Wall clock time and date at job start Mon Mar 30 2020 05:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86789 * 120.00159 * 2 1 4 4 H 1.48505 * 109.47233 * 239.99991 * 3 2 1 5 5 H 1.48503 * 109.47315 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47126 * 120.00256 * 3 2 1 7 7 C 1.39931 * 119.99435 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99795 * 197.77178 * 7 2 1 9 9 C 1.41409 * 120.00240 * 17.77850 * 7 2 1 10 10 C 1.40832 * 120.21034 * 24.53317 * 9 7 2 11 11 C 1.37647 * 119.59024 * 179.84193 * 10 9 7 12 12 C 1.38318 * 120.54320 * 359.91717 * 11 10 9 13 13 C 1.39834 * 120.73438 * 0.02562 * 12 11 10 14 14 C 1.38373 * 119.22340 * 0.27084 * 13 12 11 15 15 C 1.51540 * 108.09700 * 179.49074 * 14 13 12 16 16 C 1.54614 * 102.77709 * 343.88557 * 15 14 13 17 17 N 1.40099 * 129.77327 * 180.27829 * 13 12 11 18 18 C 1.46900 * 111.00263 * 76.32011 * 17 13 12 19 19 C 1.53007 * 109.46868 * 189.86870 * 18 17 13 20 20 C 1.53000 * 117.49429 * 243.74186 * 19 18 17 21 21 C 1.53001 * 117.49556 * 175.08324 * 19 18 17 22 22 H 0.96999 * 120.00217 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.20405 * 359.84054 * 10 9 7 24 24 H 1.07995 * 119.72535 * 179.97438 * 11 10 9 25 25 H 1.08005 * 119.63037 * 180.02562 * 12 11 10 26 26 H 1.08999 * 110.74934 * 225.57213 * 15 14 13 27 27 H 1.08999 * 110.75701 * 102.21156 * 15 14 13 28 28 H 1.08999 * 110.80065 * 267.23912 * 16 15 14 29 29 H 1.08997 * 110.79726 * 143.75827 * 16 15 14 30 30 H 1.08995 * 109.47683 * 69.86424 * 18 17 13 31 31 H 1.09003 * 109.46711 * 309.86060 * 18 17 13 32 32 H 1.09000 * 115.54928 * 29.41266 * 19 18 17 33 33 H 1.09001 * 117.50051 * 359.97438 * 20 19 18 34 34 H 1.08996 * 117.49533 * 145.02705 * 20 19 18 35 35 H 1.08999 * 117.49961 * 214.97751 * 21 19 18 36 36 H 1.09000 * 117.49615 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6962 1.2125 7 6 2.0078 -1.2119 0.0005 8 1 3.0492 -1.2342 0.2860 9 6 1.3514 -2.4074 -0.3728 10 6 0.2201 -2.3628 -1.2105 11 6 -0.4071 -3.5346 -1.5686 12 6 0.0658 -4.7524 -1.1141 13 6 1.1882 -4.8178 -0.2826 14 6 1.8231 -3.6458 0.0889 15 6 2.9865 -4.0060 0.9905 16 6 2.6633 -5.4613 1.4009 17 7 1.8252 -5.9331 0.2771 18 6 2.6367 -6.6347 -0.7264 19 6 3.1146 -7.9702 -0.1528 20 6 4.6217 -8.1628 0.0274 21 6 3.8826 -8.9064 -1.0880 22 1 -0.4850 0.8400 0.0004 23 1 -0.1530 -1.4151 -1.5696 24 1 -1.2750 -3.5029 -2.2105 25 1 -0.4374 -5.6628 -1.4046 26 1 3.0136 -3.3554 1.8646 27 1 3.9281 -3.9591 0.4435 28 1 2.1048 -5.4846 2.3366 29 1 3.5753 -6.0531 1.4785 30 1 3.4995 -6.0224 -0.9888 31 1 2.0356 -6.8163 -1.6174 32 1 2.4568 -8.4263 0.5871 33 1 5.2728 -7.3383 -0.2632 34 1 4.9554 -8.7461 0.8855 35 1 3.7304 -9.9785 -0.9632 36 1 4.0470 -8.5710 -2.1120 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260556268.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:09 Heat of formation + Delta-G solvation = 51.988535 kcal Electronic energy + Delta-G solvation = -17124.599766 eV Core-core repulsion = 14573.911679 eV Total energy + Delta-G solvation = -2550.688087 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.63968 -37.22255 -35.45380 -33.33715 -31.11475 -28.89982 -27.88950 -25.50700 -24.96712 -22.38668 -21.82799 -20.48127 -19.82641 -19.44702 -17.03836 -15.82201 -15.26103 -15.21131 -14.59368 -14.38275 -13.83403 -13.62824 -12.89928 -12.76501 -12.39951 -11.90529 -11.64473 -11.55482 -11.46102 -11.13269 -11.07648 -10.94181 -10.78547 -10.49843 -10.41539 -10.12521 -9.82846 -9.78280 -9.34868 -9.18330 -8.36124 -7.37262 -6.77206 -6.71013 -4.35709 2.79360 2.88576 3.05999 3.08580 3.22500 3.87168 3.92867 4.40253 4.62885 4.90225 5.01693 5.13551 5.50484 5.56664 5.64614 5.68826 5.81594 5.87432 5.93495 5.99426 6.08259 6.14985 6.30374 6.44090 6.45215 6.53347 6.72175 6.84379 7.04375 7.12434 7.16640 7.31308 7.69058 7.78022 7.94431 8.08212 8.11109 8.38028 8.64579 8.89969 8.98000 10.19091 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034734 B = 0.006056 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.941314 B = 4622.251008 C = 5119.029652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.461 4.461 8 H 0.075 0.925 9 C 0.135 3.865 10 C -0.168 4.168 11 C -0.097 4.097 12 C -0.221 4.221 13 C 0.097 3.903 14 C -0.237 4.237 15 C -0.084 4.084 16 C 0.051 3.949 17 N -0.490 5.490 18 C 0.091 3.909 19 C -0.140 4.140 20 C -0.186 4.186 21 C -0.181 4.181 22 H 0.281 0.719 23 H 0.121 0.879 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.464 -8.380 -0.385 10.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.491 4.491 8 H 0.093 0.907 9 C 0.132 3.868 10 C -0.187 4.187 11 C -0.116 4.116 12 C -0.242 4.242 13 C 0.003 3.997 14 C -0.241 4.241 15 C -0.123 4.123 16 C -0.077 4.077 17 N -0.208 5.208 18 C -0.035 4.035 19 C -0.159 4.159 20 C -0.223 4.223 21 C -0.218 4.218 22 H 0.092 0.908 23 H 0.138 0.862 24 H 0.111 0.889 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.901 -8.623 -0.179 9.920 hybrid contribution 0.851 1.332 -0.178 1.590 sum 5.751 -7.291 -0.357 9.293 Atomic orbital electron populations 1.69825 1.07546 1.29263 1.35174 1.25891 0.94693 1.01204 0.92246 0.86403 0.80189 0.80394 0.79939 1.18873 1.20325 1.19061 1.19487 0.98020 0.91185 1.40369 0.90670 1.16944 0.90838 0.90603 0.88369 1.21292 0.99319 0.96849 1.01269 1.20466 0.98628 0.92767 0.99721 1.19706 0.99788 0.96454 1.08273 1.19068 0.95256 0.88285 0.97123 1.20630 1.01271 0.94230 1.07932 1.21215 0.96643 0.95717 0.98678 1.23052 0.95767 0.94484 0.94364 1.60262 1.27277 1.24815 1.08483 1.21660 0.95870 0.91701 0.94263 1.22375 0.93700 0.97417 1.02372 1.23064 0.95252 1.03321 1.00685 1.22932 1.05159 0.97828 0.95927 0.90838 0.86169 0.88947 0.89403 0.91379 0.92995 0.90572 0.91095 0.94531 0.90673 0.87175 0.89012 0.89108 0.89006 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.51 10.95 55.55 0.61 -19.90 16 2 C 0.08 1.94 5.14 -17.34 -0.09 1.86 16 3 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.23 8.87 -37.74 -0.33 -12.57 16 8 H 0.08 1.93 7.84 -52.49 -0.41 1.52 16 9 C 0.14 3.63 5.57 -106.92 -0.60 3.04 16 10 C -0.17 -4.39 8.71 -38.82 -0.34 -4.73 16 11 C -0.10 -2.31 9.99 -39.77 -0.40 -2.70 16 12 C -0.22 -5.15 10.07 -38.96 -0.39 -5.54 16 13 C 0.10 2.25 5.53 -83.43 -0.46 1.79 16 14 C -0.24 -5.84 6.11 -103.37 -0.63 -6.47 16 15 C -0.08 -1.75 6.63 -26.62 -0.18 -1.93 16 16 C 0.05 0.91 6.74 -2.42 -0.02 0.90 16 17 N -0.49 -9.65 5.04 -169.03 -0.85 -10.50 16 18 C 0.09 1.54 5.03 -3.82 -0.02 1.52 16 19 C -0.14 -1.89 5.03 -90.62 -0.46 -2.35 16 20 C -0.19 -2.16 9.81 -26.69 -0.26 -2.42 16 21 C -0.18 -2.04 10.25 -26.69 -0.27 -2.31 16 22 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 23 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 24 H 0.09 1.95 8.06 -52.49 -0.42 1.52 16 25 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 26 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.07 1.10 6.79 -51.93 -0.35 0.75 16 30 H 0.04 0.64 7.77 -51.93 -0.40 0.24 16 31 H 0.07 1.30 8.06 -51.93 -0.42 0.88 16 32 H 0.11 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.09 1.08 8.03 -51.93 -0.42 0.66 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 296.45 15.07 4.47 4.47 Total: -1.00 -27.48 296.45 -10.52 -38.00 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.27 Total: 6.21 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: -4.44 Total: -31.92 kcal Atomic # 7 Polarization: -30.16 SS G_CDS: -0.24 Total: -30.41 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.48 -10.52 -38.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260556268.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.984 kcal (2) G-P(sol) polarization free energy of solvation -27.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds