Wall clock time and date at job start Mon Mar 30 2020 06:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.46824 * 2 1 4 4 C 1.38896 * 125.35676 * 270.02828 * 3 2 1 5 5 C 1.40896 * 126.93360 * 359.97438 * 4 3 2 6 6 H 1.08003 * 119.99582 * 321.74592 * 5 4 3 7 7 C 1.39742 * 120.00129 * 141.73987 * 5 4 3 8 8 N 1.31051 * 119.99887 * 156.12588 * 7 5 4 9 9 Si 1.86800 * 119.99913 * 336.12907 * 7 5 4 10 10 H 1.48504 * 109.46899 * 95.40096 * 9 7 5 11 11 H 1.48502 * 109.46895 * 215.40015 * 9 7 5 12 12 H 1.48502 * 109.47151 * 335.40238 * 9 7 5 13 13 C 1.47675 * 106.13771 * 179.97438 * 4 3 2 14 14 C 1.39190 * 133.77062 * 179.97438 * 13 4 3 15 15 C 1.37880 * 119.68909 * 180.02562 * 14 13 4 16 16 C 1.50702 * 119.87001 * 179.97438 * 15 14 13 17 17 C 1.38669 * 120.25462 * 359.97438 * 15 14 13 18 18 C 1.37868 * 120.62013 * 359.97438 * 17 15 14 19 19 C 1.39115 * 119.97449 * 359.75116 * 18 17 15 20 20 N 1.35634 * 125.35853 * 90.02528 * 3 2 1 21 21 C 1.46501 * 124.69079 * 0.02562 * 20 3 2 22 22 H 1.08995 * 109.47226 * 60.00315 * 1 2 3 23 23 H 1.09002 * 109.46659 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47278 * 299.99474 * 1 2 3 25 25 H 1.09003 * 109.47017 * 240.00329 * 2 1 3 26 26 H 1.08995 * 109.47226 * 119.99685 * 2 1 3 27 27 H 0.96998 * 120.00124 * 180.02562 * 8 7 5 28 28 H 1.07996 * 120.15572 * 359.97438 * 14 13 4 29 29 H 1.08998 * 109.47443 * 90.00060 * 16 15 14 30 30 H 1.09005 * 109.46437 * 209.99956 * 16 15 14 31 31 H 1.08998 * 109.47098 * 329.99263 * 16 15 14 32 32 H 1.07995 * 119.69250 * 179.97438 * 17 15 14 33 33 H 1.08007 * 120.00992 * 180.02562 * 18 17 15 34 34 H 1.08997 * 109.47096 * 90.00084 * 21 20 3 35 35 H 1.09000 * 109.46853 * 209.99923 * 21 20 3 36 36 H 1.08996 * 109.47059 * 329.99592 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2996 2.1788 -1.1328 5 6 2.1566 1.7748 -2.4750 6 1 2.4150 0.7673 -2.7660 7 6 1.6804 2.6775 -3.4295 8 7 1.9700 2.5055 -4.6960 9 14 0.6311 4.1295 -2.9001 10 1 1.4931 5.3264 -2.7277 11 1 -0.3946 4.4036 -3.9385 12 1 -0.0393 3.8128 -1.6135 13 6 2.7640 3.4937 -0.6467 14 6 3.1771 4.6629 -1.2788 15 6 3.5614 5.7494 -0.5218 16 6 4.0100 7.0171 -1.2020 17 6 3.5366 5.6800 0.8629 18 6 3.1284 4.5281 1.5011 19 6 2.7316 3.4233 0.7547 20 7 2.2943 2.1607 1.1062 21 6 2.1288 1.6890 2.4833 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6397 3.1322 -5.3585 28 1 3.1975 4.7186 -2.3571 29 1 3.1493 7.6656 -1.3661 30 1 4.7364 7.5301 -0.5716 31 1 4.4688 6.7727 -2.1600 32 1 3.8398 6.5363 1.4470 33 1 3.1125 4.4850 2.5802 34 1 3.0568 1.2299 2.8241 35 1 1.8820 2.5319 3.1288 36 1 1.3245 0.9544 2.5215 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260654054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:16 Heat of formation + Delta-G solvation = 42.108836 kcal Electronic energy + Delta-G solvation = -17663.217903 eV Core-core repulsion = 15112.101400 eV Total energy + Delta-G solvation = -2551.116503 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.17145 -36.73834 -33.72701 -32.63965 -31.63964 -30.69239 -28.21217 -27.34749 -25.59007 -23.45748 -22.82863 -20.58712 -19.96463 -18.50440 -17.08240 -15.60435 -15.17956 -14.66912 -14.46655 -14.23929 -13.42295 -13.23737 -13.15768 -13.03342 -12.77801 -12.31614 -12.11874 -11.95367 -11.57976 -11.51901 -11.15850 -10.98891 -10.82861 -10.71645 -10.42644 -10.14659 -9.91760 -9.87178 -9.44222 -8.98347 -8.22105 -7.00640 -6.61204 -6.54758 -3.99883 2.05525 2.45916 3.18145 3.34518 3.47619 3.81962 3.86679 4.25814 4.68831 5.26488 5.33458 5.46513 5.62466 5.64234 5.70360 5.76651 5.77530 5.87532 5.92189 6.12800 6.15796 6.24394 6.31242 6.34235 6.41437 6.60468 6.68033 6.78578 6.92400 6.92773 7.07086 7.30981 7.41100 7.53359 7.73934 8.02139 8.32215 8.49509 8.63008 8.95188 9.17304 10.45599 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.016073 B = 0.014220 C = 0.008428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.634158 B = 1968.610944 C = 3321.372879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.022 4.022 3 C -0.090 4.090 4 C 0.041 3.959 5 C -0.451 4.451 6 H 0.086 0.914 7 C 0.095 3.905 8 N -0.832 5.832 9 Si 0.874 3.126 10 H -0.252 1.252 11 H -0.292 1.292 12 H -0.257 1.257 13 C -0.129 4.129 14 C -0.051 4.051 15 C -0.161 4.161 16 C -0.096 4.096 17 C -0.103 4.103 18 C -0.154 4.154 19 C 0.099 3.901 20 N -0.473 5.473 21 C 0.088 3.912 22 H 0.063 0.937 23 H 0.043 0.957 24 H 0.039 0.961 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.276 0.724 28 H 0.117 0.883 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.186 2.439 9.676 9.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.060 4.060 3 C -0.193 4.193 4 C 0.035 3.965 5 C -0.482 4.482 6 H 0.103 0.897 7 C -0.119 4.119 8 N -0.460 5.460 9 Si 0.700 3.300 10 H -0.177 1.177 11 H -0.219 1.219 12 H -0.181 1.181 13 C -0.135 4.135 14 C -0.069 4.069 15 C -0.163 4.163 16 C -0.153 4.153 17 C -0.122 4.122 18 C -0.176 4.176 19 C -0.010 4.010 20 N -0.158 5.158 21 C -0.055 4.055 22 H 0.082 0.918 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.135 0.865 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.265 2.267 9.689 9.955 hybrid contribution -0.515 0.684 0.283 0.902 sum -0.780 2.951 9.972 10.429 Atomic orbital electron populations 1.21733 0.96419 0.99869 1.01894 1.19581 0.94643 0.90925 1.00860 1.20372 1.17886 0.96488 0.84514 1.17982 0.97372 0.88746 0.92392 1.18277 1.41054 0.99897 0.89011 0.89664 1.25695 0.94631 0.97427 0.94161 1.69857 1.37278 1.36551 1.02351 0.86994 0.80722 0.82919 0.79348 1.17717 1.21945 1.18077 1.19544 1.05550 0.96514 0.91910 1.20512 0.96091 0.91089 0.99230 1.19348 1.07423 0.96103 0.93428 1.20554 1.00001 0.94960 0.99803 1.20339 1.01807 0.96439 0.93595 1.19744 1.07648 0.92676 0.97518 1.18110 1.02486 0.86233 0.94130 1.42915 1.58371 1.09763 1.04744 1.21617 1.01343 1.00036 0.82500 0.91777 0.93806 0.94156 0.90545 0.93904 0.91392 0.86468 0.92726 0.92681 0.92405 0.87314 0.87958 0.92935 0.91604 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.89 37.16 0.37 -2.10 16 2 C -0.02 -0.42 5.64 -27.88 -0.16 -0.57 16 3 C -0.09 -2.05 6.21 -80.67 -0.50 -2.55 16 4 C 0.04 1.07 4.98 -104.79 -0.52 0.55 16 5 C -0.45 -12.49 9.37 -38.01 -0.36 -12.85 16 6 H 0.09 2.47 7.84 -52.48 -0.41 2.06 16 7 C 0.10 2.60 5.20 -17.32 -0.09 2.51 16 8 N -0.83 -23.28 13.94 55.54 0.77 -22.51 16 9 Si 0.87 21.59 24.37 -169.99 -4.14 17.45 16 10 H -0.25 -5.96 5.38 56.52 0.30 -5.66 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.26 -6.66 7.11 56.52 0.40 -6.26 16 13 C -0.13 -3.20 5.03 -104.90 -0.53 -3.73 16 14 C -0.05 -1.19 6.85 -39.36 -0.27 -1.46 16 15 C -0.16 -3.24 5.88 -104.59 -0.62 -3.85 16 16 C -0.10 -1.57 10.01 36.01 0.36 -1.21 16 17 C -0.10 -1.90 9.67 -39.56 -0.38 -2.28 16 18 C -0.15 -2.98 9.88 -39.39 -0.39 -3.37 16 19 C 0.10 2.22 6.77 -83.89 -0.57 1.65 16 20 N -0.47 -9.86 3.15 -116.18 -0.37 -10.23 16 21 C 0.09 1.34 10.53 59.85 0.63 1.97 16 22 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 25 H 0.08 1.52 7.72 -51.93 -0.40 1.12 16 26 H 0.04 0.71 7.54 -51.93 -0.39 0.31 16 27 H 0.28 7.12 8.30 -40.82 -0.34 6.78 16 28 H 0.12 2.85 5.89 -52.49 -0.31 2.54 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 31 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 33 H 0.10 1.66 7.96 -52.48 -0.42 1.24 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.89 7.95 -51.93 -0.41 0.47 16 36 H 0.07 0.99 7.41 -51.93 -0.38 0.60 16 LS Contribution 292.46 15.07 4.41 4.41 Total: -1.00 -29.85 292.46 -7.68 -37.53 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.33 Total: 0.65 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -3.02 Total: -27.29 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.41 Total: -32.74 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.14 Total: 17.45 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.85 -7.68 -37.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.641 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds