Wall clock time and date at job start Mon Mar 30 2020 05:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99636 * 2 1 4 4 H 1.48503 * 109.47316 * 270.00221 * 3 2 1 5 5 H 1.48495 * 109.47124 * 30.00202 * 3 2 1 6 6 H 1.48498 * 109.46816 * 150.00478 * 3 2 1 7 7 C 1.37868 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00495 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99950 * 179.97438 * 7 2 1 10 10 C 1.50705 * 109.47179 * 179.97438 * 9 7 2 11 11 C 1.38264 * 119.99552 * 270.02389 * 10 9 7 12 12 C 1.38224 * 119.99865 * 180.02562 * 11 10 9 13 13 C 1.38180 * 120.03035 * 359.97164 * 12 11 10 14 14 C 1.38452 * 119.96898 * 359.97438 * 13 12 11 15 15 C 1.38185 * 119.96337 * 0.03462 * 14 13 12 16 16 C 1.51176 * 108.25473 * 180.27660 * 14 13 12 17 17 N 1.48216 * 105.59455 * 342.14958 * 16 14 13 18 18 C 1.46898 * 110.87193 * 147.17020 * 17 16 14 19 19 C 1.52999 * 117.50131 * 13.79607 * 18 17 16 20 20 C 1.52994 * 117.50006 * 305.13150 * 18 17 16 21 21 C 1.48058 * 103.80383 * 27.92169 * 17 16 14 22 22 H 0.96994 * 120.00227 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46819 * 59.99909 * 9 7 2 24 24 H 1.08993 * 109.47331 * 299.99659 * 9 7 2 25 25 H 1.07994 * 119.99839 * 359.97438 * 11 10 9 26 26 H 1.07994 * 119.98259 * 179.97438 * 12 11 10 27 27 H 1.07998 * 119.98101 * 179.97438 * 15 14 13 28 28 H 1.09000 * 110.20674 * 101.28320 * 16 14 13 29 29 H 1.09005 * 110.20637 * 223.17879 * 16 14 13 30 30 H 1.09000 * 115.54511 * 159.45953 * 18 17 16 31 31 H 1.08999 * 117.49825 * 359.97438 * 19 18 17 32 32 H 1.09001 * 117.49959 * 145.01598 * 19 18 17 33 33 H 1.09006 * 117.49890 * 214.97826 * 20 18 17 34 34 H 1.08998 * 117.50135 * 359.97438 * 20 18 17 35 35 H 1.09002 * 110.20800 * 213.15703 * 21 17 16 36 36 H 1.08997 * 110.27487 * 91.28792 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0140 -2.6148 -0.0010 11 6 4.2444 -3.2664 1.1965 12 6 4.7057 -4.5694 1.1967 13 6 4.9362 -5.2215 0.0005 14 6 4.7044 -4.5694 -1.1986 15 6 4.2434 -3.2667 -1.1979 16 6 5.0336 -5.5207 -2.3264 17 7 5.8707 -6.5830 -1.7201 18 6 5.6332 -7.8753 -2.3770 19 6 4.8769 -7.8634 -3.7069 20 6 4.1907 -8.3812 -2.4403 21 6 5.4294 -6.6171 -0.3072 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6803 0.8888 24 1 3.8746 -0.6800 -0.8911 25 1 4.0647 -2.7570 2.1317 26 1 4.8860 -5.0779 2.1322 27 1 4.0629 -2.7576 -2.1331 28 1 4.1191 -5.9480 -2.7376 29 1 5.5913 -5.0017 -3.1061 30 1 6.4219 -8.6175 -2.2532 31 1 4.5551 -6.8967 -4.0942 32 1 5.1677 -8.5980 -4.4579 33 1 4.0303 -9.4562 -2.3585 34 1 3.4179 -7.7553 -1.9941 35 1 6.2665 -6.8722 0.3427 36 1 4.6219 -7.3382 -0.1809 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260600021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:38 Heat of formation + Delta-G solvation = 47.377939 kcal Electronic energy + Delta-G solvation = -16745.060297 eV Core-core repulsion = 14194.172280 eV Total energy + Delta-G solvation = -2550.888017 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.64884 -39.28825 -36.24813 -34.84071 -32.88058 -31.92501 -29.58938 -28.36184 -25.69996 -24.01768 -23.21613 -22.62325 -21.39562 -20.65601 -18.99572 -18.02944 -16.96293 -16.55459 -16.43901 -15.81936 -15.54908 -15.03021 -14.70874 -14.65682 -14.07204 -13.82599 -13.54616 -13.39871 -13.18597 -13.02972 -12.63254 -12.50320 -12.37099 -12.02774 -11.77829 -11.69768 -11.54576 -11.50200 -11.14647 -10.80927 -9.84720 -9.59962 -9.03575 -8.32146 -6.37793 0.45016 0.51892 1.35793 1.37364 1.49581 2.33859 2.66516 2.84761 2.96016 3.02299 3.46898 3.52022 3.83167 3.96946 4.04338 4.12279 4.23986 4.33990 4.47867 4.50742 4.61553 4.69874 4.72252 4.77233 4.91825 4.97883 4.99764 5.10034 5.15547 5.17420 5.30337 5.42745 5.51719 5.54196 5.75832 5.93002 5.98172 6.10912 6.25566 6.68062 7.25932 8.84521 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.038071 B = 0.005011 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.295717 B = 5586.131319 C = 5843.793413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.245 1.245 7 C -0.521 4.521 8 H 0.025 0.975 9 C 0.022 3.978 10 C -0.059 4.059 11 C -0.132 4.132 12 C -0.096 4.096 13 C -0.134 4.134 14 C -0.117 4.117 15 C -0.116 4.116 16 C 0.074 3.926 17 N -0.478 5.478 18 C 0.004 3.996 19 C -0.180 4.180 20 C -0.215 4.215 21 C 0.087 3.913 22 H 0.268 0.732 23 H 0.034 0.966 24 H 0.029 0.971 25 H 0.126 0.874 26 H 0.148 0.852 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.148 0.852 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.291 -15.209 -3.481 20.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.188 4.188 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.169 1.169 7 C -0.559 4.559 8 H 0.044 0.956 9 C -0.015 4.015 10 C -0.059 4.059 11 C -0.150 4.150 12 C -0.114 4.114 13 C -0.134 4.134 14 C -0.118 4.118 15 C -0.135 4.135 16 C -0.053 4.053 17 N -0.200 5.200 18 C -0.105 4.105 19 C -0.217 4.217 20 C -0.254 4.254 21 C -0.040 4.040 22 H 0.077 0.923 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.144 0.856 26 H 0.165 0.835 27 H 0.133 0.867 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.166 0.834 31 H 0.113 0.887 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.746 -15.014 -3.541 20.662 hybrid contribution -1.419 0.911 0.056 1.687 sum 12.328 -14.103 -3.484 19.053 Atomic orbital electron populations 1.70055 1.08334 1.28351 1.52200 1.25980 0.95605 1.03398 0.93829 0.85638 0.79522 0.78019 0.79401 1.18988 1.20671 1.16880 1.21133 0.90741 0.92973 1.51047 0.95614 1.18647 0.94330 0.90901 0.97635 1.20112 0.95173 0.97146 0.93515 1.21141 1.00653 0.95501 0.97743 1.20641 0.99223 0.93732 0.97815 1.20773 1.01992 0.97102 0.93553 1.20704 1.00078 0.94237 0.96766 1.20402 1.01156 0.94072 0.97874 1.21766 0.96931 0.91303 0.95287 1.65414 1.48782 1.03747 1.02066 1.23240 0.94946 0.92542 0.99796 1.23446 1.02941 1.03759 0.91536 1.23449 0.96447 1.02677 1.02828 1.21596 1.00071 0.91917 0.90420 0.92284 0.94794 0.95282 0.85629 0.83473 0.86733 0.91070 0.88753 0.83440 0.88746 0.86028 0.86459 0.90541 0.87722 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.95 13.96 21.44 0.30 -59.65 16 2 C 0.01 0.53 5.47 84.65 0.46 0.99 16 3 Si 0.95 44.15 27.47 68.60 1.88 46.03 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.25 -10.55 6.54 99.48 0.65 -9.90 16 7 C -0.52 -30.73 9.65 25.60 0.25 -30.48 16 8 H 0.03 1.70 7.98 -2.91 -0.02 1.68 16 9 C 0.02 1.07 4.17 29.11 0.12 1.20 16 10 C -0.06 -2.58 5.07 -19.86 -0.10 -2.69 16 11 C -0.13 -5.08 9.70 22.27 0.22 -4.87 16 12 C -0.10 -3.06 10.04 22.25 0.22 -2.84 16 13 C -0.13 -4.17 6.26 -19.67 -0.12 -4.30 16 14 C -0.12 -4.00 6.26 -19.67 -0.12 -4.12 16 15 C -0.12 -4.65 9.70 22.25 0.22 -4.44 16 16 C 0.07 2.01 5.40 85.45 0.46 2.47 16 17 N -0.48 -11.39 5.77 -871.43 -5.03 -16.42 16 18 C 0.00 0.07 6.34 44.91 0.28 0.35 16 19 C -0.18 -2.92 9.56 30.62 0.29 -2.63 16 20 C -0.22 -3.71 8.83 30.62 0.27 -3.44 16 21 C 0.09 2.08 6.50 85.49 0.56 2.64 16 22 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 23 H 0.03 1.59 7.14 -2.39 -0.02 1.58 16 24 H 0.03 1.36 7.51 -2.39 -0.02 1.34 16 25 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 26 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 27 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 28 H 0.07 1.86 4.97 -2.39 -0.01 1.85 16 29 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 30 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.09 1.73 6.00 -2.39 -0.01 1.72 16 32 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.08 1.65 7.19 -2.39 -0.02 1.63 16 35 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.07 1.58 6.75 -2.39 -0.02 1.56 16 Total: -1.00 -67.83 291.65 1.17 -66.66 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 1.01 Total: 15.53 kcal Atomic # 6 Polarization: -55.15 SS G_CDS: 3.00 Total: -52.15 kcal Atomic # 7 Polarization: -71.34 SS G_CDS: -4.73 Total: -76.07 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.03 kcal Total: -67.83 1.17 -66.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260600021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.036 kcal (2) G-P(sol) polarization free energy of solvation -67.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds