Wall clock time and date at job start Mon Mar 30 2020 05:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99683 * 2 1 4 4 H 1.48501 * 109.46895 * 269.99701 * 3 2 1 5 5 H 1.48501 * 109.47146 * 29.99591 * 3 2 1 6 6 H 1.48498 * 109.47312 * 150.00218 * 3 2 1 7 7 C 1.37873 * 120.00724 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00648 * 187.62315 * 7 2 1 9 9 C 1.50701 * 119.99406 * 7.62706 * 7 2 1 10 10 N 1.46902 * 110.34928 * 303.21433 * 9 7 2 11 11 C 1.46906 * 110.99841 * 299.71562 * 10 9 7 12 12 C 1.53003 * 117.49715 * 222.11358 * 11 10 9 13 13 C 1.53000 * 117.49918 * 153.49136 * 11 10 9 14 14 C 1.54353 * 110.30207 * 181.09243 * 9 7 2 15 15 C 1.54356 * 102.38848 * 267.42189 * 14 9 7 16 16 C 1.51369 * 105.16741 * 333.65101 * 15 14 9 17 17 C 1.38494 * 130.38631 * 197.17159 * 16 15 14 18 18 C 1.38106 * 120.21420 * 179.70853 * 17 16 15 19 19 C 1.38256 * 119.93213 * 0.59672 * 18 17 16 20 20 C 1.38105 * 119.93611 * 359.42037 * 19 18 17 21 21 C 1.38216 * 109.76366 * 17.19138 * 16 15 14 22 22 H 0.96998 * 120.00243 * 0.02562 * 1 2 3 23 23 H 1.00899 * 110.99919 * 63.66720 * 10 9 7 24 24 H 1.09002 * 115.55139 * 7.81709 * 11 10 9 25 25 H 1.08997 * 117.49770 * 0.02562 * 12 11 10 26 26 H 1.08999 * 117.49828 * 145.02236 * 12 11 10 27 27 H 1.08998 * 117.49970 * 214.97546 * 13 11 10 28 28 H 1.09003 * 117.49587 * 0.02562 * 13 11 10 29 29 H 1.08992 * 110.82341 * 149.19678 * 14 9 7 30 30 H 1.08998 * 110.99216 * 25.72155 * 14 9 7 31 31 H 1.08993 * 110.29926 * 214.72565 * 15 14 9 32 32 H 1.08997 * 110.30163 * 92.57103 * 15 14 9 33 33 H 1.08002 * 119.89697 * 0.05214 * 17 16 15 34 34 H 1.08000 * 120.03720 * 180.32114 * 18 17 16 35 35 H 1.07997 * 120.03266 * 179.70437 * 19 18 17 36 36 H 1.07991 * 119.89181 * 180.30248 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0047 -1.1939 0.0005 8 1 3.0775 -1.1980 0.1246 9 6 1.2612 -2.4934 -0.1721 10 7 0.2262 -2.6309 0.8613 11 6 0.8196 -2.6221 2.2051 12 6 0.2768 -3.6265 3.2237 13 6 -0.0581 -2.1400 3.3618 14 6 2.2417 -3.6838 -0.1098 15 6 2.5983 -3.8973 -1.5963 16 6 1.4079 -3.3705 -2.3688 17 6 1.0274 -3.5802 -3.6838 18 6 -0.1200 -2.9912 -4.1776 19 6 -0.8853 -2.1796 -3.3608 20 6 -0.5073 -1.9691 -2.0493 21 6 0.6397 -2.5638 -1.5505 22 1 -0.4850 0.8400 -0.0004 23 1 -0.4737 -1.9099 0.7703 24 1 1.8830 -2.3862 2.2480 25 1 -0.5203 -4.2940 2.8966 26 1 0.9830 -4.0516 3.9369 27 1 0.4278 -1.5872 4.1659 28 1 -1.0760 -1.8297 3.1258 29 1 1.7534 -4.5668 0.3023 30 1 3.1295 -3.4285 0.4688 31 1 2.7433 -4.9578 -1.8018 32 1 3.4956 -3.3350 -1.8545 33 1 1.6269 -4.2107 -4.3237 34 1 -0.4169 -3.1608 -5.2021 35 1 -1.7803 -1.7144 -3.7467 36 1 -1.1082 -1.3389 -1.4105 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260539356.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:38 Heat of formation + Delta-G solvation = 39.362251 kcal Electronic energy + Delta-G solvation = -17935.444256 eV Core-core repulsion = 15384.208652 eV Total energy + Delta-G solvation = -2551.235604 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.86731 -38.32607 -36.41825 -34.61700 -32.41808 -30.82669 -29.45019 -27.91368 -25.39765 -23.31982 -22.99752 -22.04195 -21.27706 -20.53265 -18.49610 -17.12771 -16.68234 -16.29909 -15.88763 -15.61313 -15.44974 -15.04665 -14.49380 -13.81657 -13.72794 -13.40482 -13.28480 -13.01777 -12.85155 -12.50810 -12.29581 -12.21847 -12.17794 -11.93759 -11.78219 -11.38799 -11.23062 -10.84648 -10.81860 -10.59289 -9.33916 -9.12313 -8.78033 -7.93373 -6.23935 0.78982 0.91889 1.34972 1.39354 1.44727 2.38351 3.08814 3.27184 3.28519 3.82583 3.92969 4.19048 4.32184 4.39405 4.41971 4.49538 4.55631 4.64681 4.81339 4.87915 4.89741 5.00939 5.03766 5.18737 5.27718 5.31066 5.36248 5.40382 5.44258 5.47729 5.69176 5.78758 5.84599 6.00905 6.18260 6.35483 6.49019 6.73144 7.01134 7.22954 7.50590 8.86725 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.016896 B = 0.011840 C = 0.009005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.775508 B = 2364.272310 C = 3108.536001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.043 3.957 3 Si 0.937 3.063 4 H -0.285 1.285 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.045 0.955 9 C 0.259 3.741 10 N -0.657 5.657 11 C 0.043 3.957 12 C -0.169 4.169 13 C -0.200 4.200 14 C -0.101 4.101 15 C -0.064 4.064 16 C -0.133 4.133 17 C -0.125 4.125 18 C -0.143 4.143 19 C -0.148 4.148 20 C -0.112 4.112 21 C -0.049 4.049 22 H 0.264 0.736 23 H 0.351 0.649 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.127 0.873 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.715 -5.530 -1.798 5.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.159 4.159 3 Si 0.765 3.235 4 H -0.212 1.212 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.063 0.937 9 C 0.169 3.831 10 N -0.290 5.290 11 C -0.069 4.069 12 C -0.208 4.208 13 C -0.239 4.239 14 C -0.139 4.139 15 C -0.101 4.101 16 C -0.134 4.134 17 C -0.143 4.143 18 C -0.160 4.160 19 C -0.166 4.166 20 C -0.131 4.131 21 C -0.050 4.050 22 H 0.074 0.926 23 H 0.176 0.824 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.121 0.879 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.145 0.855 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.517 -6.075 -1.838 6.367 hybrid contribution 0.527 2.419 0.179 2.482 sum 1.044 -3.656 -1.659 4.148 Atomic orbital electron populations 1.69571 1.06278 1.27128 1.49763 1.25387 0.95488 1.00984 0.94072 0.85884 0.79077 0.80939 0.77605 1.21188 1.20992 1.19969 1.21782 0.93629 0.92273 1.50244 0.93665 1.18173 0.87840 0.91561 0.85534 1.60949 1.15165 1.52656 1.00275 1.21998 0.96024 1.02053 0.86821 1.23128 1.03655 0.91561 1.02407 1.23063 1.00615 0.97992 1.02180 1.22273 0.98317 0.97811 0.95513 1.20873 0.95007 1.00540 0.93721 1.20918 0.98077 0.99511 0.94881 1.20759 0.97830 1.01638 0.94032 1.21142 0.95678 0.98983 1.00246 1.21279 1.00867 1.00439 0.93979 1.21124 0.97377 0.98730 0.95828 1.20944 0.93136 0.93183 0.97706 0.92613 0.82399 0.90381 0.89464 0.87868 0.89028 0.90431 0.91972 0.92332 0.89772 0.91213 0.84630 0.83882 0.85540 0.86566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.91 8.47 21.45 0.18 -45.73 16 2 C 0.04 2.19 5.25 84.65 0.44 2.64 16 3 Si 0.94 42.54 29.54 68.60 2.03 44.56 16 4 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.54 -27.88 6.84 25.60 0.17 -27.71 16 8 H 0.05 2.38 7.61 -2.91 -0.02 2.36 16 9 C 0.26 12.20 0.40 2.71 0.00 12.21 16 10 N -0.66 -30.59 6.28 -452.31 -2.84 -33.43 16 11 C 0.04 1.80 5.11 44.92 0.23 2.03 16 12 C -0.17 -5.79 10.46 30.60 0.32 -5.47 16 13 C -0.20 -7.45 10.32 30.60 0.32 -7.14 16 14 C -0.10 -4.15 5.30 31.51 0.17 -3.98 16 15 C -0.06 -2.37 6.76 30.52 0.21 -2.17 16 16 C -0.13 -5.51 6.14 -19.60 -0.12 -5.63 16 17 C -0.12 -4.42 10.04 22.30 0.22 -4.20 16 18 C -0.14 -4.87 10.05 22.24 0.22 -4.65 16 19 C -0.15 -5.72 10.05 22.24 0.22 -5.49 16 20 C -0.11 -5.18 9.01 22.30 0.20 -4.98 16 21 C -0.05 -2.29 4.83 -19.60 -0.09 -2.38 16 22 H 0.26 13.28 8.31 -92.71 -0.77 12.51 16 23 H 0.35 17.77 5.93 -89.69 -0.53 17.24 16 24 H 0.08 3.52 7.05 -2.39 -0.02 3.50 16 25 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 26 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 27 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 28 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 29 H 0.06 2.48 8.09 -2.39 -0.02 2.46 16 30 H 0.06 2.36 7.77 -2.39 -0.02 2.34 16 31 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 34 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 35 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 36 H 0.12 5.80 6.11 -2.92 -0.02 5.78 16 Total: -1.00 -54.98 290.04 2.42 -52.56 By element: Atomic # 1 Polarization: 38.42 SS G_CDS: 0.54 Total: 38.96 kcal Atomic # 6 Polarization: -59.44 SS G_CDS: 2.52 Total: -56.92 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -2.66 Total: -79.17 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -54.98 2.42 -52.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260539356.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.925 kcal (2) G-P(sol) polarization free energy of solvation -54.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds