Wall clock time and date at job start Mon Mar 30 2020 05:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99636 * 2 1 4 4 H 1.48503 * 109.47316 * 270.00221 * 3 2 1 5 5 H 1.48495 * 109.47124 * 30.00202 * 3 2 1 6 6 H 1.48498 * 109.46816 * 150.00478 * 3 2 1 7 7 C 1.37868 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00495 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99950 * 179.97438 * 7 2 1 10 10 C 1.50705 * 109.47179 * 179.97438 * 9 7 2 11 11 C 1.38264 * 119.99552 * 270.02389 * 10 9 7 12 12 C 1.38224 * 119.99865 * 180.02562 * 11 10 9 13 13 C 1.38180 * 120.03035 * 359.97164 * 12 11 10 14 14 C 1.38452 * 119.96898 * 359.97438 * 13 12 11 15 15 C 1.38185 * 119.96337 * 0.03462 * 14 13 12 16 16 C 1.51176 * 108.25473 * 180.27660 * 14 13 12 17 17 N 1.48216 * 105.59455 * 342.14958 * 16 14 13 18 18 C 1.46898 * 110.87193 * 147.17020 * 17 16 14 19 19 C 1.52999 * 117.50131 * 13.79607 * 18 17 16 20 20 C 1.52994 * 117.50006 * 305.13150 * 18 17 16 21 21 C 1.48058 * 103.80383 * 27.92169 * 17 16 14 22 22 H 0.96994 * 120.00227 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46819 * 59.99909 * 9 7 2 24 24 H 1.08993 * 109.47331 * 299.99659 * 9 7 2 25 25 H 1.07994 * 119.99839 * 359.97438 * 11 10 9 26 26 H 1.07994 * 119.98259 * 179.97438 * 12 11 10 27 27 H 1.07998 * 119.98101 * 179.97438 * 15 14 13 28 28 H 1.09000 * 110.20674 * 101.28320 * 16 14 13 29 29 H 1.09005 * 110.20637 * 223.17879 * 16 14 13 30 30 H 1.09000 * 115.54511 * 159.45953 * 18 17 16 31 31 H 1.08999 * 117.49825 * 359.97438 * 19 18 17 32 32 H 1.09001 * 117.49959 * 145.01598 * 19 18 17 33 33 H 1.09006 * 117.49890 * 214.97826 * 20 18 17 34 34 H 1.08998 * 117.50135 * 359.97438 * 20 18 17 35 35 H 1.09002 * 110.20800 * 213.15703 * 21 17 16 36 36 H 1.08997 * 110.27487 * 91.28792 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0140 -2.6148 -0.0010 11 6 4.2444 -3.2664 1.1965 12 6 4.7057 -4.5694 1.1967 13 6 4.9362 -5.2215 0.0005 14 6 4.7044 -4.5694 -1.1986 15 6 4.2434 -3.2667 -1.1979 16 6 5.0336 -5.5207 -2.3264 17 7 5.8707 -6.5830 -1.7201 18 6 5.6332 -7.8753 -2.3770 19 6 4.8769 -7.8634 -3.7069 20 6 4.1907 -8.3812 -2.4403 21 6 5.4294 -6.6171 -0.3072 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6803 0.8888 24 1 3.8746 -0.6800 -0.8911 25 1 4.0647 -2.7570 2.1317 26 1 4.8860 -5.0779 2.1322 27 1 4.0629 -2.7576 -2.1331 28 1 4.1191 -5.9480 -2.7376 29 1 5.5913 -5.0017 -3.1061 30 1 6.4219 -8.6175 -2.2532 31 1 4.5551 -6.8967 -4.0942 32 1 5.1677 -8.5980 -4.4579 33 1 4.0303 -9.4562 -2.3585 34 1 3.4179 -7.7553 -1.9941 35 1 6.2665 -6.8722 0.3427 36 1 4.6219 -7.3382 -0.1809 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260600021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:39 Heat of formation + Delta-G solvation = 65.798471 kcal Electronic energy + Delta-G solvation = -16744.261523 eV Core-core repulsion = 14194.172280 eV Total energy + Delta-G solvation = -2550.089243 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.49377 -38.10282 -34.96841 -32.93752 -31.29262 -30.51067 -28.11335 -26.97542 -24.27387 -22.70148 -22.05053 -21.34883 -20.22692 -19.38276 -17.03368 -16.79373 -15.83616 -15.16003 -14.84152 -14.50149 -14.07609 -13.89752 -13.46567 -12.86695 -12.60021 -12.41026 -12.18466 -12.06036 -11.73145 -11.66474 -11.59459 -11.16175 -10.83933 -10.66156 -10.41711 -10.21864 -10.02157 -9.97652 -9.40395 -8.71582 -8.60665 -8.20744 -7.66364 -6.09720 -4.09201 1.88000 1.95433 3.27287 3.35208 3.38033 3.48872 3.90102 4.29495 4.39566 4.48808 4.62016 4.71692 4.84127 4.93317 5.23025 5.36957 5.44520 5.45615 5.52898 5.59041 5.66754 5.77172 5.82864 5.87443 5.90981 6.12912 6.18713 6.45588 6.50849 6.57772 6.89481 6.93862 6.99464 7.01026 7.07424 7.54131 7.55627 7.68653 8.46897 8.95134 9.50390 11.03235 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.038071 B = 0.005011 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.295717 B = 5586.131319 C = 5843.793413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.514 4.514 8 H 0.073 0.927 9 C 0.015 3.985 10 C -0.024 4.024 11 C -0.119 4.119 12 C -0.099 4.099 13 C -0.135 4.135 14 C -0.108 4.108 15 C -0.100 4.100 16 C 0.070 3.930 17 N -0.472 5.472 18 C 0.011 3.989 19 C -0.184 4.184 20 C -0.217 4.217 21 C 0.083 3.917 22 H 0.264 0.736 23 H 0.029 0.971 24 H 0.024 0.976 25 H 0.123 0.877 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.128 0.872 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.078 -13.919 -3.330 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.552 4.552 8 H 0.091 0.909 9 C -0.022 4.022 10 C -0.024 4.024 11 C -0.137 4.137 12 C -0.118 4.118 13 C -0.136 4.136 14 C -0.109 4.109 15 C -0.118 4.118 16 C -0.057 4.057 17 N -0.194 5.194 18 C -0.099 4.099 19 C -0.221 4.221 20 C -0.255 4.255 21 C -0.044 4.044 22 H 0.074 0.926 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.141 0.859 26 H 0.131 0.869 27 H 0.137 0.863 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.145 0.855 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.518 -13.703 -3.387 18.218 hybrid contribution -0.693 0.675 0.029 0.968 sum 10.825 -13.028 -3.358 17.268 Atomic orbital electron populations 1.69898 1.06275 1.27015 1.50644 1.24993 0.94737 0.99033 0.94439 0.86801 0.80410 0.83620 0.78680 1.20131 1.21217 1.18890 1.20920 0.88207 0.94668 1.51360 0.90873 1.18814 0.97470 0.88490 0.97469 1.20208 0.92481 0.97887 0.91834 1.20997 1.00094 0.94197 0.98377 1.20331 1.00640 0.94717 0.96073 1.20265 1.03617 0.95623 0.94046 1.20361 1.01047 0.94764 0.94728 1.20360 1.00181 0.92760 0.98520 1.21768 0.96336 0.91452 0.96189 1.65373 1.49129 1.02712 1.02168 1.23064 0.94054 0.93440 0.99292 1.23364 1.03718 1.03619 0.91371 1.23460 0.97481 1.01913 1.02696 1.21520 0.99084 0.93978 0.89805 0.92572 0.95255 0.95764 0.85917 0.86851 0.86348 0.91545 0.89373 0.85454 0.87787 0.88204 0.88356 0.88538 0.89695 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.28 27.47 -169.99 -4.67 16.62 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.51 -14.55 9.65 -34.44 -0.33 -14.88 16 8 H 0.07 2.28 7.98 -52.49 -0.42 1.86 16 9 C 0.01 0.35 4.17 -29.03 -0.12 0.23 16 10 C -0.02 -0.51 5.07 -104.62 -0.53 -1.04 16 11 C -0.12 -2.27 9.70 -39.58 -0.38 -2.66 16 12 C -0.10 -1.66 10.04 -39.61 -0.40 -2.05 16 13 C -0.13 -2.22 6.26 -104.33 -0.65 -2.87 16 14 C -0.11 -1.88 6.26 -104.33 -0.65 -2.53 16 15 C -0.10 -1.95 9.70 -39.61 -0.38 -2.33 16 16 C 0.07 0.99 5.40 -4.02 -0.02 0.97 16 17 N -0.47 -6.24 5.77 -226.79 -1.31 -7.55 16 18 C 0.01 0.12 6.34 -67.72 -0.43 -0.31 16 19 C -0.18 -1.74 9.56 -26.69 -0.26 -1.99 16 20 C -0.22 -2.15 8.83 -26.69 -0.24 -2.38 16 21 C 0.08 1.12 6.50 -4.10 -0.03 1.09 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.03 0.69 7.14 -51.93 -0.37 0.32 16 24 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 25 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 26 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 27 H 0.12 2.22 8.06 -52.49 -0.42 1.79 16 28 H 0.07 0.90 4.97 -51.93 -0.26 0.64 16 29 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.10 1.05 6.00 -51.93 -0.31 0.74 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 1.12 7.19 -51.93 -0.37 0.74 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.76 6.75 -51.93 -0.35 0.41 16 LS Contribution 291.65 15.07 4.40 4.40 Total: -1.00 -30.50 291.65 -10.35 -40.85 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.02 Total: 1.28 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: -4.52 Total: -28.86 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: -0.53 Total: -34.28 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.50 -10.35 -40.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260600021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.651 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds