Wall clock time and date at job start Mon Mar 30 2020 05:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86801 * 119.99819 * 2 1 4 4 H 1.48501 * 109.46723 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46693 * 299.99333 * 3 2 1 6 6 H 1.48496 * 109.47459 * 59.99615 * 3 2 1 7 7 C 1.39869 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00150 * 171.85354 * 7 2 1 9 9 C 1.41135 * 119.99990 * 351.84970 * 7 2 1 10 10 C 1.40902 * 120.30333 * 149.17236 * 9 7 2 11 11 C 1.36110 * 120.02799 * 180.27617 * 10 9 7 12 12 C 1.40124 * 120.51213 * 359.90857 * 11 10 9 13 13 C 1.39683 * 119.43890 * 359.69108 * 12 11 10 14 14 C 1.36153 * 120.74734 * 0.50511 * 13 12 11 15 15 C 1.51631 * 107.83332 * 180.81368 * 13 12 11 16 16 C 1.54601 * 102.72689 * 15.73082 * 15 13 12 17 17 N 1.39295 * 129.67331 * 179.26596 * 12 11 10 18 18 C 1.46899 * 111.00279 * 39.66328 * 17 12 11 19 19 C 1.52996 * 109.47346 * 175.55399 * 18 17 12 20 20 C 1.52999 * 117.50075 * 242.65401 * 19 18 17 21 21 C 1.52997 * 117.50146 * 173.99177 * 19 18 17 22 22 H 0.96997 * 120.00328 * 0.02562 * 1 2 3 23 23 H 1.08001 * 119.98262 * 0.24918 * 10 9 7 24 24 H 1.08003 * 119.74165 * 179.62705 * 11 10 9 25 25 H 1.08003 * 120.05907 * 179.67967 * 14 13 12 26 26 H 1.08997 * 110.76371 * 134.05896 * 15 13 12 27 27 H 1.08998 * 110.76030 * 257.44254 * 15 13 12 28 28 H 1.09003 * 110.76664 * 216.15715 * 16 15 13 29 29 H 1.08996 * 110.77240 * 92.75081 * 16 15 13 30 30 H 1.09001 * 109.46740 * 295.54772 * 18 17 12 31 31 H 1.08997 * 109.47601 * 55.54804 * 18 17 12 32 32 H 1.09001 * 115.54914 * 28.32342 * 19 18 17 33 33 H 1.09004 * 117.49461 * 0.02562 * 20 19 18 34 34 H 1.08998 * 117.50181 * 145.01508 * 20 19 18 35 35 H 1.09003 * 117.50208 * 214.97880 * 21 19 18 36 36 H 1.09002 * 117.49774 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.7030 1.3464 -0.0006 5 1 1.8842 2.3963 -1.2126 6 1 1.8842 2.3965 1.2124 7 6 2.0084 -1.2113 0.0005 8 1 3.0802 -1.2161 -0.1320 9 6 1.3134 -2.4273 0.1744 10 6 1.7869 -3.6093 -0.4290 11 6 1.1091 -4.7778 -0.2623 12 6 -0.0601 -4.8184 0.5090 13 6 -0.5245 -3.6480 1.1138 14 6 0.1401 -2.4706 0.9533 15 6 -1.7797 -3.9935 1.8910 16 6 -1.7146 -5.5359 1.9752 17 7 -0.9020 -5.8914 0.7919 18 6 -0.1296 -7.1174 1.0329 19 6 -1.0776 -8.2443 1.4479 20 6 -0.8962 -8.8418 2.8446 21 6 -0.4829 -9.6447 1.6086 22 1 -0.4850 0.8400 -0.0004 23 1 2.6877 -3.5880 -1.0243 24 1 1.4728 -5.6799 -0.7318 25 1 -0.2318 -1.5713 1.4218 26 1 -1.7521 -3.5505 2.8865 27 1 -2.6699 -3.6738 1.3493 28 1 -2.7121 -5.9694 1.9034 29 1 -1.2195 -5.8524 2.8932 30 1 0.3950 -7.4015 0.1207 31 1 0.5944 -6.9404 1.8282 32 1 -2.0937 -8.1705 1.0601 33 1 -0.1016 -8.4318 3.4681 34 1 -1.7928 -9.1615 3.3757 35 1 -1.1077 -10.4923 1.3271 36 1 0.5840 -9.7632 1.4192 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260560048.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:23 Heat of formation + Delta-G solvation = 50.745185 kcal Electronic energy + Delta-G solvation = -16957.841990 eV Core-core repulsion = 14407.099988 eV Total energy + Delta-G solvation = -2550.742003 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.63113 -37.30585 -35.57712 -33.05720 -31.67908 -29.02116 -27.86968 -26.04501 -24.37745 -22.41029 -21.75467 -20.82745 -19.82688 -19.35168 -17.00492 -16.05951 -15.33722 -15.12164 -14.83144 -14.30978 -13.89208 -13.56894 -13.12091 -12.63550 -12.17548 -11.79146 -11.62102 -11.55292 -11.52211 -11.27527 -11.09644 -11.00201 -10.96916 -10.74282 -10.44894 -10.19908 -9.87257 -9.66802 -9.39505 -9.26091 -8.50441 -7.42409 -6.70317 -6.59832 -4.24925 2.72687 3.02854 3.10753 3.15749 3.16539 3.83364 3.98703 4.44808 4.68479 4.85431 4.97650 5.09018 5.41114 5.50801 5.57982 5.60658 5.67618 5.78157 5.86782 5.91665 6.05121 6.11292 6.18238 6.30659 6.34273 6.39312 6.59146 6.72047 6.92679 7.15598 7.23647 7.38474 7.53765 7.74549 8.00086 8.08780 8.28516 8.35510 8.65434 8.94098 9.01202 10.30590 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.051133 B = 0.005196 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.461828 B = 5387.366694 C = 5742.936795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.202 4.202 11 C -0.100 4.100 12 C -0.040 4.040 13 C -0.114 4.114 14 C -0.122 4.122 15 C -0.081 4.081 16 C 0.052 3.948 17 N -0.463 5.463 18 C 0.081 3.919 19 C -0.144 4.144 20 C -0.185 4.185 21 C -0.180 4.180 22 H 0.277 0.723 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.120 0.880 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.233 -9.769 4.307 10.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.223 4.223 11 C -0.121 4.121 12 C -0.136 4.136 13 C -0.117 4.117 14 C -0.142 4.142 15 C -0.119 4.119 16 C -0.074 4.074 17 N -0.179 5.179 18 C -0.046 4.046 19 C -0.162 4.162 20 C -0.222 4.222 21 C -0.218 4.218 22 H 0.088 0.912 23 H 0.115 0.885 24 H 0.105 0.895 25 H 0.138 0.862 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.780 -9.751 3.885 10.859 hybrid contribution 0.752 0.865 0.462 1.236 sum -2.029 -8.886 4.347 10.098 Atomic orbital electron populations 1.69824 1.07296 1.28692 1.37644 1.25853 0.94843 1.01058 0.92599 0.86232 0.80710 0.81128 0.78416 1.18589 1.20070 1.19924 1.19465 0.95292 0.90290 1.44311 0.90574 1.17528 0.91757 0.92136 0.88827 1.20573 1.02416 0.93524 1.05741 1.19663 0.94379 0.97218 1.00797 1.18978 0.96641 0.90517 1.07449 1.19975 0.96352 0.94493 1.00837 1.20445 0.97581 0.95324 1.00821 1.21182 0.97129 0.94279 0.99280 1.23039 0.97670 0.95373 0.91350 1.60773 1.21562 1.02396 1.33214 1.21827 0.93665 0.89111 1.00014 1.22357 1.01070 0.93599 0.99213 1.23054 1.03131 1.04849 0.91120 1.22934 1.01408 0.94733 1.02718 0.91177 0.88539 0.89546 0.86214 0.91765 0.90914 0.90636 0.93696 0.90717 0.94649 0.87258 0.89039 0.89091 0.88985 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.26 10.85 55.54 0.60 -20.66 16 2 C 0.07 1.83 5.29 -17.34 -0.09 1.74 16 3 Si 0.91 18.97 29.57 -169.99 -5.03 13.95 16 4 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.46 -12.39 9.05 -37.87 -0.34 -12.73 16 8 H 0.08 1.96 7.86 -52.49 -0.41 1.55 16 9 C 0.10 2.70 5.54 -106.78 -0.59 2.10 16 10 C -0.20 -5.02 9.73 -39.34 -0.38 -5.41 16 11 C -0.10 -2.31 9.45 -39.64 -0.37 -2.68 16 12 C -0.04 -0.91 5.96 -83.22 -0.50 -1.40 16 13 C -0.11 -2.71 6.17 -104.37 -0.64 -3.36 16 14 C -0.12 -3.20 8.58 -39.33 -0.34 -3.54 16 15 C -0.08 -1.57 7.05 -26.58 -0.19 -1.76 16 16 C 0.05 0.90 5.88 -2.45 -0.01 0.88 16 17 N -0.46 -8.93 5.11 -168.83 -0.86 -9.79 16 18 C 0.08 1.32 4.81 -3.83 -0.02 1.30 16 19 C -0.14 -1.89 4.89 -90.62 -0.44 -2.33 16 20 C -0.18 -2.08 10.18 -26.69 -0.27 -2.35 16 21 C -0.18 -1.97 10.25 -26.69 -0.27 -2.24 16 22 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 23 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 24 H 0.09 1.78 7.45 -52.48 -0.39 1.39 16 25 H 0.12 3.26 6.29 -52.48 -0.33 2.93 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 30 H 0.07 1.23 7.48 -51.93 -0.39 0.84 16 31 H 0.04 0.60 7.85 -51.93 -0.41 0.19 16 32 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.09 1.05 8.03 -51.93 -0.42 0.64 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 295.84 15.07 4.46 4.46 Total: -1.00 -27.82 295.84 -10.57 -38.39 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.27 Total: 5.44 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: -4.47 Total: -31.78 kcal Atomic # 7 Polarization: -30.19 SS G_CDS: -0.26 Total: -30.45 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.82 -10.57 -38.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260560048.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.132 kcal (2) G-P(sol) polarization free energy of solvation -27.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds