Wall clock time and date at job start Mon Mar 30 2020 05:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00130 * 2 1 4 4 H 1.48504 * 109.46679 * 269.99910 * 3 2 1 5 5 H 1.48501 * 109.46744 * 29.99714 * 3 2 1 6 6 H 1.48497 * 109.47245 * 149.99979 * 3 2 1 7 7 C 1.37878 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00077 * 185.15828 * 7 2 1 9 9 C 1.50703 * 120.00092 * 4.87881 * 7 2 1 10 10 N 1.46900 * 110.26770 * 302.36297 * 9 7 2 11 11 C 1.46898 * 111.00035 * 305.59296 * 10 9 7 12 12 C 1.53000 * 117.50088 * 223.05297 * 11 10 9 13 13 C 1.53004 * 60.00169 * 252.51087 * 12 11 10 14 14 C 1.54341 * 110.30235 * 64.43646 * 9 7 2 15 15 C 1.54350 * 102.38993 * 92.57185 * 14 9 7 16 16 C 1.51365 * 105.17042 * 26.35121 * 15 14 9 17 17 C 1.38499 * 130.39934 * 162.79151 * 16 15 14 18 18 C 1.38101 * 120.21710 * 180.02562 * 17 16 15 19 19 C 1.38253 * 119.93889 * 359.95869 * 18 17 16 20 20 C 1.38105 * 119.93060 * 0.02562 * 19 18 17 21 21 C 1.38225 * 109.75692 * 342.81036 * 16 15 14 22 22 H 0.97002 * 120.00099 * 5.00155 * 1 2 3 23 23 H 1.00900 * 110.99864 * 181.63910 * 10 9 7 24 24 H 1.09003 * 115.55343 * 8.76656 * 11 10 9 25 25 H 1.08999 * 117.49666 * 0.02562 * 12 11 10 26 26 H 1.08998 * 117.49939 * 145.01835 * 12 11 10 27 27 H 1.08994 * 117.49876 * 252.50901 * 13 12 11 28 28 H 1.08997 * 117.49701 * 107.48655 * 13 12 11 29 29 H 1.09003 * 110.82473 * 210.80110 * 14 9 7 30 30 H 1.08998 * 110.82357 * 334.15449 * 14 9 7 31 31 H 1.09006 * 110.30005 * 145.26843 * 15 14 9 32 32 H 1.08998 * 110.30591 * 267.32280 * 15 14 9 33 33 H 1.08003 * 119.88681 * 0.02562 * 17 16 15 34 34 H 1.08010 * 120.02992 * 179.97438 * 18 17 16 35 35 H 1.07996 * 120.03129 * 179.97438 * 19 18 17 36 36 H 1.08001 * 119.89106 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0813 -1.1959 0.0846 9 6 1.2551 -2.4969 -0.1099 10 7 0.2787 -2.6163 0.9811 11 6 0.9263 -2.4444 2.2884 12 6 0.5219 -3.4046 3.4088 13 6 0.0589 -1.9468 3.4465 14 6 0.5450 -2.5920 -1.4769 15 6 1.5906 -3.3264 -2.3428 16 6 2.4136 -4.1388 -1.3662 17 6 3.2637 -5.2105 -1.5828 18 6 3.9185 -5.8038 -0.5215 19 6 3.7262 -5.3266 0.7618 20 6 2.8792 -4.2578 0.9798 21 6 2.2208 -3.6621 -0.0831 22 1 -0.4850 0.8369 -0.0732 23 1 -0.2111 -3.4972 0.9332 24 1 1.9644 -2.1136 2.2589 25 1 -0.2244 -4.1641 3.1758 26 1 1.2941 -3.7059 4.1166 27 1 0.5266 -1.2890 4.1790 28 1 -0.9922 -1.7470 3.2383 29 1 -0.3717 -3.1764 -1.3976 30 1 0.3363 -1.5991 -1.8751 31 1 1.0953 -3.9833 -3.0580 32 1 2.2217 -2.6072 -2.8650 33 1 3.4149 -5.5835 -2.5850 34 1 4.5805 -6.6397 -0.6938 35 1 4.2372 -5.7897 1.5929 36 1 2.7292 -3.8858 1.9825 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260539350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:35 Heat of formation + Delta-G solvation = 46.744242 kcal Electronic energy + Delta-G solvation = -17946.183138 eV Core-core repulsion = 15395.267642 eV Total energy + Delta-G solvation = -2550.915497 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.06718 -38.26637 -36.66997 -34.16272 -32.84090 -30.86798 -29.46891 -27.89204 -25.44803 -23.36003 -22.99469 -22.18055 -21.06749 -21.00768 -18.23799 -17.29997 -16.63538 -16.24630 -16.00192 -15.66859 -15.34026 -15.22920 -14.45171 -14.01908 -13.80919 -13.43872 -13.21298 -12.87279 -12.77698 -12.51156 -12.29151 -12.24205 -12.13444 -11.95952 -11.80294 -11.54584 -11.10583 -10.97295 -10.84046 -10.36458 -9.53243 -9.24092 -8.39241 -7.86348 -6.08054 0.64815 0.71242 1.40183 1.44614 1.50284 2.48924 3.06490 3.22411 3.33890 3.70894 3.86433 4.14968 4.27373 4.30346 4.32381 4.43789 4.56101 4.63820 4.72417 4.77801 4.85180 4.87139 4.96202 5.11010 5.24222 5.30839 5.32056 5.39438 5.42493 5.57048 5.65415 5.74395 5.77954 5.90284 6.09395 6.27603 6.35362 6.72898 6.99212 7.32094 7.60826 9.10355 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019098 B = 0.010995 C = 0.008623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.738853 B = 2546.100122 C = 3246.363222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.054 3.946 3 Si 0.922 3.078 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.524 4.524 8 H 0.032 0.968 9 C 0.279 3.721 10 N -0.622 5.622 11 C 0.062 3.938 12 C -0.199 4.199 13 C -0.186 4.186 14 C -0.087 4.087 15 C -0.070 4.070 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.133 4.133 19 C -0.131 4.131 20 C -0.129 4.129 21 C -0.113 4.113 22 H 0.251 0.749 23 H 0.306 0.694 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.136 0.864 34 H 0.149 0.851 35 H 0.141 0.859 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.916 -9.593 0.436 10.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.151 4.151 3 Si 0.750 3.250 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.562 4.562 8 H 0.050 0.950 9 C 0.190 3.810 10 N -0.248 5.248 11 C -0.049 4.049 12 C -0.238 4.238 13 C -0.225 4.225 14 C -0.126 4.126 15 C -0.107 4.107 16 C -0.118 4.118 17 C -0.137 4.137 18 C -0.151 4.151 19 C -0.149 4.149 20 C -0.147 4.147 21 C -0.115 4.115 22 H 0.061 0.939 23 H 0.124 0.876 24 H 0.103 0.897 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.154 0.846 34 H 0.167 0.833 35 H 0.158 0.842 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.505 -8.792 0.436 9.475 hybrid contribution 0.727 0.648 0.197 0.994 sum 4.232 -8.144 0.633 9.199 Atomic orbital electron populations 1.70260 1.06031 1.25826 1.46569 1.25310 0.95170 1.00136 0.94466 0.86143 0.78965 0.81980 0.77942 1.20386 1.21415 1.20457 1.20758 0.91369 0.90636 1.53472 0.94995 1.18151 0.85564 0.89036 0.88275 1.60400 1.28738 1.35148 1.00507 1.21924 0.96150 1.01248 0.85601 1.23442 1.03975 0.92614 1.03783 1.22943 1.00373 0.96571 1.02590 1.22028 0.95622 0.98806 0.96114 1.20960 0.96251 0.97006 0.96521 1.20901 0.98665 0.96458 0.95761 1.20883 0.96988 0.95700 1.00173 1.21258 1.00610 1.01020 0.92180 1.21294 0.98721 0.96759 0.98146 1.20978 0.97894 0.97252 0.98606 1.22056 0.98396 0.97011 0.94080 0.93934 0.87638 0.89722 0.89034 0.88138 0.89577 0.90522 0.93906 0.92549 0.90148 0.91449 0.84619 0.83302 0.84170 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.96 11.62 21.45 0.25 -46.71 16 2 C 0.05 2.91 4.98 84.66 0.42 3.33 16 3 Si 0.92 43.24 29.54 68.60 2.03 45.26 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 7 C -0.52 -27.81 6.49 25.60 0.17 -27.64 16 8 H 0.03 1.78 7.77 -2.91 -0.02 1.76 16 9 C 0.28 13.11 0.32 2.70 0.00 13.11 16 10 N -0.62 -28.50 5.50 -452.35 -2.49 -30.99 16 11 C 0.06 2.63 3.74 44.92 0.17 2.80 16 12 C -0.20 -6.67 9.82 30.60 0.30 -6.37 16 13 C -0.19 -7.18 10.46 30.60 0.32 -6.86 16 14 C -0.09 -3.93 5.93 31.51 0.19 -3.75 16 15 C -0.07 -2.68 6.76 30.52 0.21 -2.47 16 16 C -0.12 -4.49 6.14 -19.59 -0.12 -4.62 16 17 C -0.12 -3.75 10.04 22.30 0.22 -3.53 16 18 C -0.13 -3.74 10.05 22.24 0.22 -3.52 16 19 C -0.13 -4.03 10.05 22.24 0.22 -3.81 16 20 C -0.13 -4.87 9.24 22.30 0.21 -4.66 16 21 C -0.11 -4.77 4.95 -19.60 -0.10 -4.87 16 22 H 0.25 13.50 8.32 -92.71 -0.77 12.73 16 23 H 0.31 13.22 8.46 -89.69 -0.76 12.47 16 24 H 0.08 3.98 6.00 -2.39 -0.01 3.97 16 25 H 0.09 2.90 8.09 -2.39 -0.02 2.89 16 26 H 0.10 2.92 8.14 -2.39 -0.02 2.91 16 27 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 28 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.04 1.86 8.04 -2.39 -0.02 1.84 16 30 H 0.06 2.85 6.84 -2.39 -0.02 2.83 16 31 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 32 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 34 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 36 H 0.11 4.26 5.33 -2.91 -0.02 4.24 16 Total: -1.00 -58.27 290.68 2.53 -55.74 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.32 Total: 29.55 kcal Atomic # 6 Polarization: -55.29 SS G_CDS: 2.43 Total: -52.86 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -2.24 Total: -77.70 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -58.27 2.53 -55.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260539350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.482 kcal (2) G-P(sol) polarization free energy of solvation -58.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds