Wall clock time and date at job start Mon Mar 30 2020 05:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86805 * 119.99974 * 2 1 4 4 H 1.48501 * 109.47095 * 269.99585 * 3 2 1 5 5 H 1.48498 * 109.46918 * 29.99879 * 3 2 1 6 6 H 1.48506 * 109.47146 * 149.99817 * 3 2 1 7 7 C 1.37878 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99994 * 173.95291 * 7 2 1 9 9 C 1.50698 * 120.00143 * 353.94533 * 7 2 1 10 10 N 1.46494 * 110.43243 * 56.84538 * 9 7 2 11 11 C 1.39669 * 120.00228 * 62.79236 * 10 9 7 12 12 C 1.38905 * 120.07847 * 174.14725 * 11 10 9 13 13 C 1.38106 * 119.92963 * 180.02562 * 12 11 10 14 14 C 1.38285 * 120.07338 * 359.97438 * 13 12 11 15 15 C 1.38296 * 120.14748 * 0.02562 * 14 13 12 16 16 C 1.38101 * 120.07538 * 359.97438 * 15 14 13 17 17 C 1.54892 * 110.59874 * 294.22721 * 9 7 2 18 18 C 1.54885 * 102.75127 * 203.32095 * 17 9 7 19 19 C 1.54266 * 104.19305 * 37.94571 * 18 17 9 20 20 H 1.08998 * 117.75997 * 196.03379 * 19 18 17 21 21 C 1.55469 * 118.30366 * 39.97425 * 19 18 17 22 22 C 1.53005 * 59.83981 * 266.70665 * 21 19 18 23 23 H 1.08999 * 119.29461 * 248.28773 * 22 21 19 24 24 H 0.97004 * 120.00506 * 5.03165 * 1 2 3 25 25 H 0.97004 * 120.00319 * 242.78895 * 10 9 7 26 26 H 1.08000 * 120.03834 * 0.28036 * 12 11 10 27 27 H 1.08000 * 119.97046 * 180.02562 * 13 12 11 28 28 H 1.07999 * 119.93412 * 180.02562 * 14 13 12 29 29 H 1.07994 * 119.95888 * 179.97438 * 15 14 13 30 30 H 1.07998 * 120.03761 * 179.97438 * 16 15 14 31 31 H 1.08997 * 110.75881 * 321.63784 * 17 9 7 32 32 H 1.09000 * 110.75373 * 85.00433 * 17 9 7 33 33 H 1.09004 * 110.48992 * 279.26737 * 18 17 9 34 34 H 1.09002 * 110.60054 * 156.67598 * 18 17 9 35 35 H 1.08998 * 117.18179 * 159.18160 * 21 19 18 36 36 H 1.08995 * 118.05828 * 13.84254 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0800 -1.1967 -0.0980 9 6 1.2573 -2.4955 0.1388 10 7 0.2504 -2.6218 -0.9177 11 6 0.6454 -2.6730 -2.2564 12 6 -0.2941 -2.9144 -3.2507 13 6 0.0999 -2.9649 -4.5734 14 6 1.4280 -2.7749 -4.9086 15 6 2.3660 -2.5344 -3.9212 16 6 1.9787 -2.4826 -2.5966 17 6 0.5941 -2.5974 1.5348 18 6 0.4296 -4.1258 1.7243 19 6 1.7099 -4.7237 1.1052 20 1 1.7133 -5.7893 0.8762 21 6 3.0590 -3.9910 1.3507 22 6 2.2361 -3.6870 0.0971 23 1 2.6188 -3.9883 -0.8781 24 1 -0.4851 0.8368 -0.0737 25 1 -0.6907 -2.6700 -0.6876 26 1 -1.3322 -3.0584 -2.9901 27 1 -0.6300 -3.1521 -5.3470 28 1 1.7336 -2.8145 -5.9437 29 1 3.4024 -2.3868 -4.1863 30 1 2.7118 -2.2951 -1.8259 31 1 1.2452 -2.1808 2.3032 32 1 -0.3763 -2.1011 1.5386 33 1 -0.4533 -4.4832 1.1943 34 1 0.3651 -4.3762 2.7832 35 1 3.9719 -4.5728 1.2239 36 1 3.0934 -3.2265 2.1269 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260520472.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:44 Heat of formation + Delta-G solvation = 45.425091 kcal Electronic energy + Delta-G solvation = -17969.179386 eV Core-core repulsion = 15418.206687 eV Total energy + Delta-G solvation = -2550.972699 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.90631 -39.23544 -35.64817 -33.97931 -31.66887 -31.48155 -29.68955 -28.31561 -25.52579 -24.28405 -22.86835 -22.22204 -20.45066 -20.14144 -18.52688 -17.56001 -17.19353 -16.48383 -16.41778 -15.39874 -15.19187 -14.75006 -14.32700 -14.14777 -13.87789 -13.55323 -13.26256 -13.12903 -12.94246 -12.70835 -12.44480 -12.21754 -11.82997 -11.78645 -11.58952 -11.43850 -11.10450 -10.84519 -10.54767 -10.44489 -10.02773 -9.48777 -8.15775 -7.56810 -6.12274 0.87178 1.15733 1.37179 1.42077 1.47585 2.43940 2.87571 3.11524 3.38026 3.49955 3.94196 4.07251 4.34131 4.38465 4.41949 4.44727 4.60475 4.67240 4.83714 4.90362 4.94684 5.00474 5.06119 5.11223 5.22898 5.26682 5.44792 5.48034 5.50922 5.62996 5.68212 5.81326 5.91335 5.98236 6.05062 6.29141 6.47269 6.80514 7.20949 7.49117 7.58596 8.98284 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.015520 B = 0.012738 C = 0.008783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.661849 B = 2197.675117 C = 3187.374163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.042 3.958 3 Si 0.927 3.073 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.520 4.520 8 H 0.047 0.953 9 C 0.320 3.680 10 N -0.691 5.691 11 C 0.239 3.761 12 C -0.240 4.240 13 C -0.080 4.080 14 C -0.215 4.215 15 C -0.094 4.094 16 C -0.209 4.209 17 C -0.105 4.105 18 C -0.089 4.089 19 C -0.170 4.170 20 H 0.114 0.886 21 C -0.143 4.143 22 C -0.172 4.172 23 H 0.090 0.910 24 H 0.254 0.746 25 H 0.379 0.621 26 H 0.112 0.888 27 H 0.134 0.866 28 H 0.130 0.870 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.340 -7.408 -1.677 7.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.160 4.160 3 Si 0.755 3.245 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.559 4.559 8 H 0.065 0.935 9 C 0.235 3.765 10 N -0.311 5.311 11 C 0.130 3.870 12 C -0.264 4.264 13 C -0.099 4.099 14 C -0.236 4.236 15 C -0.113 4.113 16 C -0.231 4.231 17 C -0.143 4.143 18 C -0.126 4.126 19 C -0.188 4.188 20 H 0.132 0.868 21 C -0.180 4.180 22 C -0.191 4.191 23 H 0.108 0.892 24 H 0.063 0.937 25 H 0.212 0.788 26 H 0.130 0.870 27 H 0.152 0.848 28 H 0.148 0.852 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.314 -7.260 -1.397 7.509 hybrid contribution -0.036 1.436 0.005 1.436 sum 1.278 -5.824 -1.392 6.123 Atomic orbital electron populations 1.69994 1.06452 1.26572 1.49731 1.25380 0.95301 1.00799 0.94499 0.86040 0.79391 0.81566 0.77526 1.21487 1.21432 1.19351 1.21411 0.92854 0.91440 1.50225 0.93525 1.18080 0.84433 0.89760 0.84223 1.44988 1.07736 1.76372 1.02018 1.18036 0.93307 0.90297 0.85394 1.20695 0.98463 1.13810 0.93429 1.20973 0.96358 0.97522 0.95050 1.20924 0.93493 1.09946 0.99195 1.21121 0.99625 0.97993 0.92555 1.21137 0.95914 1.08978 0.97112 1.22441 0.99965 0.94503 0.97414 1.21907 0.95685 0.94849 1.00160 1.23546 0.93614 0.96876 1.04737 0.86793 1.23185 0.93852 1.01915 0.99048 1.23561 1.02689 0.98788 0.94053 0.89215 0.93673 0.78802 0.87031 0.84789 0.85189 0.85883 0.86002 0.92859 0.93086 0.91738 0.91052 0.87362 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.85 11.84 21.45 0.25 -47.59 16 2 C 0.04 2.22 5.27 84.66 0.45 2.66 16 3 Si 0.93 43.05 29.55 68.60 2.03 45.07 16 4 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.52 -26.36 5.81 25.60 0.15 -26.21 16 8 H 0.05 2.43 7.48 -2.91 -0.02 2.41 16 9 C 0.32 14.20 0.25 3.93 0.00 14.20 16 10 N -0.69 -30.78 4.28 -297.95 -1.28 -32.05 16 11 C 0.24 10.51 6.27 38.21 0.24 10.75 16 12 C -0.24 -9.48 9.90 22.40 0.22 -9.26 16 13 C -0.08 -2.78 10.04 22.25 0.22 -2.55 16 14 C -0.22 -7.34 10.04 22.29 0.22 -7.12 16 15 C -0.09 -3.55 10.04 22.25 0.22 -3.33 16 16 C -0.21 -9.11 7.41 22.40 0.17 -8.95 16 17 C -0.10 -4.37 4.91 31.88 0.16 -4.22 16 18 C -0.09 -2.99 6.74 31.67 0.21 -2.78 16 19 C -0.17 -5.62 7.16 -9.22 -0.07 -5.68 16 20 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 21 C -0.14 -4.78 9.94 31.45 0.31 -4.47 16 22 C -0.17 -6.73 4.84 -10.07 -0.05 -6.78 16 23 H 0.09 3.68 6.18 -2.39 -0.01 3.67 16 24 H 0.25 13.51 8.32 -92.71 -0.77 12.74 16 25 H 0.38 16.83 8.49 -92.71 -0.79 16.04 16 26 H 0.11 4.09 8.06 -2.91 -0.02 4.07 16 27 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 28 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 29 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 30 H 0.12 5.71 4.35 -2.91 -0.01 5.69 16 31 H 0.05 2.30 7.32 -2.39 -0.02 2.29 16 32 H 0.05 2.32 7.68 -2.39 -0.02 2.30 16 33 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.08 2.96 7.27 -2.39 -0.02 2.94 16 Total: -1.00 -55.16 287.49 3.76 -51.40 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: 0.29 Total: 36.90 kcal Atomic # 6 Polarization: -56.20 SS G_CDS: 2.46 Total: -53.73 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -1.02 Total: -79.65 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -55.16 3.76 -51.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260520472.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.830 kcal (2) G-P(sol) polarization free energy of solvation -55.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds