Wall clock time and date at job start Mon Mar 30 2020 05:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00130 * 2 1 4 4 H 1.48504 * 109.46679 * 269.99910 * 3 2 1 5 5 H 1.48501 * 109.46744 * 29.99714 * 3 2 1 6 6 H 1.48497 * 109.47245 * 149.99979 * 3 2 1 7 7 C 1.37878 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00077 * 185.15828 * 7 2 1 9 9 C 1.50703 * 120.00092 * 4.87881 * 7 2 1 10 10 N 1.46900 * 110.26770 * 302.36297 * 9 7 2 11 11 C 1.46898 * 111.00035 * 305.59296 * 10 9 7 12 12 C 1.53000 * 117.50088 * 223.05297 * 11 10 9 13 13 C 1.53004 * 60.00169 * 252.51087 * 12 11 10 14 14 C 1.54341 * 110.30235 * 64.43646 * 9 7 2 15 15 C 1.54350 * 102.38993 * 92.57185 * 14 9 7 16 16 C 1.51365 * 105.17042 * 26.35121 * 15 14 9 17 17 C 1.38499 * 130.39934 * 162.79151 * 16 15 14 18 18 C 1.38101 * 120.21710 * 180.02562 * 17 16 15 19 19 C 1.38253 * 119.93889 * 359.95869 * 18 17 16 20 20 C 1.38105 * 119.93060 * 0.02562 * 19 18 17 21 21 C 1.38225 * 109.75692 * 342.81036 * 16 15 14 22 22 H 0.97002 * 120.00099 * 5.00155 * 1 2 3 23 23 H 1.00900 * 110.99864 * 181.63910 * 10 9 7 24 24 H 1.09003 * 115.55343 * 8.76656 * 11 10 9 25 25 H 1.08999 * 117.49666 * 0.02562 * 12 11 10 26 26 H 1.08998 * 117.49939 * 145.01835 * 12 11 10 27 27 H 1.08994 * 117.49876 * 252.50901 * 13 12 11 28 28 H 1.08997 * 117.49701 * 107.48655 * 13 12 11 29 29 H 1.09003 * 110.82473 * 210.80110 * 14 9 7 30 30 H 1.08998 * 110.82357 * 334.15449 * 14 9 7 31 31 H 1.09006 * 110.30005 * 145.26843 * 15 14 9 32 32 H 1.08998 * 110.30591 * 267.32280 * 15 14 9 33 33 H 1.08003 * 119.88681 * 0.02562 * 17 16 15 34 34 H 1.08010 * 120.02992 * 179.97438 * 18 17 16 35 35 H 1.07996 * 120.03129 * 179.97438 * 19 18 17 36 36 H 1.08001 * 119.89106 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0813 -1.1959 0.0846 9 6 1.2551 -2.4969 -0.1099 10 7 0.2787 -2.6163 0.9811 11 6 0.9263 -2.4444 2.2884 12 6 0.5219 -3.4046 3.4088 13 6 0.0589 -1.9468 3.4465 14 6 0.5450 -2.5920 -1.4769 15 6 1.5906 -3.3264 -2.3428 16 6 2.4136 -4.1388 -1.3662 17 6 3.2637 -5.2105 -1.5828 18 6 3.9185 -5.8038 -0.5215 19 6 3.7262 -5.3266 0.7618 20 6 2.8792 -4.2578 0.9798 21 6 2.2208 -3.6621 -0.0831 22 1 -0.4850 0.8369 -0.0732 23 1 -0.2111 -3.4972 0.9332 24 1 1.9644 -2.1136 2.2589 25 1 -0.2244 -4.1641 3.1758 26 1 1.2941 -3.7059 4.1166 27 1 0.5266 -1.2890 4.1790 28 1 -0.9922 -1.7470 3.2383 29 1 -0.3717 -3.1764 -1.3976 30 1 0.3363 -1.5991 -1.8751 31 1 1.0953 -3.9833 -3.0580 32 1 2.2217 -2.6072 -2.8650 33 1 3.4149 -5.5835 -2.5850 34 1 4.5805 -6.6397 -0.6938 35 1 4.2372 -5.7897 1.5929 36 1 2.7292 -3.8858 1.9825 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260539350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:36 Heat of formation + Delta-G solvation = 60.373508 kcal Electronic energy + Delta-G solvation = -17945.592129 eV Core-core repulsion = 15395.267642 eV Total energy + Delta-G solvation = -2550.324487 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.55730 -36.72215 -35.11295 -32.34310 -31.19783 -29.38877 -27.97311 -26.03133 -23.74113 -21.89229 -21.50465 -20.65232 -19.45951 -19.38810 -16.43972 -15.72932 -14.86275 -14.64257 -14.51196 -14.04958 -13.75048 -13.73687 -12.94838 -12.44773 -12.18424 -11.91266 -11.55665 -11.16797 -10.99444 -10.80891 -10.76860 -10.57611 -10.47005 -10.32245 -10.10232 -10.04820 -9.46762 -9.27108 -9.10148 -8.38252 -8.13567 -7.75591 -6.73900 -5.87734 -4.05109 2.04175 2.10852 3.31260 3.39420 3.42228 4.39726 4.53461 4.80521 5.17325 5.27121 5.43120 5.51550 5.63101 5.70892 5.82455 5.91489 6.03212 6.16989 6.23083 6.25241 6.27789 6.34622 6.47996 6.64824 6.71851 6.81301 6.86100 6.98315 7.01951 7.05700 7.14617 7.25364 7.50983 7.64553 7.73364 7.85544 8.13771 8.56186 8.81153 9.10391 9.62239 11.11766 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019098 B = 0.010995 C = 0.008623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.738853 B = 2546.100122 C = 3246.363222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.089 3.911 3 Si 0.876 3.124 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.283 3.717 10 N -0.610 5.610 11 C 0.083 3.917 12 C -0.237 4.237 13 C -0.180 4.180 14 C -0.088 4.088 15 C -0.077 4.077 16 C -0.098 4.098 17 C -0.119 4.119 18 C -0.141 4.141 19 C -0.133 4.133 20 C -0.113 4.113 21 C -0.085 4.085 22 H 0.254 0.746 23 H 0.303 0.697 24 H 0.110 0.890 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.664 -7.469 0.265 7.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.119 4.119 3 Si 0.704 3.296 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.072 0.928 9 C 0.194 3.806 10 N -0.235 5.235 11 C -0.028 4.028 12 C -0.276 4.276 13 C -0.218 4.218 14 C -0.126 4.126 15 C -0.115 4.115 16 C -0.098 4.098 17 C -0.137 4.137 18 C -0.159 4.159 19 C -0.151 4.151 20 C -0.131 4.131 21 C -0.087 4.087 22 H 0.065 0.935 23 H 0.121 0.879 24 H 0.127 0.873 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.242 -6.669 0.264 7.041 hybrid contribution 1.057 0.048 0.222 1.081 sum 3.298 -6.620 0.486 7.413 Atomic orbital electron populations 1.70166 1.05279 1.25736 1.45336 1.24850 0.94603 0.98074 0.94324 0.86870 0.80175 0.84532 0.78059 1.20757 1.21327 1.20077 1.20645 0.92286 0.88819 1.54170 0.92845 1.18275 0.85034 0.89264 0.88001 1.60490 1.28200 1.34916 0.99881 1.22096 0.97255 0.98218 0.85271 1.23467 1.04219 0.93724 1.06209 1.22922 1.01287 0.94557 1.03065 1.22159 0.94679 1.00137 0.95637 1.21068 0.96971 0.96911 0.96523 1.20757 0.97420 0.95173 0.96493 1.20526 0.98140 0.96862 0.98216 1.20785 1.01314 1.00774 0.93059 1.20923 0.99811 0.97905 0.96489 1.20865 0.96977 0.96120 0.99175 1.22202 0.97287 0.96656 0.92581 0.93535 0.87888 0.87274 0.90048 0.90404 0.90447 0.89334 0.93942 0.89463 0.92769 0.90761 0.87457 0.87203 0.87204 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.22 11.62 55.43 0.64 -21.58 16 2 C 0.09 2.32 4.98 -17.82 -0.09 2.23 16 3 Si 0.88 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.52 -13.39 6.49 -34.44 -0.22 -13.61 16 8 H 0.05 1.44 7.77 -52.48 -0.41 1.03 16 9 C 0.28 6.51 0.32 -132.88 -0.04 6.46 16 10 N -0.61 -13.67 5.50 -94.33 -0.52 -14.19 16 11 C 0.08 1.75 3.74 -67.71 -0.25 1.49 16 12 C -0.24 -4.15 9.82 -26.73 -0.26 -4.42 16 13 C -0.18 -3.49 10.46 -26.73 -0.28 -3.77 16 14 C -0.09 -1.93 5.93 -25.32 -0.15 -2.08 16 15 C -0.08 -1.49 6.76 -26.85 -0.18 -1.67 16 16 C -0.10 -1.94 6.14 -104.20 -0.64 -2.58 16 17 C -0.12 -2.07 10.04 -39.54 -0.40 -2.47 16 18 C -0.14 -2.29 10.05 -39.63 -0.40 -2.69 16 19 C -0.13 -2.26 10.05 -39.62 -0.40 -2.66 16 20 C -0.11 -2.20 9.24 -39.54 -0.37 -2.56 16 21 C -0.09 -1.80 4.95 -104.21 -0.52 -2.32 16 22 H 0.25 6.64 8.32 -40.82 -0.34 6.30 16 23 H 0.30 6.46 8.46 -39.29 -0.33 6.13 16 24 H 0.11 2.49 6.00 -51.93 -0.31 2.18 16 25 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 26 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 29 H 0.04 0.90 8.04 -51.93 -0.42 0.48 16 30 H 0.09 2.12 6.84 -51.93 -0.36 1.76 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 33 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 35 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 36 H 0.12 2.25 5.33 -52.49 -0.28 1.97 16 LS Contribution 290.68 15.07 4.38 4.38 Total: -1.00 -26.62 290.68 -9.75 -36.37 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -5.04 Total: 10.12 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: -4.20 Total: -30.64 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.12 Total: -35.77 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.62 -9.75 -36.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260539350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.747 kcal (2) G-P(sol) polarization free energy of solvation -26.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds