Wall clock time and date at job start Mon Mar 30 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38830 * 119.66586 * 2 1 4 4 C 1.36630 * 120.53087 * 179.97438 * 3 2 1 5 5 C 1.39637 * 119.76169 * 0.02562 * 4 3 2 6 6 C 1.46481 * 134.02997 * 180.02562 * 5 4 3 7 7 C 1.34235 * 106.99627 * 179.97438 * 6 5 4 8 8 C 1.50699 * 125.03477 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47264 * 84.97788 * 8 7 6 10 10 H 1.07997 * 120.00341 * 359.97438 * 9 8 7 11 11 C 1.37881 * 120.00028 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00142 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99970 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.46878 * 89.99926 * 13 11 9 15 15 H 1.48500 * 109.47321 * 209.99616 * 13 11 9 16 16 H 1.48500 * 109.47326 * 329.99779 * 13 11 9 17 17 N 1.36831 * 109.93024 * 0.02562 * 7 6 5 18 18 C 1.46507 * 125.06120 * 179.97438 * 17 7 6 19 19 C 1.37684 * 109.87466 * 0.02562 * 17 7 6 20 20 C 1.37748 * 119.66659 * 179.72120 * 2 1 3 21 21 C 1.50697 * 120.11487 * 0.02624 * 20 2 1 22 22 H 1.09002 * 109.46939 * 90.00911 * 1 2 3 23 23 H 1.08994 * 109.47700 * 330.00350 * 1 2 3 24 24 H 1.09003 * 109.46744 * 210.00262 * 1 2 3 25 25 H 1.07997 * 119.73602 * 359.97020 * 3 2 1 26 26 H 1.07991 * 120.11879 * 179.97438 * 4 3 2 27 27 H 1.08003 * 126.50436 * 359.97438 * 6 5 4 28 28 H 1.09004 * 109.47229 * 204.97957 * 8 7 6 29 29 H 1.08999 * 109.46930 * 324.97307 * 8 7 6 30 30 H 0.96999 * 120.00116 * 180.02562 * 12 11 9 31 31 H 1.08997 * 109.47029 * 263.01151 * 18 17 7 32 32 H 1.09001 * 109.46995 * 23.01452 * 18 17 7 33 33 H 1.08998 * 109.46765 * 143.01463 * 18 17 7 34 34 H 1.08990 * 109.47278 * 96.81400 * 21 20 2 35 35 H 1.09001 * 109.47116 * 216.82225 * 21 20 2 36 36 H 1.09008 * 109.46511 * 336.81679 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1941 1.2063 0.0000 4 6 3.5602 1.2270 0.0005 5 6 4.2716 0.0254 0.0005 6 6 5.6965 -0.3142 0.0015 7 6 5.7806 -1.6539 0.0015 8 6 7.0663 -2.4400 0.0029 9 6 7.5583 -2.5960 1.4188 10 1 6.9964 -2.1683 2.2359 11 6 8.7263 -3.2838 1.6709 12 7 9.4109 -3.8043 0.6759 13 14 9.3364 -3.4766 3.4259 14 1 8.7708 -4.7179 4.0131 15 1 10.8191 -3.5589 3.4283 16 1 8.9043 -2.3064 4.2316 17 7 4.5260 -2.2000 0.0001 18 6 4.2330 -3.6355 -0.0008 19 6 3.5801 -1.1996 -0.0015 20 6 2.1887 -1.1969 0.0058 21 6 1.4303 -2.4991 0.0116 22 1 -0.3633 -0.0002 -1.0277 23 1 -0.3634 0.8899 0.5137 24 1 -0.3633 -0.8900 0.5139 25 1 1.6444 2.1359 -0.0005 26 1 4.0879 2.1691 0.0001 27 1 6.5227 0.3814 0.0020 28 1 6.8909 -3.4243 -0.4313 29 1 7.8159 -1.9115 -0.5861 30 1 10.2325 -4.2885 0.8533 31 1 4.0388 -3.9660 -1.0212 32 1 5.0867 -4.1808 0.4015 33 1 3.3554 -3.8275 0.6165 34 1 1.3532 -2.8791 -1.0070 35 1 1.9580 -3.2242 0.6311 36 1 0.4309 -2.3356 0.4150 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260639411.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:55 Heat of formation + Delta-G solvation = 29.113532 kcal Electronic energy + Delta-G solvation = -17042.824809 eV Core-core repulsion = 14491.144787 eV Total energy + Delta-G solvation = -2551.680022 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.27221 -38.67869 -35.37585 -34.92694 -32.58451 -32.00244 -30.37300 -28.26421 -26.95754 -25.99551 -24.78777 -22.57838 -21.08234 -20.17819 -18.58541 -17.57981 -17.01504 -16.47400 -16.31886 -16.06711 -14.92889 -14.72055 -14.54559 -14.39144 -14.11775 -13.84843 -13.56331 -13.38311 -13.33077 -13.27842 -13.00465 -12.69946 -12.64464 -12.41784 -11.96364 -11.84396 -11.73527 -11.45747 -11.34330 -10.65866 -10.18685 -8.82426 -8.37320 -8.18055 -6.39455 0.30095 0.79767 1.37394 1.38944 1.50438 1.88080 2.05482 2.39126 3.00849 3.05712 3.82658 3.89596 4.07093 4.11140 4.22253 4.31135 4.38099 4.47111 4.64310 4.69014 4.77757 4.82092 4.90396 4.95802 5.03400 5.06359 5.15659 5.19423 5.22794 5.36576 5.46709 5.65693 5.73411 5.82749 5.99095 6.06619 6.17844 6.44461 6.59174 6.70108 7.29752 8.83273 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034886 B = 0.005769 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.421318 B = 4852.757979 C = 5117.865848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.086 4.086 3 C -0.145 4.145 4 C -0.093 4.093 5 C -0.134 4.134 6 C -0.250 4.250 7 C 0.109 3.891 8 C 0.084 3.916 9 C -0.530 4.530 10 H 0.048 0.952 11 C 0.014 3.986 12 N -0.924 5.924 13 Si 0.964 3.036 14 H -0.269 1.269 15 H -0.277 1.277 16 H -0.271 1.271 17 N -0.485 5.485 18 C 0.070 3.930 19 C 0.074 3.926 20 C -0.108 4.108 21 C -0.118 4.118 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.147 0.853 26 H 0.129 0.871 27 H 0.134 0.866 28 H 0.015 0.985 29 H 0.020 0.980 30 H 0.268 0.732 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.559 4.181 -1.190 18.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.088 4.088 3 C -0.164 4.164 4 C -0.112 4.112 5 C -0.139 4.139 6 C -0.275 4.275 7 C 0.001 3.999 8 C 0.046 3.954 9 C -0.568 4.568 10 H 0.066 0.934 11 C -0.185 4.185 12 N -0.563 5.563 13 Si 0.789 3.211 14 H -0.194 1.194 15 H -0.202 1.202 16 H -0.196 1.196 17 N -0.168 5.168 18 C -0.071 4.071 19 C -0.032 4.032 20 C -0.111 4.111 21 C -0.173 4.173 22 H 0.097 0.903 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.165 0.835 26 H 0.147 0.853 27 H 0.152 0.848 28 H 0.033 0.967 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.447 3.711 -1.239 17.880 hybrid contribution 1.323 -0.203 0.625 1.478 sum -16.123 3.508 -0.614 16.512 Atomic orbital electron populations 1.20845 0.88486 1.03741 1.03090 1.19791 0.97414 0.91135 1.00419 1.20769 0.93119 0.98467 1.04023 1.20438 0.94589 0.95748 1.00410 1.19513 0.92886 0.93914 1.07544 1.21452 0.94876 0.93888 1.17236 1.21025 0.86449 0.93675 0.98707 1.17745 0.87065 0.93497 0.97103 1.21207 1.08179 1.35157 0.92278 0.93373 1.25818 0.96339 0.94715 1.01672 1.70050 1.16727 1.36493 1.33079 0.85455 0.77617 0.78776 0.79275 1.19435 1.20173 1.19582 1.43914 1.03814 1.06328 1.62791 1.22282 1.03553 0.77697 1.03556 1.18497 0.91288 0.87544 1.05857 1.19018 0.88338 0.97483 1.06233 1.21053 1.00722 0.92936 1.02625 0.90259 0.90327 0.90346 0.83488 0.85299 0.84771 0.96673 0.96188 0.92290 0.90388 0.90820 0.87829 0.90780 0.91900 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 9.58 71.23 0.68 -1.07 16 2 C -0.09 -2.25 5.88 -19.84 -0.12 -2.37 16 3 C -0.14 -3.91 9.62 22.04 0.21 -3.70 16 4 C -0.09 -3.08 10.05 22.23 0.22 -2.86 16 5 C -0.13 -5.46 6.37 -20.20 -0.13 -5.58 16 6 C -0.25 -11.51 10.95 23.51 0.26 -11.25 16 7 C 0.11 5.25 6.02 40.86 0.25 5.49 16 8 C 0.08 4.51 4.96 29.10 0.14 4.65 16 9 C -0.53 -30.36 9.09 25.60 0.23 -30.13 16 10 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 11 C 0.01 0.77 5.46 84.66 0.46 1.24 16 12 N -0.92 -54.38 13.29 21.45 0.28 -54.10 16 13 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 14 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 15 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 N -0.49 -20.13 3.18 -524.68 -1.67 -21.80 16 18 C 0.07 2.33 10.00 127.77 1.28 3.61 16 19 C 0.07 2.86 6.74 39.03 0.26 3.12 16 20 C -0.11 -3.28 5.89 -19.77 -0.12 -3.40 16 21 C -0.12 -2.62 8.98 71.23 0.64 -1.99 16 22 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.08 1.07 8.08 -2.39 -0.02 1.06 16 24 H 0.08 1.12 5.83 -2.39 -0.01 1.11 16 25 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 26 H 0.13 3.72 8.06 -2.92 -0.02 3.69 16 27 H 0.13 5.98 8.06 -2.91 -0.02 5.96 16 28 H 0.02 0.83 7.18 -2.38 -0.02 0.81 16 29 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.07 2.77 7.06 -2.39 -0.02 2.75 16 33 H 0.10 2.83 5.16 -2.39 -0.01 2.82 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 1.43 5.08 -2.39 -0.01 1.42 16 36 H 0.09 1.61 5.67 -2.38 -0.01 1.59 16 Total: -1.00 -67.28 293.76 6.00 -61.29 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 1.07 Total: 12.80 kcal Atomic # 6 Polarization: -48.52 SS G_CDS: 4.28 Total: -44.24 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -1.38 Total: -75.90 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -67.28 6.00 -61.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260639411.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.402 kcal (2) G-P(sol) polarization free energy of solvation -67.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds