Wall clock time and date at job start Mon Mar 30 2020 05:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86789 * 120.00159 * 2 1 4 4 H 1.48505 * 109.47233 * 239.99991 * 3 2 1 5 5 H 1.48503 * 109.47315 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47126 * 120.00256 * 3 2 1 7 7 C 1.39931 * 119.99435 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99795 * 197.77178 * 7 2 1 9 9 C 1.41409 * 120.00240 * 17.77850 * 7 2 1 10 10 C 1.40832 * 120.21034 * 24.53317 * 9 7 2 11 11 C 1.37647 * 119.59024 * 179.84193 * 10 9 7 12 12 C 1.38318 * 120.54320 * 359.91717 * 11 10 9 13 13 C 1.39834 * 120.73438 * 0.02562 * 12 11 10 14 14 C 1.38373 * 119.22340 * 0.27084 * 13 12 11 15 15 C 1.51540 * 108.09700 * 179.49074 * 14 13 12 16 16 C 1.54614 * 102.77709 * 343.88557 * 15 14 13 17 17 N 1.40099 * 129.77327 * 180.27829 * 13 12 11 18 18 C 1.46900 * 111.00263 * 76.32011 * 17 13 12 19 19 C 1.53007 * 109.46868 * 189.86870 * 18 17 13 20 20 C 1.53000 * 117.49429 * 243.74186 * 19 18 17 21 21 C 1.53001 * 117.49556 * 175.08324 * 19 18 17 22 22 H 0.96999 * 120.00217 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.20405 * 359.84054 * 10 9 7 24 24 H 1.07995 * 119.72535 * 179.97438 * 11 10 9 25 25 H 1.08005 * 119.63037 * 180.02562 * 12 11 10 26 26 H 1.08999 * 110.74934 * 225.57213 * 15 14 13 27 27 H 1.08999 * 110.75701 * 102.21156 * 15 14 13 28 28 H 1.08999 * 110.80065 * 267.23912 * 16 15 14 29 29 H 1.08997 * 110.79726 * 143.75827 * 16 15 14 30 30 H 1.08995 * 109.47683 * 69.86424 * 18 17 13 31 31 H 1.09003 * 109.46711 * 309.86060 * 18 17 13 32 32 H 1.09000 * 115.54928 * 29.41266 * 19 18 17 33 33 H 1.09001 * 117.50051 * 359.97438 * 20 19 18 34 34 H 1.08996 * 117.49533 * 145.02705 * 20 19 18 35 35 H 1.08999 * 117.49961 * 214.97751 * 21 19 18 36 36 H 1.09000 * 117.49615 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6962 1.2125 7 6 2.0078 -1.2119 0.0005 8 1 3.0492 -1.2342 0.2860 9 6 1.3514 -2.4074 -0.3728 10 6 0.2201 -2.3628 -1.2105 11 6 -0.4071 -3.5346 -1.5686 12 6 0.0658 -4.7524 -1.1141 13 6 1.1882 -4.8178 -0.2826 14 6 1.8231 -3.6458 0.0889 15 6 2.9865 -4.0060 0.9905 16 6 2.6633 -5.4613 1.4009 17 7 1.8252 -5.9331 0.2771 18 6 2.6367 -6.6347 -0.7264 19 6 3.1146 -7.9702 -0.1528 20 6 4.6217 -8.1628 0.0274 21 6 3.8826 -8.9064 -1.0880 22 1 -0.4850 0.8400 0.0004 23 1 -0.1530 -1.4151 -1.5696 24 1 -1.2750 -3.5029 -2.2105 25 1 -0.4374 -5.6628 -1.4046 26 1 3.0136 -3.3554 1.8646 27 1 3.9281 -3.9591 0.4435 28 1 2.1048 -5.4846 2.3366 29 1 3.5753 -6.0531 1.4785 30 1 3.4995 -6.0224 -0.9888 31 1 2.0356 -6.8163 -1.6174 32 1 2.4568 -8.4263 0.5871 33 1 5.2728 -7.3383 -0.2632 34 1 4.9554 -8.7461 0.8855 35 1 3.7304 -9.9785 -0.9632 36 1 4.0470 -8.5710 -2.1120 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260556268.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:09 Heat of formation + Delta-G solvation = 38.554592 kcal Electronic energy + Delta-G solvation = -17125.182305 eV Core-core repulsion = 14573.911679 eV Total energy + Delta-G solvation = -2551.270626 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.28089 -38.49481 -37.04577 -35.21026 -32.82459 -30.62318 -29.64570 -27.06961 -26.77114 -23.59417 -23.13240 -22.01182 -21.60515 -20.90940 -18.85224 -17.45259 -16.82338 -16.66437 -16.09715 -16.00249 -15.52710 -14.97078 -14.54765 -14.34159 -13.90986 -13.56911 -13.44132 -13.11266 -12.82097 -12.70080 -12.57337 -12.34442 -12.30265 -12.14766 -11.92290 -11.72287 -11.23391 -11.15610 -11.04528 -10.83364 -10.05425 -9.30413 -8.63973 -8.50018 -6.34624 0.96880 1.00171 1.36788 1.47780 1.52795 2.19777 2.67740 2.85423 3.02565 3.64509 3.85296 4.00367 4.06090 4.11539 4.30971 4.33913 4.42847 4.58699 4.65107 4.74952 4.80474 4.82127 4.83478 5.04541 5.05988 5.11399 5.12499 5.25014 5.29800 5.34696 5.45932 5.49152 5.91174 5.98399 6.06968 6.15866 6.27827 6.50894 6.73830 6.94520 7.06211 8.33276 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034734 B = 0.006056 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.941314 B = 4622.251008 C = 5119.029652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.494 4.494 8 H 0.072 0.928 9 C 0.104 3.896 10 C -0.198 4.198 11 C -0.097 4.097 12 C -0.229 4.229 13 C 0.096 3.904 14 C -0.263 4.263 15 C -0.082 4.082 16 C 0.059 3.941 17 N -0.492 5.492 18 C 0.095 3.905 19 C -0.155 4.155 20 C -0.177 4.177 21 C -0.167 4.167 22 H 0.288 0.712 23 H 0.105 0.895 24 H 0.117 0.883 25 H 0.108 0.892 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.028 0.972 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.691 -9.685 -0.065 11.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.523 4.523 8 H 0.090 0.910 9 C 0.101 3.899 10 C -0.217 4.217 11 C -0.116 4.116 12 C -0.250 4.250 13 C 0.001 3.999 14 C -0.267 4.267 15 C -0.120 4.120 16 C -0.067 4.067 17 N -0.210 5.210 18 C -0.031 4.031 19 C -0.174 4.174 20 C -0.214 4.214 21 C -0.205 4.205 22 H 0.099 0.901 23 H 0.123 0.877 24 H 0.134 0.866 25 H 0.126 0.874 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.121 0.879 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.128 0.872 33 H 0.107 0.893 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.129 -9.955 0.142 11.691 hybrid contribution 0.436 1.616 -0.296 1.700 sum 6.566 -8.338 -0.154 10.614 Atomic orbital electron populations 1.69882 1.08994 1.30573 1.35553 1.26735 0.95449 1.04406 0.91211 0.85291 0.78837 0.75827 0.79983 1.18596 1.19095 1.18427 1.19698 0.98119 0.92376 1.42137 0.91003 1.17350 0.91597 0.91892 0.89061 1.21271 1.00504 0.97098 1.02864 1.20735 0.98996 0.92331 0.99528 1.20003 0.99952 0.96947 1.08075 1.19391 0.95004 0.89267 0.96204 1.21112 1.02752 0.94139 1.08709 1.21244 0.95610 0.97370 0.97787 1.23105 0.96879 0.92926 0.93832 1.60303 1.28206 1.23262 1.09260 1.21662 0.94853 0.92981 0.93564 1.22175 0.95093 0.96242 1.03874 1.23148 0.93423 1.03339 1.01474 1.23038 1.03183 0.98506 0.95751 0.90134 0.87738 0.86551 0.87352 0.91953 0.92388 0.90219 0.87932 0.95392 0.91589 0.87216 0.89281 0.87260 0.87055 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.82 10.95 21.82 0.24 -43.58 16 2 C 0.04 1.89 5.14 85.25 0.44 2.33 16 3 Si 0.98 38.68 29.59 68.60 2.03 40.71 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.49 -27.10 8.87 23.46 0.21 -26.89 16 8 H 0.07 3.82 7.84 -2.91 -0.02 3.80 16 9 C 0.10 5.77 5.57 -21.36 -0.12 5.65 16 10 C -0.20 -10.74 8.71 22.77 0.20 -10.54 16 11 C -0.10 -4.68 9.99 22.15 0.22 -4.46 16 12 C -0.23 -10.59 10.07 22.68 0.23 -10.37 16 13 C 0.10 4.46 5.53 38.24 0.21 4.67 16 14 C -0.26 -13.21 6.11 -19.06 -0.12 -13.33 16 15 C -0.08 -3.39 6.63 30.67 0.20 -3.19 16 16 C 0.06 2.05 6.74 86.66 0.58 2.63 16 17 N -0.49 -18.75 5.04 -688.68 -3.47 -22.22 16 18 C 0.10 3.06 5.03 86.31 0.43 3.50 16 19 C -0.16 -3.78 5.03 -10.79 -0.05 -3.84 16 20 C -0.18 -3.49 9.81 30.62 0.30 -3.19 16 21 C -0.17 -3.22 10.25 30.62 0.31 -2.91 16 22 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 23 H 0.10 5.88 6.16 -2.91 -0.02 5.87 16 24 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 25 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 26 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.10 2.88 6.79 -2.39 -0.02 2.87 16 30 H 0.03 0.94 7.77 -2.39 -0.02 0.92 16 31 H 0.07 2.21 8.06 -2.39 -0.02 2.19 16 32 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.09 1.83 8.03 -2.39 -0.02 1.81 16 34 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -60.41 296.45 2.90 -57.51 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 1.05 Total: 27.50 kcal Atomic # 6 Polarization: -62.97 SS G_CDS: 3.05 Total: -59.92 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -3.23 Total: -65.81 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -60.41 2.90 -57.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260556268.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.066 kcal (2) G-P(sol) polarization free energy of solvation -60.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds