Wall clock time and date at job start Mon Mar 30 2020 05:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86801 * 119.99819 * 2 1 4 4 H 1.48501 * 109.46723 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46693 * 299.99333 * 3 2 1 6 6 H 1.48496 * 109.47459 * 59.99615 * 3 2 1 7 7 C 1.39869 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00150 * 171.85354 * 7 2 1 9 9 C 1.41135 * 119.99990 * 351.84970 * 7 2 1 10 10 C 1.40902 * 120.30333 * 149.17236 * 9 7 2 11 11 C 1.36110 * 120.02799 * 180.27617 * 10 9 7 12 12 C 1.40124 * 120.51213 * 359.90857 * 11 10 9 13 13 C 1.39683 * 119.43890 * 359.69108 * 12 11 10 14 14 C 1.36153 * 120.74734 * 0.50511 * 13 12 11 15 15 C 1.51631 * 107.83332 * 180.81368 * 13 12 11 16 16 C 1.54601 * 102.72689 * 15.73082 * 15 13 12 17 17 N 1.39295 * 129.67331 * 179.26596 * 12 11 10 18 18 C 1.46899 * 111.00279 * 39.66328 * 17 12 11 19 19 C 1.52996 * 109.47346 * 175.55399 * 18 17 12 20 20 C 1.52999 * 117.50075 * 242.65401 * 19 18 17 21 21 C 1.52997 * 117.50146 * 173.99177 * 19 18 17 22 22 H 0.96997 * 120.00328 * 0.02562 * 1 2 3 23 23 H 1.08001 * 119.98262 * 0.24918 * 10 9 7 24 24 H 1.08003 * 119.74165 * 179.62705 * 11 10 9 25 25 H 1.08003 * 120.05907 * 179.67967 * 14 13 12 26 26 H 1.08997 * 110.76371 * 134.05896 * 15 13 12 27 27 H 1.08998 * 110.76030 * 257.44254 * 15 13 12 28 28 H 1.09003 * 110.76664 * 216.15715 * 16 15 13 29 29 H 1.08996 * 110.77240 * 92.75081 * 16 15 13 30 30 H 1.09001 * 109.46740 * 295.54772 * 18 17 12 31 31 H 1.08997 * 109.47601 * 55.54804 * 18 17 12 32 32 H 1.09001 * 115.54914 * 28.32342 * 19 18 17 33 33 H 1.09004 * 117.49461 * 0.02562 * 20 19 18 34 34 H 1.08998 * 117.50181 * 145.01508 * 20 19 18 35 35 H 1.09003 * 117.50208 * 214.97880 * 21 19 18 36 36 H 1.09002 * 117.49774 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.7030 1.3464 -0.0006 5 1 1.8842 2.3963 -1.2126 6 1 1.8842 2.3965 1.2124 7 6 2.0084 -1.2113 0.0005 8 1 3.0802 -1.2161 -0.1320 9 6 1.3134 -2.4273 0.1744 10 6 1.7869 -3.6093 -0.4290 11 6 1.1091 -4.7778 -0.2623 12 6 -0.0601 -4.8184 0.5090 13 6 -0.5245 -3.6480 1.1138 14 6 0.1401 -2.4706 0.9533 15 6 -1.7797 -3.9935 1.8910 16 6 -1.7146 -5.5359 1.9752 17 7 -0.9020 -5.8914 0.7919 18 6 -0.1296 -7.1174 1.0329 19 6 -1.0776 -8.2443 1.4479 20 6 -0.8962 -8.8418 2.8446 21 6 -0.4829 -9.6447 1.6086 22 1 -0.4850 0.8400 -0.0004 23 1 2.6877 -3.5880 -1.0243 24 1 1.4728 -5.6799 -0.7318 25 1 -0.2318 -1.5713 1.4218 26 1 -1.7521 -3.5505 2.8865 27 1 -2.6699 -3.6738 1.3493 28 1 -2.7121 -5.9694 1.9034 29 1 -1.2195 -5.8524 2.8932 30 1 0.3950 -7.4015 0.1207 31 1 0.5944 -6.9404 1.8282 32 1 -2.0937 -8.1705 1.0601 33 1 -0.1016 -8.4318 3.4681 34 1 -1.7928 -9.1615 3.3757 35 1 -1.1077 -10.4923 1.3271 36 1 0.5840 -9.7632 1.4192 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260560048.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:23 Heat of formation + Delta-G solvation = 36.792877 kcal Electronic energy + Delta-G solvation = -16958.447008 eV Core-core repulsion = 14407.099988 eV Total energy + Delta-G solvation = -2551.347020 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.25147 -38.56528 -37.16147 -34.92154 -33.27717 -30.86552 -29.57872 -27.62601 -26.05135 -23.56271 -23.10725 -22.24482 -21.65715 -20.73526 -18.94237 -17.55431 -16.85608 -16.70191 -16.24358 -15.81593 -15.39432 -14.97736 -14.66807 -14.24644 -13.84984 -13.58118 -13.38261 -13.08922 -12.86175 -12.74031 -12.63015 -12.42201 -12.32603 -12.28326 -11.95895 -11.59277 -11.29864 -11.16039 -11.12284 -10.84703 -10.20424 -9.32821 -8.57632 -8.42038 -6.23376 0.90131 1.10222 1.39074 1.48261 1.54015 2.23945 2.71315 2.91064 3.10142 3.66008 3.77283 3.92322 4.03074 4.06910 4.15501 4.35558 4.44004 4.46722 4.63576 4.74379 4.78423 4.80936 4.84451 4.98585 5.04032 5.07030 5.13602 5.28052 5.28546 5.31125 5.39661 5.60653 5.64739 5.89631 6.12544 6.22607 6.41462 6.55079 6.72627 6.97861 7.08138 8.43402 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.051133 B = 0.005196 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.461828 B = 5387.366694 C = 5742.936795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.030 3.970 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.265 1.265 7 C -0.500 4.500 8 H 0.074 0.926 9 C 0.064 3.936 10 C -0.214 4.214 11 C -0.109 4.109 12 C -0.030 4.030 13 C -0.135 4.135 14 C -0.143 4.143 15 C -0.081 4.081 16 C 0.062 3.938 17 N -0.472 5.472 18 C 0.085 3.915 19 C -0.159 4.159 20 C -0.176 4.176 21 C -0.167 4.167 22 H 0.284 0.716 23 H 0.104 0.896 24 H 0.111 0.889 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.889 -11.387 4.998 12.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.531 4.531 8 H 0.092 0.908 9 C 0.062 3.938 10 C -0.234 4.234 11 C -0.129 4.129 12 C -0.127 4.127 13 C -0.138 4.138 14 C -0.163 4.163 15 C -0.118 4.118 16 C -0.064 4.064 17 N -0.188 5.188 18 C -0.042 4.042 19 C -0.177 4.177 20 C -0.213 4.213 21 C -0.205 4.205 22 H 0.094 0.906 23 H 0.122 0.878 24 H 0.129 0.871 25 H 0.118 0.882 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.124 0.876 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.446 -11.405 4.584 12.765 hybrid contribution 0.891 1.184 0.247 1.502 sum -2.555 -10.221 4.831 11.590 Atomic orbital electron populations 1.69900 1.08770 1.29919 1.38425 1.26713 0.95638 1.04324 0.91572 0.85111 0.79210 0.76280 0.78761 1.18220 1.19286 1.19010 1.19704 0.95404 0.91467 1.46493 0.90808 1.17884 0.92763 0.93162 0.90001 1.20766 1.03014 0.93740 1.05917 1.19919 0.94553 0.97536 1.00931 1.19314 0.96063 0.91628 1.05664 1.20457 0.97951 0.94026 1.01339 1.20384 0.98419 0.95712 1.01822 1.21286 0.95004 0.96186 0.99371 1.23112 0.98869 0.93543 0.90910 1.60682 1.21180 1.02279 1.34695 1.21809 0.94068 0.88681 0.99632 1.22182 1.00466 0.93783 1.01283 1.23128 1.03724 1.03965 0.90501 1.23040 1.01800 0.93875 1.01772 0.90582 0.87802 0.87081 0.88174 0.90396 0.90543 0.87632 0.92504 0.91201 0.95488 0.87121 0.89451 0.87308 0.87118 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.91 10.85 21.82 0.24 -45.67 16 2 C 0.03 1.54 5.29 85.23 0.45 1.99 16 3 Si 0.99 39.66 29.57 68.60 2.03 41.69 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 6 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.50 -27.91 9.05 23.38 0.21 -27.70 16 8 H 0.07 3.97 7.86 -2.91 -0.02 3.94 16 9 C 0.06 3.61 5.54 -21.26 -0.12 3.50 16 10 C -0.21 -10.94 9.73 22.43 0.22 -10.72 16 11 C -0.11 -5.03 9.45 22.23 0.21 -4.82 16 12 C -0.03 -1.35 5.96 38.76 0.23 -1.12 16 13 C -0.14 -6.49 6.17 -19.70 -0.12 -6.61 16 14 C -0.14 -7.85 8.58 22.44 0.19 -7.66 16 15 C -0.08 -3.04 7.05 30.69 0.22 -2.83 16 16 C 0.06 1.94 5.88 86.66 0.51 2.45 16 17 N -0.47 -17.33 5.11 -688.05 -3.51 -20.84 16 18 C 0.08 2.58 4.81 86.30 0.41 3.00 16 19 C -0.16 -3.67 4.89 -10.80 -0.05 -3.72 16 20 C -0.18 -3.34 10.18 30.62 0.31 -3.03 16 21 C -0.17 -3.06 10.25 30.62 0.31 -2.75 16 22 H 0.28 14.02 8.30 -92.71 -0.77 13.25 16 23 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 24 H 0.11 4.48 7.45 -2.91 -0.02 4.45 16 25 H 0.10 5.76 6.29 -2.91 -0.02 5.74 16 26 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 28 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.06 1.68 7.86 -2.39 -0.02 1.66 16 30 H 0.07 2.17 7.48 -2.39 -0.02 2.15 16 31 H 0.03 0.87 7.85 -2.39 -0.02 0.85 16 32 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.09 1.75 8.03 -2.38 -0.02 1.73 16 34 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -61.82 295.84 2.80 -59.02 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 1.05 Total: 25.81 kcal Atomic # 6 Polarization: -63.00 SS G_CDS: 2.99 Total: -60.01 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: -3.28 Total: -66.51 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -61.82 2.80 -59.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260560048.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.816 kcal (2) G-P(sol) polarization free energy of solvation -61.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds