101 * 120.07538 * 359.97438 * 15 14 13 17 17 C 1.54892 * 110.59874 * 294.22721 * 9 7 2 18 18 C 1.54885 * 102.75127 * 203.32095 * 17 9 7 19 19 C 1.54266 * 104.19305 * 37.94571 * 18 17 9 20 20 H 1.08998 * 117.75997 * 196.03379 * 19 18 17 21 21 C 1.55469 * 118.30366 * 39.97425 * 19 18 17 22 22 C 1.53005 * 59.83981 * 266.70665 * 21 19 18 23 23 H 1.08999 * 119.29461 * 248.28773 * 22 21 19 24 24 H 0.97004 * 120.00506 * 5.03165 * 1 2 3 25 25 H 0.97004 * 120.00319 * 242.78895 * 10 9 7 26 26 H 1.08000 * 120.03834 * 0.28036 * 12 11 10 27 27 H 1.08000 * 119.97046 * 180.02562 * 13 12 11 28 28 H 1.07999 * 119.93412 * 180.02562 * 14 13 12 29 29 H 1.07994 * 119.95888 * 179.97438 * 15 14 13 30 30 H 1.07998 * 120.03761 * 179.97438 * 16 15 14 31 31 H 1.08997 * 110.75881 * 321.63784 * 17 9 7 32 32 H 1.09000 * 110.75373 * 85.00433 * 17 9 7 33 33 H 1.09004 * 110.48992 * 279.26737 * 18 17 9 34 34 H 1.09002 * 110.60054 * 156.67598 * 18 17 9 35 35 H 1.08998 * 117.18179 * 159.18160 * 21 19 18 36 36 H 1.08995 * 118.05828 * 13.84254 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0800 -1.1967 -0.0980 9 6 1.2573 -2.4955 0.1388 10 7 0.2504 -2.6218 -0.9177 11 6 0.6454 -2.6730 -2.2564 12 6 -0.2941 -2.9144 -3.2507 13 6 0.0999 -2.9649 -4.5734 14 6 1.4280 -2.7749 -4.9086 15 6 2.3660 -2.5344 -3.9212 16 6 1.9787 -2.4826 -2.5966 17 6 0.5941 -2.5974 1.5348 18 6 0.4296 -4.1258 1.7243 19 6 1.7099 -4.7237 1.1052 20 1 1.7133 -5.7893 0.8762 21 6 3.0590 -3.9910 1.3507 22 6 2.2361 -3.6870 0.0971 23 1 2.6188 -3.9883 -0.8781 24 1 -0.4851 0.8368 -0.0737 25 1 -0.6907 -2.6700 -0.6876 26 1 -1.3322 -3.0584 -2.9901 27 1 -0.6300 -3.1521 -5.3470 28 1 1.7336 -2.8145 -5.9437 29 1 3.4024 -2.3868 -4.1863 30 1 2.7118 -2.2951 -1.8259 31 1 1.2452 -2.1808 2.3032 32 1 -0.3763 -2.1011 1.5386 33 1 -0.4533 -4.4832 1.1943 34 1 0.3651 -4.3762 2.7832 35 1 3.9719 -4.5728 1.2239 36 1 3.0934 -3.2265 2.1269 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260520472.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:44 Heat of formation + Delta-G solvation = 57.010285 kcal Electronic energy + Delta-G solvation = -17968.677014 eV Core-core repulsion = 15418.206687 eV Total energy + Delta-G solvation = -2550.470328 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.33903 -37.71459 -34.00725 -32.14477 -30.12370 -29.91799 -28.08801 -26.61398 -23.76827 -22.74576 -21.34205 -20.68127 -18.96835 -18.47970 -16.79623 -15.89555 -15.63862 -14.92153 -14.56354 -13.84853 -13.60636 -13.09348 -12.77194 -12.62255 -12.34312 -11.91190 -11.68131 -11.54109 -11.10217 -10.88177 -10.71371 -10.64557 -10.22190 -10.16367 -9.98080 -9.88341 -9.39269 -9.34220 -8.99245 -8.56407 -8.40802 -7.94035 -6.28449 -5.85575 -4.15511 2.42699 2.69703 3.26857 3.34435 3.36933 4.32786 4.42423 4.78670 4.95302 5.31789 5.42750 5.56634 5.79838 5.83066 5.84906 5.89010 6.11830 6.16628 6.28977 6.36083 6.39375 6.47963 6.60648 6.66556 6.74375 6.81172 6.89666 7.00012 7.09475 7.21929 7.35880 7.43151 7.56896 7.60072 7.78900 7.96761 8.18805 8.67705 8.94979 9.18881 9.51602 10.95771 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.015520 B = 0.012738 C = 0.008783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.661849 B = 2197.675117 C = 3187.374163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.082 3.918 3 Si 0.884 3.116 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.324 3.676 10 N -0.687 5.687 11 C 0.263 3.737 12 C -0.228 4.228 13 C -0.081 4.081 14 C -0.217 4.217 15 C -0.088 4.088 16 C -0.186 4.186 17 C -0.108 4.108 18 C -0.097 4.097 19 C -0.187 4.187 20 H 0.092 0.908 21 C -0.151 4.151 22 C -0.149 4.149 23 H 0.099 0.901 24 H 0.260 0.740 25 H 0.382 0.618 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.141 0.859 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 -6.123 -0.875 6.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.123 4.123 3 Si 0.712 3.288 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.079 0.921 9 C 0.240 3.760 10 N -0.307 5.307 11 C 0.152 3.848 12 C -0.252 4.252 13 C -0.100 4.100 14 C -0.238 4.238 15 C -0.107 4.107 16 C -0.208 4.208 17 C -0.147 4.147 18 C -0.134 4.134 19 C -0.205 4.205 20 H 0.110 0.890 21 C -0.189 4.189 22 C -0.168 4.168 23 H 0.117 0.883 24 H 0.070 0.930 25 H 0.216 0.784 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.159 0.841 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.003 -5.972 -0.590 6.084 hybrid contribution 0.021 1.052 -0.159 1.064 sum 1.024 -4.920 -0.748 5.081 Atomic orbital electron populations 1.69904 1.05885 1.26791 1.48125 1.24893 0.94709 0.98815 0.93878 0.86705 0.80067 0.83746 0.78268 1.20595 1.21346 1.19775 1.21178 0.93339 0.89851 1.51700 0.92111 1.18103 0.83991 0.90139 0.83800 1.45147 1.08098 1.75622 1.01792 1.17766 0.92708 0.89240 0.85094 1.20439 0.98215 1.13707 0.92817 1.20559 0.95418 0.98990 0.95036 1.20523 0.93777 1.11618 0.97904 1.20817 0.98084 0.98643 0.93158 1.21175 0.96140 1.07125 0.96379 1.22598 1.01645 0.92166 0.98286 1.21971 0.95265 0.97562 0.98627 1.23441 0.93903 0.96301 1.06862 0.88961 1.23092 0.92743 1.02111 1.00953 1.23737 1.01230 0.98429 0.93447 0.88265 0.93039 0.78434 0.87894 0.88065 0.88358 0.87904 0.84138 0.91635 0.90948 0.92296 0.93223 0.89853 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.88 11.84 55.43 0.66 -22.22 16 2 C 0.08 2.11 5.27 -17.82 -0.09 2.02 16 3 Si 0.88 20.61 29.55 -169.99 -5.02 15.59 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -12.94 5.81 -34.44 -0.20 -13.14 16 8 H 0.06 1.54 7.48 -52.48 -0.39 1.15 16 9 C 0.32 7.11 0.25 -131.32 -0.03 7.07 16 10 N -0.69 -15.08 4.28 -45.53 -0.19 -15.28 16 11 C 0.26 5.76 6.27 -83.79 -0.53 5.23 16 12 C -0.23 -4.61 9.90 -39.38 -0.39 -5.00 16 13 C -0.08 -1.51 10.04 -39.61 -0.40 -1.91 16 14 C -0.22 -4.02 10.04 -39.54 -0.40 -4.42 16 15 C -0.09 -1.72 10.04 -39.61 -0.40 -2.12 16 16 C -0.19 -4.04 7.41 -39.38 -0.29 -4.33 16 17 C -0.11 -2.25 4.91 -24.74 -0.12 -2.37 16 18 C -0.10 -1.71 6.74 -25.07 -0.17 -1.88 16 19 C -0.19 -3.29 7.16 -88.19 -0.63 -3.92 16 20 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 21 C -0.15 -2.66 9.94 -25.42 -0.25 -2.91 16 22 C -0.15 -2.96 4.84 -89.50 -0.43 -3.39 16 23 H 0.10 2.03 6.18 -51.93 -0.32 1.71 16 24 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 25 H 0.38 8.31 8.49 -40.82 -0.35 7.96 16 26 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 27 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 29 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.14 3.20 4.35 -52.49 -0.23 2.98 16 31 H 0.06 1.40 7.32 -51.93 -0.38 1.02 16 32 H 0.07 1.61 7.68 -51.93 -0.40 1.21 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.68 7.27 -51.93 -0.38 1.31 16 LS Contribution 287.49 15.07 4.33 4.33 Total: -1.00 -25.81 287.49 -9.52 -35.34 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -4.96 Total: 13.30 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: -4.33 Total: -31.06 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.46 Total: -37.50 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -25.81 -9.52 -35.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260520472.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.346 kcal (2) G-P(sol) polarization free energy of solvation -25.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds