Wall clock time and date at job start Mon Mar 30 2020 05:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00220 * 2 1 4 4 H 1.48501 * 109.47391 * 240.00497 * 3 2 1 5 5 H 1.48505 * 109.47236 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47336 * 120.00149 * 3 2 1 7 7 C 1.37872 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00233 * 180.26867 * 7 2 1 9 9 C 1.50706 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.52691 * 109.32782 * 184.34629 * 9 7 2 11 11 C 1.51991 * 109.29072 * 187.64170 * 10 9 7 12 12 N 1.45588 * 109.44687 * 322.77193 * 11 10 9 13 13 C 1.47805 * 112.73396 * 331.04128 * 12 11 10 14 14 C 1.53092 * 109.32124 * 305.38407 * 9 7 2 15 15 C 1.46434 * 114.35946 * 98.01927 * 12 11 10 16 16 C 1.50826 * 112.39060 * 323.42767 * 15 12 11 17 17 C 1.39219 * 116.88152 * 150.04602 * 16 15 12 18 18 C 1.37817 * 120.73911 * 178.37458 * 17 16 15 19 19 C 1.38262 * 120.00609 * 359.85641 * 18 17 16 20 20 C 1.38042 * 119.51709 * 0.82441 * 19 18 17 21 21 C 1.37697 * 124.20080 * 329.63116 * 16 15 12 22 22 H 0.97001 * 119.99776 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.59993 * 307.31980 * 10 9 7 24 24 H 1.08998 * 109.59895 * 67.80107 * 10 9 7 25 25 H 1.09003 * 109.68302 * 202.65023 * 11 10 9 26 26 H 1.09004 * 109.26531 * 82.63842 * 11 10 9 27 27 H 1.08998 * 109.56162 * 311.66776 * 13 12 11 28 28 H 1.09007 * 109.56493 * 191.32095 * 13 12 11 29 29 H 1.08997 * 109.64328 * 333.71511 * 14 9 7 30 30 H 1.09000 * 109.63809 * 94.33812 * 14 9 7 31 31 H 1.08999 * 108.90268 * 84.17885 * 15 12 11 32 32 H 1.09002 * 108.90242 * 202.77498 * 15 12 11 33 33 H 1.07999 * 119.63308 * 358.37273 * 17 16 15 34 34 H 1.07996 * 119.99746 * 179.85141 * 18 17 16 35 35 H 1.08007 * 120.24444 * 180.79979 * 19 18 17 36 36 H 1.08002 * 119.80530 * 179.89844 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0039 9 6 1.2510 -2.4992 -0.0017 10 6 2.2425 -3.6552 0.1071 11 6 1.5039 -4.9698 -0.0840 12 7 0.1925 -4.8845 0.5423 13 6 0.1685 -3.9579 1.6936 14 6 0.2728 -2.5203 1.1757 15 6 -0.8993 -4.5721 -0.3823 16 6 -0.4807 -3.6020 -1.4587 17 6 -1.1263 -3.7083 -2.6875 18 6 -0.8297 -2.8408 -3.7165 19 6 0.1163 -1.8491 -3.5337 20 6 0.7700 -1.7477 -2.3221 21 6 0.4807 -2.6302 -1.2935 22 1 -0.4850 0.8401 0.0004 23 1 3.0055 -3.5565 -0.6650 24 1 2.7111 -3.6436 1.0912 25 1 2.0726 -5.7801 0.3722 26 1 1.3856 -5.1642 -1.1501 27 1 1.0112 -4.1711 2.3512 28 1 -0.7653 -4.0815 2.2423 29 1 0.6410 -1.8707 1.9697 30 1 -0.7076 -2.1786 0.8437 31 1 -1.2394 -5.4951 -0.8517 32 1 -1.7254 -4.1376 0.1807 33 1 -1.8679 -4.4792 -2.8362 34 1 -1.3361 -2.9356 -4.6656 35 1 0.3425 -1.1591 -4.3332 36 1 1.5109 -0.9758 -2.1749 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260635150.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:27 Heat of formation + Delta-G solvation = 33.935862 kcal Electronic energy + Delta-G solvation = -18635.361223 eV Core-core repulsion = 16083.890314 eV Total energy + Delta-G solvation = -2551.470910 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.22926 -36.88140 -34.25347 -31.44102 -30.53454 -29.91456 -29.07962 -25.90057 -24.40058 -22.87833 -22.24161 -20.80270 -19.41215 -17.78647 -16.60110 -15.34089 -15.18213 -15.01498 -14.54614 -14.25013 -13.51680 -13.26620 -12.39810 -12.32872 -12.00969 -11.93526 -11.88644 -11.54571 -11.42895 -11.14633 -10.89198 -10.72565 -10.50418 -10.24184 -10.22175 -9.93153 -9.38489 -9.17483 -8.82435 -8.51406 -7.76887 -7.46575 -7.30577 -6.06160 -4.15237 2.35974 2.53621 3.24192 3.30830 3.32832 4.33694 4.66042 4.90184 5.18742 5.57711 5.61303 5.75889 5.89168 5.94569 6.03002 6.09983 6.18764 6.22219 6.29378 6.35573 6.48238 6.50031 6.61493 6.70776 6.81118 7.03794 7.05496 7.10931 7.25144 7.27753 7.46849 7.63977 7.72759 7.83019 7.87999 7.93412 8.01731 8.16690 8.40225 8.86772 9.47989 10.96361 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.022022 B = 0.012688 C = 0.009524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.131750 B = 2206.331688 C = 2939.307203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.101 3.899 10 C -0.127 4.127 11 C 0.065 3.935 12 N -0.551 5.551 13 C 0.049 3.951 14 C -0.109 4.109 15 C 0.113 3.887 16 C -0.131 4.131 17 C -0.137 4.137 18 C -0.148 4.148 19 C -0.145 4.145 20 C -0.071 4.071 21 C 0.000 4.000 22 H 0.261 0.739 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.583 -6.141 -1.669 6.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.133 4.133 3 Si 0.711 3.289 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.166 4.166 11 C -0.063 4.063 12 N -0.272 5.272 13 C -0.079 4.079 14 C -0.149 4.149 15 C -0.014 4.014 16 C -0.132 4.132 17 C -0.155 4.155 18 C -0.166 4.166 19 C -0.164 4.164 20 C -0.088 4.088 21 C 0.000 4.000 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.842 -6.474 -1.492 6.697 hybrid contribution 0.430 2.009 -0.490 2.112 sum -0.411 -4.465 -1.982 4.902 Atomic orbital electron populations 1.70007 1.05629 1.26543 1.48291 1.24929 0.94798 0.98727 0.94853 0.86792 0.79775 0.83565 0.78764 1.20208 1.21310 1.20218 1.20974 0.92711 0.89655 1.52347 0.92450 1.17198 0.91027 0.93074 0.88699 1.21814 0.98876 0.95049 1.00852 1.21639 0.89123 0.97193 0.98306 1.61029 1.04481 1.51472 1.10264 1.22533 1.00374 0.92809 0.92178 1.22138 1.01164 0.93184 0.98376 1.20841 0.93785 0.95440 0.91382 1.20468 0.98724 0.98615 0.95420 1.20917 1.00745 1.00080 0.93790 1.20678 1.00082 0.97628 0.98196 1.21072 0.98552 0.98735 0.98005 1.21428 0.98628 0.97775 0.91005 1.20110 0.93041 0.90487 0.96406 0.92908 0.92749 0.92570 0.92241 0.92250 0.92019 0.92292 0.92401 0.91266 0.91598 0.91151 0.88026 0.88102 0.87954 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.14 10.58 55.43 0.59 -22.55 16 2 C 0.07 1.82 3.80 -17.82 -0.07 1.75 16 3 Si 0.88 20.27 29.54 -169.99 -5.02 15.25 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.14 6.31 -34.44 -0.22 -13.35 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.10 2.32 0.48 -156.79 -0.07 2.24 16 10 C -0.13 -2.60 4.45 -27.40 -0.12 -2.72 16 11 C 0.07 1.20 5.92 -5.05 -0.03 1.17 16 12 N -0.55 -10.23 4.88 -237.26 -1.16 -11.39 16 13 C 0.05 0.92 5.52 -3.25 -0.02 0.90 16 14 C -0.11 -2.47 3.86 -26.60 -0.10 -2.58 16 15 C 0.11 2.11 5.28 -5.17 -0.03 2.08 16 16 C -0.13 -2.72 4.38 -104.39 -0.46 -3.18 16 17 C -0.14 -2.62 9.51 -39.37 -0.37 -3.00 16 18 C -0.15 -2.81 10.03 -39.73 -0.40 -3.21 16 19 C -0.15 -3.00 10.07 -39.64 -0.40 -3.40 16 20 C -0.07 -1.64 8.18 -39.53 -0.32 -1.97 16 21 C 0.00 0.01 3.68 -104.56 -0.39 -0.38 16 22 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 23 H 0.05 1.11 8.13 -51.93 -0.42 0.69 16 24 H 0.06 1.12 7.62 -51.93 -0.40 0.72 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 1.12 6.99 -51.93 -0.36 0.75 16 27 H 0.06 1.12 7.55 -51.93 -0.39 0.73 16 28 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 29 H 0.06 1.40 7.73 -51.93 -0.40 1.00 16 30 H 0.07 1.73 6.56 -51.93 -0.34 1.39 16 31 H 0.07 1.10 7.93 -51.93 -0.41 0.69 16 32 H 0.07 1.32 7.43 -51.93 -0.39 0.93 16 33 H 0.10 1.67 7.97 -52.49 -0.42 1.25 16 34 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 36 H 0.13 3.27 5.71 -52.49 -0.30 2.97 16 LS Contribution 269.81 15.07 4.07 4.07 Total: -1.00 -26.29 269.81 -9.58 -35.87 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.06 Total: 4.39 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -3.00 Total: -25.64 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: -0.57 Total: -33.94 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -26.29 -9.58 -35.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260635150.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.810 kcal (2) G-P(sol) polarization free energy of solvation -26.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds