Wall clock time and date at job start Mon Mar 30 2020 05:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48501 * 109.47135 * 274.69495 * 3 2 1 5 5 H 1.48499 * 109.47076 * 34.69307 * 3 2 1 6 6 H 1.48499 * 109.46866 * 154.69325 * 3 2 1 7 7 C 1.39922 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99908 * 197.93266 * 7 2 1 9 9 C 1.41410 * 120.00321 * 17.92900 * 7 2 1 10 10 C 1.40779 * 120.12954 * 24.55042 * 9 7 2 11 11 C 1.37650 * 119.63702 * 179.74954 * 10 9 7 12 12 C 1.38391 * 120.40645 * 0.02562 * 11 10 9 13 13 C 1.39419 * 120.87305 * 0.30465 * 12 11 10 14 14 C 1.38805 * 119.35292 * 359.57419 * 13 12 11 15 15 N 1.40097 * 110.89899 * 179.56684 * 13 12 11 16 16 C 1.46904 * 110.99684 * 256.35140 * 15 13 12 17 17 C 1.53006 * 109.46692 * 189.89651 * 16 15 13 18 18 C 1.52994 * 117.49937 * 243.74389 * 17 16 15 19 19 C 1.52998 * 117.49644 * 175.08503 * 17 16 15 20 20 C 1.47877 * 107.91794 * 18.18813 * 15 13 12 21 21 C 1.51660 * 131.28711 * 180.32431 * 12 11 10 22 22 H 0.96995 * 119.99749 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.18081 * 359.76840 * 10 9 7 24 24 H 1.08000 * 119.79677 * 180.02562 * 11 10 9 25 25 H 1.07996 * 120.00913 * 180.26800 * 14 13 12 26 26 H 1.08993 * 109.47515 * 69.89925 * 16 15 13 27 27 H 1.09001 * 109.46956 * 309.89272 * 16 15 13 28 28 H 1.09001 * 115.54990 * 29.41592 * 17 16 15 29 29 H 1.09010 * 117.49972 * 0.02562 * 18 17 16 30 30 H 1.09000 * 117.50043 * 145.02131 * 18 17 16 31 31 H 1.08999 * 117.49924 * 214.98113 * 19 17 16 32 32 H 1.09002 * 117.50082 * 359.97438 * 19 17 16 33 33 H 1.08997 * 110.76130 * 90.98585 * 20 15 13 34 34 H 1.08998 * 110.76588 * 214.19381 * 20 15 13 35 35 H 1.08999 * 110.74042 * 45.39093 * 21 12 11 36 36 H 1.08993 * 110.74084 * 282.06163 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3906 2.1038 -1.3954 5 1 1.4929 2.6220 0.7969 6 1 3.5859 1.4136 0.5985 7 6 2.0080 -1.2117 -0.0005 8 1 3.0486 -1.2346 0.2874 9 6 1.3525 -2.4065 -0.3781 10 6 0.2240 -2.3583 -1.2182 11 6 -0.4031 -3.5279 -1.5836 12 6 0.0689 -4.7471 -1.1297 13 6 1.1808 -4.8166 -0.2915 14 6 1.8248 -3.6455 0.0831 15 7 1.4695 -6.1452 0.0465 16 6 1.0325 -6.4468 1.4163 17 6 1.5785 -7.8129 1.8366 18 6 0.5636 -8.9199 2.1286 19 6 1.3291 -8.2602 3.2783 20 6 0.7897 -7.0215 -0.9316 21 6 -0.4160 -6.1627 -1.3767 22 1 -0.4849 0.8400 0.0004 23 1 -0.1475 -1.4089 -1.5744 24 1 -1.2689 -3.4939 -2.2283 25 1 2.6897 -3.6873 0.7285 26 1 -0.0566 -6.4633 1.4549 27 1 1.4087 -5.6809 2.0945 28 1 2.5221 -8.1042 1.3753 29 1 -0.4932 -8.6750 2.0210 30 1 0.8396 -9.9395 1.8599 31 1 2.1086 -8.8461 3.7655 32 1 0.7765 -7.5810 3.9275 33 1 1.4434 -7.2374 -1.7766 34 1 0.4563 -7.9445 -0.4572 35 1 -0.6312 -6.3181 -2.4339 36 1 -1.2923 -6.3824 -0.7670 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260523626.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:33 Heat of formation + Delta-G solvation = 36.954315 kcal Electronic energy + Delta-G solvation = -16979.452524 eV Core-core repulsion = 14428.112504 eV Total energy + Delta-G solvation = -2551.340020 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.27894 -38.52694 -37.23998 -34.95721 -32.83768 -30.46135 -30.19132 -27.08290 -26.60270 -23.45719 -23.11015 -22.04066 -21.84556 -20.90824 -19.01983 -17.22542 -17.09615 -16.61090 -16.13930 -16.02046 -15.36600 -14.99001 -14.45699 -14.26843 -14.05193 -13.75358 -13.51781 -13.21616 -12.86686 -12.69820 -12.44083 -12.37035 -12.30743 -12.07318 -11.96053 -11.78616 -11.30503 -11.18681 -11.00491 -10.85199 -10.01752 -9.35161 -8.66961 -8.55623 -6.36069 0.91083 1.01244 1.37917 1.50307 1.51929 2.20426 2.65017 2.83328 3.01292 3.65201 3.82523 3.97580 4.04313 4.06865 4.23427 4.32191 4.40400 4.49888 4.64906 4.76520 4.79438 4.80821 4.87761 5.01733 5.04135 5.07488 5.12657 5.22846 5.28485 5.32132 5.40329 5.48815 5.85588 5.92687 6.01794 6.16170 6.33998 6.46039 6.71300 6.92375 7.02612 8.31922 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032828 B = 0.005714 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.724160 B = 4899.430411 C = 5431.907721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.037 3.963 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.499 4.499 8 H 0.073 0.927 9 C 0.094 3.906 10 C -0.195 4.195 11 C -0.080 4.080 12 C -0.267 4.267 13 C 0.101 3.899 14 C -0.231 4.231 15 N -0.498 5.498 16 C 0.096 3.904 17 C -0.156 4.156 18 C -0.169 4.169 19 C -0.173 4.173 20 C 0.056 3.944 21 C -0.084 4.084 22 H 0.289 0.711 23 H 0.106 0.894 24 H 0.107 0.893 25 H 0.086 0.914 26 H 0.032 0.968 27 H 0.053 0.947 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.499 -11.624 1.758 11.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.177 4.177 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.529 4.529 8 H 0.091 0.909 9 C 0.091 3.909 10 C -0.215 4.215 11 C -0.099 4.099 12 C -0.270 4.270 13 C 0.006 3.994 14 C -0.253 4.253 15 N -0.216 5.216 16 C -0.030 4.030 17 C -0.175 4.175 18 C -0.206 4.206 19 C -0.211 4.211 20 C -0.071 4.071 21 C -0.122 4.122 22 H 0.100 0.900 23 H 0.124 0.876 24 H 0.125 0.875 25 H 0.104 0.896 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.128 0.872 29 H 0.111 0.889 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.153 -11.620 1.799 11.760 hybrid contribution -0.508 1.315 0.072 1.411 sum -0.661 -10.305 1.872 10.495 Atomic orbital electron populations 1.69884 1.09024 1.30616 1.35510 1.26751 0.95487 1.04463 0.91048 0.85167 0.79090 0.75802 0.79484 1.18564 1.19028 1.18310 1.19791 0.98309 0.92437 1.42331 0.90863 1.17696 0.91816 0.92277 0.89131 1.21213 1.00656 0.96837 1.02809 1.20236 0.98754 0.91571 0.99359 1.20797 1.00801 0.95202 1.10196 1.19314 0.93877 0.89096 0.97099 1.20426 1.04449 0.91207 1.09178 1.60249 1.56885 1.00925 1.03554 1.21631 0.96815 0.96290 0.88266 1.22160 1.01265 0.93915 1.00139 1.23152 0.97144 0.97804 1.02471 1.23041 1.03764 1.03620 0.90662 1.23148 0.93268 0.95480 0.95162 1.21376 0.98300 0.90507 1.01970 0.90038 0.87604 0.87459 0.89603 0.94950 0.92886 0.87235 0.88949 0.86948 0.87119 0.89209 0.89751 0.87882 0.89865 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.93 10.96 21.82 0.24 -43.69 16 2 C 0.04 1.93 5.14 85.25 0.44 2.37 16 3 Si 0.98 38.94 29.60 68.60 2.03 40.97 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.50 -27.97 9.04 23.46 0.21 -27.76 16 8 H 0.07 4.00 7.91 -2.91 -0.02 3.98 16 9 C 0.09 5.31 5.57 -21.36 -0.12 5.19 16 10 C -0.20 -10.69 8.71 22.75 0.20 -10.50 16 11 C -0.08 -3.90 10.01 22.17 0.22 -3.68 16 12 C -0.27 -12.00 6.25 -19.24 -0.12 -12.12 16 13 C 0.10 4.75 5.52 38.24 0.21 4.96 16 14 C -0.23 -12.29 9.81 22.93 0.22 -12.07 16 15 N -0.50 -18.95 5.04 -688.84 -3.47 -22.42 16 16 C 0.10 3.22 5.03 86.30 0.43 3.66 16 17 C -0.16 -3.93 5.02 -10.79 -0.05 -3.98 16 18 C -0.17 -3.26 9.81 30.62 0.30 -2.96 16 19 C -0.17 -3.56 10.25 30.62 0.31 -3.24 16 20 C 0.06 1.72 6.72 86.65 0.58 2.30 16 21 C -0.08 -2.82 6.93 30.69 0.21 -2.61 16 22 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 23 H 0.11 5.99 6.15 -2.91 -0.02 5.97 16 24 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 25 H 0.09 4.51 8.06 -2.91 -0.02 4.49 16 26 H 0.03 1.10 7.76 -2.39 -0.02 1.08 16 27 H 0.05 2.01 8.06 -2.39 -0.02 1.99 16 28 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.09 1.79 8.03 -2.38 -0.02 1.77 16 30 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.10 2.54 6.78 -2.39 -0.02 2.53 16 35 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -61.64 296.81 2.91 -58.73 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 1.05 Total: 26.83 kcal Atomic # 6 Polarization: -63.48 SS G_CDS: 3.06 Total: -60.43 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -3.23 Total: -66.11 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -61.64 2.91 -58.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523626.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.689 kcal (2) G-P(sol) polarization free energy of solvation -61.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds