Wall clock time and date at job start Mon Mar 30 2020 05:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48501 * 109.47135 * 274.69495 * 3 2 1 5 5 H 1.48499 * 109.47076 * 34.69307 * 3 2 1 6 6 H 1.48499 * 109.46866 * 154.69325 * 3 2 1 7 7 C 1.39922 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99908 * 197.93266 * 7 2 1 9 9 C 1.41410 * 120.00321 * 17.92900 * 7 2 1 10 10 C 1.40779 * 120.12954 * 24.55042 * 9 7 2 11 11 C 1.37650 * 119.63702 * 179.74954 * 10 9 7 12 12 C 1.38391 * 120.40645 * 0.02562 * 11 10 9 13 13 C 1.39419 * 120.87305 * 0.30465 * 12 11 10 14 14 C 1.38805 * 119.35292 * 359.57419 * 13 12 11 15 15 N 1.40097 * 110.89899 * 179.56684 * 13 12 11 16 16 C 1.46904 * 110.99684 * 256.35140 * 15 13 12 17 17 C 1.53006 * 109.46692 * 189.89651 * 16 15 13 18 18 C 1.52994 * 117.49937 * 243.74389 * 17 16 15 19 19 C 1.52998 * 117.49644 * 175.08503 * 17 16 15 20 20 C 1.47877 * 107.91794 * 18.18813 * 15 13 12 21 21 C 1.51660 * 131.28711 * 180.32431 * 12 11 10 22 22 H 0.96995 * 119.99749 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.18081 * 359.76840 * 10 9 7 24 24 H 1.08000 * 119.79677 * 180.02562 * 11 10 9 25 25 H 1.07996 * 120.00913 * 180.26800 * 14 13 12 26 26 H 1.08993 * 109.47515 * 69.89925 * 16 15 13 27 27 H 1.09001 * 109.46956 * 309.89272 * 16 15 13 28 28 H 1.09001 * 115.54990 * 29.41592 * 17 16 15 29 29 H 1.09010 * 117.49972 * 0.02562 * 18 17 16 30 30 H 1.09000 * 117.50043 * 145.02131 * 18 17 16 31 31 H 1.08999 * 117.49924 * 214.98113 * 19 17 16 32 32 H 1.09002 * 117.50082 * 359.97438 * 19 17 16 33 33 H 1.08997 * 110.76130 * 90.98585 * 20 15 13 34 34 H 1.08998 * 110.76588 * 214.19381 * 20 15 13 35 35 H 1.08999 * 110.74042 * 45.39093 * 21 12 11 36 36 H 1.08993 * 110.74084 * 282.06163 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3906 2.1038 -1.3954 5 1 1.4929 2.6220 0.7969 6 1 3.5859 1.4136 0.5985 7 6 2.0080 -1.2117 -0.0005 8 1 3.0486 -1.2346 0.2874 9 6 1.3525 -2.4065 -0.3781 10 6 0.2240 -2.3583 -1.2182 11 6 -0.4031 -3.5279 -1.5836 12 6 0.0689 -4.7471 -1.1297 13 6 1.1808 -4.8166 -0.2915 14 6 1.8248 -3.6455 0.0831 15 7 1.4695 -6.1452 0.0465 16 6 1.0325 -6.4468 1.4163 17 6 1.5785 -7.8129 1.8366 18 6 0.5636 -8.9199 2.1286 19 6 1.3291 -8.2602 3.2783 20 6 0.7897 -7.0215 -0.9316 21 6 -0.4160 -6.1627 -1.3767 22 1 -0.4849 0.8400 0.0004 23 1 -0.1475 -1.4089 -1.5744 24 1 -1.2689 -3.4939 -2.2283 25 1 2.6897 -3.6873 0.7285 26 1 -0.0566 -6.4633 1.4549 27 1 1.4087 -5.6809 2.0945 28 1 2.5221 -8.1042 1.3753 29 1 -0.4932 -8.6750 2.0210 30 1 0.8396 -9.9395 1.8599 31 1 2.1086 -8.8461 3.7655 32 1 0.7765 -7.5810 3.9275 33 1 1.4434 -7.2374 -1.7766 34 1 0.4563 -7.9445 -0.4572 35 1 -0.6312 -6.3181 -2.4339 36 1 -1.2923 -6.3824 -0.7670 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260523626.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:33 Heat of formation + Delta-G solvation = 50.547137 kcal Electronic energy + Delta-G solvation = -16978.863094 eV Core-core repulsion = 14428.112504 eV Total energy + Delta-G solvation = -2550.750591 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.66273 -37.21522 -35.63171 -33.11125 -31.15984 -28.74287 -28.40644 -25.55629 -24.82755 -22.36348 -21.69150 -20.52943 -19.97646 -19.52641 -17.16576 -15.80595 -15.40487 -15.00719 -14.72922 -14.46054 -13.67503 -13.63921 -12.91031 -12.67282 -12.37141 -12.15428 -11.77856 -11.63825 -11.48122 -11.25442 -11.06033 -10.99544 -10.73237 -10.44168 -10.39373 -10.12365 -9.94359 -9.78895 -9.37668 -9.17065 -8.32633 -7.41211 -6.80817 -6.74112 -4.35164 2.73808 2.94501 3.07889 3.12120 3.18984 3.87372 3.93468 4.38837 4.58855 4.89917 5.01945 5.13100 5.41742 5.56185 5.61928 5.65517 5.71397 5.74657 5.91627 5.96246 6.10882 6.12958 6.16268 6.37292 6.37834 6.44243 6.53893 6.96250 7.04778 7.08274 7.17432 7.28187 7.55468 7.79319 7.94171 8.08303 8.14620 8.34882 8.65576 8.89804 8.97327 10.18573 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032828 B = 0.005714 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.724160 B = 4899.430411 C = 5431.907721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.461 4.461 8 H 0.079 0.921 9 C 0.121 3.879 10 C -0.170 4.170 11 C -0.075 4.075 12 C -0.260 4.260 13 C 0.100 3.900 14 C -0.206 4.206 15 N -0.490 5.490 16 C 0.091 3.909 17 C -0.140 4.140 18 C -0.187 4.187 19 C -0.180 4.180 20 C 0.052 3.948 21 C -0.088 4.088 22 H 0.280 0.720 23 H 0.121 0.879 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 -9.766 1.762 9.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.491 4.491 8 H 0.097 0.903 9 C 0.118 3.882 10 C -0.189 4.189 11 C -0.094 4.094 12 C -0.263 4.263 13 C 0.006 3.994 14 C -0.227 4.227 15 N -0.207 5.207 16 C -0.036 4.036 17 C -0.159 4.159 18 C -0.224 4.224 19 C -0.218 4.218 20 C -0.075 4.075 21 C -0.127 4.127 22 H 0.091 0.909 23 H 0.139 0.861 24 H 0.104 0.896 25 H 0.112 0.888 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.129 0.871 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.193 -9.729 1.800 9.896 hybrid contribution -0.575 0.873 0.052 1.047 sum -0.382 -8.856 1.852 9.055 Atomic orbital electron populations 1.69839 1.07595 1.29166 1.35322 1.25895 0.94702 1.01296 0.92201 0.86297 0.80624 0.80637 0.79154 1.19327 1.20330 1.18532 1.19565 0.98195 0.91086 1.40205 0.90323 1.17376 0.91024 0.91398 0.88413 1.21262 0.99761 0.96436 1.01456 1.19969 0.98384 0.91648 0.99426 1.20210 1.01309 0.93274 1.11507 1.19083 0.94463 0.87871 0.97967 1.20359 1.03858 0.90296 1.08207 1.60267 1.56095 1.02558 1.01817 1.21682 0.97105 0.94708 0.90056 1.22375 1.00399 0.95110 0.97985 1.23061 0.97708 0.97735 1.03913 1.22934 1.03397 1.03900 0.91524 1.23006 0.93978 0.95191 0.95358 1.21298 0.97414 0.93718 1.00230 0.90908 0.86135 0.89641 0.88824 0.94591 0.90346 0.87147 0.89094 0.89138 0.88956 0.88897 0.90605 0.91010 0.92042 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.51 10.96 55.55 0.61 -19.90 16 2 C 0.08 1.92 5.14 -17.35 -0.09 1.84 16 3 Si 0.91 18.67 29.60 -169.99 -5.03 13.63 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -12.28 9.04 -37.74 -0.34 -12.62 16 8 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 9 C 0.12 3.26 5.57 -106.92 -0.60 2.66 16 10 C -0.17 -4.45 8.71 -38.84 -0.34 -4.79 16 11 C -0.08 -1.81 10.01 -39.74 -0.40 -2.21 16 12 C -0.26 -5.93 6.25 -103.65 -0.65 -6.57 16 13 C 0.10 2.33 5.52 -83.43 -0.46 1.87 16 14 C -0.21 -5.22 9.81 -38.57 -0.38 -5.60 16 15 N -0.49 -9.55 5.04 -169.08 -0.85 -10.40 16 16 C 0.09 1.56 5.03 -3.82 -0.02 1.54 16 17 C -0.14 -1.92 5.02 -90.62 -0.45 -2.37 16 18 C -0.19 -2.15 9.81 -26.70 -0.26 -2.41 16 19 C -0.18 -2.09 10.25 -26.70 -0.27 -2.36 16 20 C 0.05 0.88 6.72 -2.45 -0.02 0.86 16 21 C -0.09 -1.62 6.93 -26.58 -0.18 -1.81 16 22 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 23 H 0.12 3.24 6.15 -52.49 -0.32 2.92 16 24 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 25 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 26 H 0.04 0.63 7.76 -51.93 -0.40 0.23 16 27 H 0.08 1.45 8.06 -51.93 -0.42 1.03 16 28 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.09 1.05 8.03 -51.92 -0.42 0.64 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.04 6.78 -51.93 -0.35 0.69 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 296.81 15.07 4.47 4.47 Total: -1.00 -27.43 296.81 -10.53 -37.96 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.27 Total: 6.20 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: -4.46 Total: -31.97 kcal Atomic # 7 Polarization: -30.05 SS G_CDS: -0.24 Total: -30.30 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.43 -10.53 -37.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523626.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.507 kcal (2) G-P(sol) polarization free energy of solvation -27.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds