Wall clock time and date at job start Mon Mar 30 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38830 * 119.66586 * 2 1 4 4 C 1.36630 * 120.53087 * 179.97438 * 3 2 1 5 5 C 1.39637 * 119.76169 * 0.02562 * 4 3 2 6 6 C 1.46481 * 134.02997 * 180.02562 * 5 4 3 7 7 C 1.34235 * 106.99627 * 179.97438 * 6 5 4 8 8 C 1.50699 * 125.03477 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47264 * 84.97788 * 8 7 6 10 10 H 1.07997 * 120.00341 * 359.97438 * 9 8 7 11 11 C 1.37881 * 120.00028 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00142 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99970 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.46878 * 89.99926 * 13 11 9 15 15 H 1.48500 * 109.47321 * 209.99616 * 13 11 9 16 16 H 1.48500 * 109.47326 * 329.99779 * 13 11 9 17 17 N 1.36831 * 109.93024 * 0.02562 * 7 6 5 18 18 C 1.46507 * 125.06120 * 179.97438 * 17 7 6 19 19 C 1.37684 * 109.87466 * 0.02562 * 17 7 6 20 20 C 1.37748 * 119.66659 * 179.72120 * 2 1 3 21 21 C 1.50697 * 120.11487 * 0.02624 * 20 2 1 22 22 H 1.09002 * 109.46939 * 90.00911 * 1 2 3 23 23 H 1.08994 * 109.47700 * 330.00350 * 1 2 3 24 24 H 1.09003 * 109.46744 * 210.00262 * 1 2 3 25 25 H 1.07997 * 119.73602 * 359.97020 * 3 2 1 26 26 H 1.07991 * 120.11879 * 179.97438 * 4 3 2 27 27 H 1.08003 * 126.50436 * 359.97438 * 6 5 4 28 28 H 1.09004 * 109.47229 * 204.97957 * 8 7 6 29 29 H 1.08999 * 109.46930 * 324.97307 * 8 7 6 30 30 H 0.96999 * 120.00116 * 180.02562 * 12 11 9 31 31 H 1.08997 * 109.47029 * 263.01151 * 18 17 7 32 32 H 1.09001 * 109.46995 * 23.01452 * 18 17 7 33 33 H 1.08998 * 109.46765 * 143.01463 * 18 17 7 34 34 H 1.08990 * 109.47278 * 96.81400 * 21 20 2 35 35 H 1.09001 * 109.47116 * 216.82225 * 21 20 2 36 36 H 1.09008 * 109.46511 * 336.81679 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1941 1.2063 0.0000 4 6 3.5602 1.2270 0.0005 5 6 4.2716 0.0254 0.0005 6 6 5.6965 -0.3142 0.0015 7 6 5.7806 -1.6539 0.0015 8 6 7.0663 -2.4400 0.0029 9 6 7.5583 -2.5960 1.4188 10 1 6.9964 -2.1683 2.2359 11 6 8.7263 -3.2838 1.6709 12 7 9.4109 -3.8043 0.6759 13 14 9.3364 -3.4766 3.4259 14 1 8.7708 -4.7179 4.0131 15 1 10.8191 -3.5589 3.4283 16 1 8.9043 -2.3064 4.2316 17 7 4.5260 -2.2000 0.0001 18 6 4.2330 -3.6355 -0.0008 19 6 3.5801 -1.1996 -0.0015 20 6 2.1887 -1.1969 0.0058 21 6 1.4303 -2.4991 0.0116 22 1 -0.3633 -0.0002 -1.0277 23 1 -0.3634 0.8899 0.5137 24 1 -0.3633 -0.8900 0.5139 25 1 1.6444 2.1359 -0.0005 26 1 4.0879 2.1691 0.0001 27 1 6.5227 0.3814 0.0020 28 1 6.8909 -3.4243 -0.4313 29 1 7.8159 -1.9115 -0.5861 30 1 10.2325 -4.2885 0.8533 31 1 4.0388 -3.9660 -1.0212 32 1 5.0867 -4.1808 0.4015 33 1 3.3554 -3.8275 0.6165 34 1 1.3532 -2.8791 -1.0070 35 1 1.9580 -3.2242 0.6311 36 1 0.4309 -2.3356 0.4150 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260639411.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:55 Heat of formation + Delta-G solvation = 44.221388 kcal Electronic energy + Delta-G solvation = -17042.169683 eV Core-core repulsion = 14491.144787 eV Total energy + Delta-G solvation = -2551.024896 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.83368 -37.37154 -33.65535 -33.31494 -30.99882 -30.68357 -28.88126 -26.88453 -25.51949 -24.62330 -23.00643 -21.20235 -19.74136 -18.61950 -16.46208 -16.17387 -15.55390 -14.99779 -14.89262 -14.55118 -13.68230 -13.45525 -13.21435 -12.85094 -12.61624 -12.42326 -12.14185 -12.08163 -12.07481 -11.72854 -11.62484 -11.21706 -10.80324 -10.79116 -10.61685 -10.35736 -10.25943 -9.79024 -9.47938 -8.78629 -8.52402 -7.38700 -6.84940 -6.13093 -4.18708 1.63417 2.10867 3.25179 3.31849 3.35692 3.48548 3.53841 4.32974 4.39335 4.99815 5.13215 5.21073 5.24656 5.34258 5.39010 5.50616 5.61369 5.69677 5.72135 5.81127 5.85273 5.96499 6.00198 6.14721 6.20002 6.27474 6.53859 6.63946 6.72473 6.99867 7.07062 7.12517 7.34670 7.39573 7.68878 7.81862 7.99842 8.02623 8.22971 8.86112 9.46230 10.95509 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034886 B = 0.005769 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.421318 B = 4852.757979 C = 5117.865848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.081 4.081 5 C -0.099 4.099 6 C -0.238 4.238 7 C 0.140 3.860 8 C 0.069 3.931 9 C -0.515 4.515 10 H 0.059 0.941 11 C 0.061 3.939 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.272 1.272 17 N -0.480 5.480 18 C 0.072 3.928 19 C 0.090 3.910 20 C -0.094 4.094 21 C -0.120 4.120 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.140 0.860 28 H 0.029 0.971 29 H 0.046 0.954 30 H 0.264 0.736 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.516 3.702 -2.014 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.094 4.094 3 C -0.169 4.169 4 C -0.100 4.100 5 C -0.104 4.104 6 C -0.262 4.262 7 C 0.033 3.967 8 C 0.032 3.968 9 C -0.553 4.553 10 H 0.077 0.923 11 C -0.141 4.141 12 N -0.531 5.531 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.210 1.210 16 H -0.197 1.197 17 N -0.163 5.163 18 C -0.070 4.070 19 C -0.016 4.016 20 C -0.097 4.097 21 C -0.176 4.176 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.130 0.870 26 H 0.133 0.867 27 H 0.157 0.843 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.383 3.240 -2.057 14.887 hybrid contribution 0.516 -0.156 0.934 1.079 sum -13.867 3.085 -1.123 14.250 Atomic orbital electron populations 1.20748 0.91907 1.02098 1.01592 1.19182 0.94981 0.91911 1.03335 1.20299 0.93845 0.96661 1.06140 1.20146 0.93422 0.96169 1.00250 1.19292 0.93819 0.92045 1.05245 1.21307 0.93389 0.94027 1.17452 1.21473 0.86155 0.93435 0.95593 1.18106 0.85967 0.94252 0.98489 1.21016 1.07748 1.34935 0.91631 0.92283 1.24989 0.96381 0.95309 0.97429 1.69947 1.16281 1.35978 1.30943 0.86500 0.77945 0.78615 0.84476 1.20607 1.21029 1.19682 1.43850 1.04584 1.05039 1.62840 1.22119 1.03465 0.79465 1.01923 1.18044 0.89993 0.88172 1.05365 1.18533 0.89513 0.95082 1.06559 1.21007 0.99968 0.94867 1.01776 0.91899 0.92127 0.91713 0.86962 0.86739 0.84265 0.95293 0.93551 0.92671 0.92242 0.88572 0.90557 0.91859 0.91631 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.58 36.00 0.34 -0.83 16 2 C -0.09 -1.38 5.88 -104.58 -0.61 -2.00 16 3 C -0.15 -2.27 9.62 -39.94 -0.38 -2.65 16 4 C -0.08 -1.39 10.05 -39.64 -0.40 -1.79 16 5 C -0.10 -1.99 6.37 -105.14 -0.67 -2.66 16 6 C -0.24 -5.18 10.95 -37.67 -0.41 -5.60 16 7 C 0.14 3.19 6.02 -81.77 -0.49 2.69 16 8 C 0.07 1.75 4.96 -29.04 -0.14 1.61 16 9 C -0.51 -14.11 9.09 -34.44 -0.31 -14.43 16 10 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 13 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 N -0.48 -9.70 3.18 -117.19 -0.37 -10.07 16 18 C 0.07 1.19 10.00 59.85 0.60 1.79 16 19 C 0.09 1.76 6.74 -83.99 -0.57 1.19 16 20 C -0.09 -1.54 5.89 -104.47 -0.62 -2.16 16 21 C -0.12 -1.54 8.98 36.00 0.32 -1.22 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 24 H 0.06 0.64 5.83 -51.93 -0.30 0.34 16 25 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 26 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.14 2.87 8.06 -52.48 -0.42 2.45 16 28 H 0.03 0.74 7.18 -51.93 -0.37 0.37 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.10 1.72 7.06 -51.93 -0.37 1.36 16 33 H 0.08 1.08 5.16 -51.93 -0.27 0.81 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.84 5.08 -51.93 -0.26 0.57 16 36 H 0.07 0.74 5.67 -51.92 -0.29 0.45 16 LS Contribution 293.76 15.07 4.43 4.43 Total: -1.00 -30.06 293.76 -8.46 -38.52 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -4.79 Total: 0.24 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -3.44 Total: -24.46 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.36 Total: -34.88 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.06 -8.46 -38.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260639411.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.743 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds