Wall clock time and date at job start Mon Mar 30 2020 05:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99683 * 2 1 4 4 H 1.48501 * 109.46895 * 269.99701 * 3 2 1 5 5 H 1.48501 * 109.47146 * 29.99591 * 3 2 1 6 6 H 1.48498 * 109.47312 * 150.00218 * 3 2 1 7 7 C 1.37873 * 120.00724 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00648 * 187.62315 * 7 2 1 9 9 C 1.50701 * 119.99406 * 7.62706 * 7 2 1 10 10 N 1.46902 * 110.34928 * 303.21433 * 9 7 2 11 11 C 1.46906 * 110.99841 * 299.71562 * 10 9 7 12 12 C 1.53003 * 117.49715 * 222.11358 * 11 10 9 13 13 C 1.53000 * 117.49918 * 153.49136 * 11 10 9 14 14 C 1.54353 * 110.30207 * 181.09243 * 9 7 2 15 15 C 1.54356 * 102.38848 * 267.42189 * 14 9 7 16 16 C 1.51369 * 105.16741 * 333.65101 * 15 14 9 17 17 C 1.38494 * 130.38631 * 197.17159 * 16 15 14 18 18 C 1.38106 * 120.21420 * 179.70853 * 17 16 15 19 19 C 1.38256 * 119.93213 * 0.59672 * 18 17 16 20 20 C 1.38105 * 119.93611 * 359.42037 * 19 18 17 21 21 C 1.38216 * 109.76366 * 17.19138 * 16 15 14 22 22 H 0.96998 * 120.00243 * 0.02562 * 1 2 3 23 23 H 1.00899 * 110.99919 * 63.66720 * 10 9 7 24 24 H 1.09002 * 115.55139 * 7.81709 * 11 10 9 25 25 H 1.08997 * 117.49770 * 0.02562 * 12 11 10 26 26 H 1.08999 * 117.49828 * 145.02236 * 12 11 10 27 27 H 1.08998 * 117.49970 * 214.97546 * 13 11 10 28 28 H 1.09003 * 117.49587 * 0.02562 * 13 11 10 29 29 H 1.08992 * 110.82341 * 149.19678 * 14 9 7 30 30 H 1.08998 * 110.99216 * 25.72155 * 14 9 7 31 31 H 1.08993 * 110.29926 * 214.72565 * 15 14 9 32 32 H 1.08997 * 110.30163 * 92.57103 * 15 14 9 33 33 H 1.08002 * 119.89697 * 0.05214 * 17 16 15 34 34 H 1.08000 * 120.03720 * 180.32114 * 18 17 16 35 35 H 1.07997 * 120.03266 * 179.70437 * 19 18 17 36 36 H 1.07991 * 119.89181 * 180.30248 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0047 -1.1939 0.0005 8 1 3.0775 -1.1980 0.1246 9 6 1.2612 -2.4934 -0.1721 10 7 0.2262 -2.6309 0.8613 11 6 0.8196 -2.6221 2.2051 12 6 0.2768 -3.6265 3.2237 13 6 -0.0581 -2.1400 3.3618 14 6 2.2417 -3.6838 -0.1098 15 6 2.5983 -3.8973 -1.5963 16 6 1.4079 -3.3705 -2.3688 17 6 1.0274 -3.5802 -3.6838 18 6 -0.1200 -2.9912 -4.1776 19 6 -0.8853 -2.1796 -3.3608 20 6 -0.5073 -1.9691 -2.0493 21 6 0.6397 -2.5638 -1.5505 22 1 -0.4850 0.8400 -0.0004 23 1 -0.4737 -1.9099 0.7703 24 1 1.8830 -2.3862 2.2480 25 1 -0.5203 -4.2940 2.8966 26 1 0.9830 -4.0516 3.9369 27 1 0.4278 -1.5872 4.1659 28 1 -1.0760 -1.8297 3.1258 29 1 1.7534 -4.5668 0.3023 30 1 3.1295 -3.4285 0.4688 31 1 2.7433 -4.9578 -1.8018 32 1 3.4956 -3.3350 -1.8545 33 1 1.6269 -4.2107 -4.3237 34 1 -0.4169 -3.1608 -5.2021 35 1 -1.7803 -1.7144 -3.7467 36 1 -1.1082 -1.3389 -1.4105 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260539356.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:38 Heat of formation + Delta-G solvation = 51.432157 kcal Electronic energy + Delta-G solvation = -17934.920866 eV Core-core repulsion = 15384.208652 eV Total energy + Delta-G solvation = -2550.712213 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.26160 -36.73688 -34.83364 -32.83636 -30.70993 -29.23898 -27.87085 -26.09842 -23.69542 -21.74443 -21.49379 -20.45148 -19.69874 -18.81885 -16.69264 -15.56036 -14.83673 -14.68319 -14.26408 -14.05780 -13.83764 -13.44639 -12.79139 -12.26666 -12.13498 -11.74651 -11.63577 -11.28866 -11.03719 -10.77942 -10.73143 -10.59085 -10.49659 -10.36085 -10.16958 -9.80670 -9.52306 -9.24757 -9.15816 -8.71172 -7.75678 -7.51643 -7.00184 -6.08851 -4.29988 2.37392 2.49044 3.20309 3.27629 3.29992 4.27368 4.80067 4.83938 5.07834 5.40312 5.45917 5.74287 5.83859 5.88064 5.94756 5.95944 6.08391 6.17023 6.34549 6.37772 6.43466 6.54075 6.59405 6.78419 6.86005 6.89881 6.93015 6.96612 7.01054 7.04988 7.36456 7.41075 7.59031 7.69723 7.94947 8.06011 8.10168 8.56515 8.80024 9.09205 9.42820 10.79253 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.016896 B = 0.011840 C = 0.009005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.775508 B = 2364.272310 C = 3108.536001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.076 3.924 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.267 3.733 10 N -0.655 5.655 11 C 0.072 3.928 12 C -0.198 4.198 13 C -0.203 4.203 14 C -0.106 4.106 15 C -0.069 4.069 16 C -0.117 4.117 17 C -0.124 4.124 18 C -0.149 4.149 19 C -0.141 4.141 20 C -0.086 4.086 21 C -0.016 4.016 22 H 0.267 0.733 23 H 0.365 0.635 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.399 -4.397 -0.885 4.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.127 4.127 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.077 0.923 9 C 0.177 3.823 10 N -0.291 5.291 11 C -0.040 4.040 12 C -0.236 4.236 13 C -0.241 4.241 14 C -0.144 4.144 15 C -0.107 4.107 16 C -0.117 4.117 17 C -0.143 4.143 18 C -0.167 4.167 19 C -0.160 4.160 20 C -0.104 4.104 21 C -0.017 4.017 22 H 0.077 0.923 23 H 0.192 0.808 24 H 0.113 0.887 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.193 -4.928 -0.936 5.019 hybrid contribution 0.651 2.080 -0.084 2.181 sum 0.845 -2.848 -1.020 3.141 Atomic orbital electron populations 1.69457 1.05916 1.27187 1.49565 1.24908 0.94840 0.99159 0.93778 0.86560 0.79949 0.83126 0.78231 1.20570 1.21166 1.19923 1.21628 0.94212 0.90793 1.50114 0.92255 1.18082 0.87472 0.91639 0.85074 1.60862 1.15360 1.53475 0.99355 1.21983 0.96625 0.98678 0.86745 1.23116 1.04025 0.92307 1.04201 1.23041 1.01448 0.96696 1.02944 1.22350 0.99034 0.98788 0.94191 1.20881 0.95730 0.98815 0.95254 1.20562 0.97738 0.99536 0.93886 1.20330 0.97514 1.01888 0.94532 1.20697 0.96566 1.00671 0.98791 1.20989 0.99863 1.00225 0.94882 1.21142 0.96946 0.97796 0.94547 1.20779 0.92083 0.91555 0.97256 0.92278 0.80769 0.88683 0.89586 0.90448 0.90399 0.89611 0.92085 0.92119 0.92681 0.91343 0.87996 0.87740 0.87674 0.84304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.19 8.47 55.43 0.47 -21.72 16 2 C 0.08 1.93 5.25 -17.82 -0.09 1.84 16 3 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.53 -13.35 6.84 -34.44 -0.24 -13.58 16 8 H 0.06 1.52 7.61 -52.49 -0.40 1.12 16 9 C 0.27 6.21 0.40 -132.87 -0.05 6.15 16 10 N -0.65 -14.95 6.28 -94.32 -0.59 -15.54 16 11 C 0.07 1.50 5.11 -67.71 -0.35 1.15 16 12 C -0.20 -3.53 10.46 -26.73 -0.28 -3.81 16 13 C -0.20 -3.83 10.32 -26.73 -0.28 -4.10 16 14 C -0.11 -2.18 5.30 -25.31 -0.13 -2.31 16 15 C -0.07 -1.34 6.76 -26.84 -0.18 -1.52 16 16 C -0.12 -2.49 6.14 -104.21 -0.64 -3.13 16 17 C -0.12 -2.40 10.04 -39.54 -0.40 -2.80 16 18 C -0.15 -2.78 10.05 -39.62 -0.40 -3.18 16 19 C -0.14 -2.84 10.05 -39.62 -0.40 -3.23 16 20 C -0.09 -1.97 9.01 -39.54 -0.36 -2.32 16 21 C -0.02 -0.37 4.83 -104.21 -0.50 -0.87 16 22 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 23 H 0.37 8.93 5.93 -39.29 -0.23 8.70 16 24 H 0.10 2.10 7.05 -51.93 -0.37 1.73 16 25 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 29 H 0.06 1.23 8.09 -51.93 -0.42 0.81 16 30 H 0.06 1.21 7.77 -51.93 -0.40 0.81 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 36 H 0.14 3.33 6.11 -52.49 -0.32 3.01 16 LS Contribution 290.04 15.07 4.37 4.37 Total: -1.00 -25.47 290.04 -10.15 -35.62 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -5.08 Total: 13.59 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: -4.29 Total: -31.71 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.12 Total: -37.26 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -25.47 -10.15 -35.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260539356.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.047 kcal (2) G-P(sol) polarization free energy of solvation -25.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds