Wall clock time and date at job start Mon Mar 30 2020 06:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.46824 * 2 1 4 4 C 1.38896 * 125.35676 * 270.02828 * 3 2 1 5 5 C 1.40896 * 126.93360 * 359.97438 * 4 3 2 6 6 H 1.08003 * 119.99582 * 321.74592 * 5 4 3 7 7 C 1.39742 * 120.00129 * 141.73987 * 5 4 3 8 8 N 1.31051 * 119.99887 * 156.12588 * 7 5 4 9 9 Si 1.86800 * 119.99913 * 336.12907 * 7 5 4 10 10 H 1.48504 * 109.46899 * 95.40096 * 9 7 5 11 11 H 1.48502 * 109.46895 * 215.40015 * 9 7 5 12 12 H 1.48502 * 109.47151 * 335.40238 * 9 7 5 13 13 C 1.47675 * 106.13771 * 179.97438 * 4 3 2 14 14 C 1.39190 * 133.77062 * 179.97438 * 13 4 3 15 15 C 1.37880 * 119.68909 * 180.02562 * 14 13 4 16 16 C 1.50702 * 119.87001 * 179.97438 * 15 14 13 17 17 C 1.38669 * 120.25462 * 359.97438 * 15 14 13 18 18 C 1.37868 * 120.62013 * 359.97438 * 17 15 14 19 19 C 1.39115 * 119.97449 * 359.75116 * 18 17 15 20 20 N 1.35634 * 125.35853 * 90.02528 * 3 2 1 21 21 C 1.46501 * 124.69079 * 0.02562 * 20 3 2 22 22 H 1.08995 * 109.47226 * 60.00315 * 1 2 3 23 23 H 1.09002 * 109.46659 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47278 * 299.99474 * 1 2 3 25 25 H 1.09003 * 109.47017 * 240.00329 * 2 1 3 26 26 H 1.08995 * 109.47226 * 119.99685 * 2 1 3 27 27 H 0.96998 * 120.00124 * 180.02562 * 8 7 5 28 28 H 1.07996 * 120.15572 * 359.97438 * 14 13 4 29 29 H 1.08998 * 109.47443 * 90.00060 * 16 15 14 30 30 H 1.09005 * 109.46437 * 209.99956 * 16 15 14 31 31 H 1.08998 * 109.47098 * 329.99263 * 16 15 14 32 32 H 1.07995 * 119.69250 * 179.97438 * 17 15 14 33 33 H 1.08007 * 120.00992 * 180.02562 * 18 17 15 34 34 H 1.08997 * 109.47096 * 90.00084 * 21 20 3 35 35 H 1.09000 * 109.46853 * 209.99923 * 21 20 3 36 36 H 1.08996 * 109.47059 * 329.99592 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2996 2.1788 -1.1328 5 6 2.1566 1.7748 -2.4750 6 1 2.4150 0.7673 -2.7660 7 6 1.6804 2.6775 -3.4295 8 7 1.9700 2.5055 -4.6960 9 14 0.6311 4.1295 -2.9001 10 1 1.4931 5.3264 -2.7277 11 1 -0.3946 4.4036 -3.9385 12 1 -0.0393 3.8128 -1.6135 13 6 2.7640 3.4937 -0.6467 14 6 3.1771 4.6629 -1.2788 15 6 3.5614 5.7494 -0.5218 16 6 4.0100 7.0171 -1.2020 17 6 3.5366 5.6800 0.8629 18 6 3.1284 4.5281 1.5011 19 6 2.7316 3.4233 0.7547 20 7 2.2943 2.1607 1.1062 21 6 2.1288 1.6890 2.4833 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6397 3.1322 -5.3585 28 1 3.1975 4.7186 -2.3571 29 1 3.1493 7.6656 -1.3661 30 1 4.7364 7.5301 -0.5716 31 1 4.4688 6.7727 -2.1600 32 1 3.8398 6.5363 1.4470 33 1 3.1125 4.4850 2.5802 34 1 3.0568 1.2299 2.8241 35 1 1.8820 2.5319 3.1288 36 1 1.3245 0.9544 2.5215 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260654054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:16 Heat of formation + Delta-G solvation = 25.218802 kcal Electronic energy + Delta-G solvation = -17663.950309 eV Core-core repulsion = 15112.101400 eV Total energy + Delta-G solvation = -2551.848910 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.83142 -38.30875 -35.59595 -34.22774 -33.34233 -32.16760 -29.85814 -28.92983 -27.15306 -25.02509 -24.43619 -22.18193 -21.65501 -20.19932 -18.92926 -17.33428 -16.76199 -16.46198 -16.03481 -15.76807 -15.02811 -14.90263 -14.69378 -14.51861 -14.39333 -13.90166 -13.44446 -13.41342 -13.11554 -12.95333 -12.91951 -12.64952 -12.51889 -12.31502 -12.12363 -11.87471 -11.62416 -11.40539 -11.20871 -10.92006 -9.98858 -8.66246 -8.61143 -8.32329 -6.02317 0.40359 0.86167 1.22395 1.31823 1.45938 1.98495 2.25861 2.32757 2.96167 3.33603 3.97546 4.09600 4.15430 4.23846 4.30130 4.37752 4.52061 4.56421 4.64857 4.69493 4.76442 4.82097 4.87626 4.92038 4.98389 5.09611 5.18705 5.21094 5.33498 5.41606 5.47107 5.56466 5.68295 5.91646 6.04186 6.29967 6.37692 6.66830 6.86838 7.02555 7.18476 8.48184 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.016073 B = 0.014220 C = 0.008428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.634158 B = 1968.610944 C = 3321.372879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.027 4.027 3 C -0.056 4.056 4 C -0.023 4.023 5 C -0.468 4.468 6 H 0.048 0.952 7 C 0.059 3.941 8 N -0.881 5.881 9 Si 0.928 3.072 10 H -0.240 1.240 11 H -0.286 1.286 12 H -0.277 1.277 13 C -0.160 4.160 14 C -0.092 4.092 15 C -0.152 4.152 16 C -0.098 4.098 17 C -0.102 4.102 18 C -0.140 4.140 19 C 0.076 3.924 20 N -0.476 5.476 21 C 0.078 3.922 22 H 0.030 0.970 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.279 0.721 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.156 0.844 33 H 0.144 0.856 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.155 3.890 14.049 14.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.065 4.065 3 C -0.161 4.161 4 C -0.029 4.029 5 C -0.501 4.501 6 H 0.066 0.934 7 C -0.150 4.150 8 N -0.513 5.513 9 Si 0.753 3.247 10 H -0.165 1.165 11 H -0.213 1.213 12 H -0.202 1.202 13 C -0.167 4.167 14 C -0.111 4.111 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.121 4.121 18 C -0.161 4.161 19 C -0.032 4.032 20 N -0.160 5.160 21 C -0.063 4.063 22 H 0.049 0.951 23 H 0.096 0.904 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.173 0.827 33 H 0.161 0.839 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.223 3.737 14.105 14.594 hybrid contribution -0.436 0.178 -0.770 0.902 sum -0.660 3.915 13.336 13.914 Atomic orbital electron populations 1.21644 0.94719 1.01869 1.00914 1.19746 0.95999 0.88943 1.01811 1.20971 1.13191 0.97127 0.84823 1.18158 1.01079 0.91196 0.92486 1.18201 1.42530 0.98528 0.90887 0.93414 1.26173 0.95391 0.99383 0.94057 1.69904 1.39934 1.38347 1.03132 0.86174 0.79412 0.81360 0.77734 1.16457 1.21293 1.20249 1.19741 1.06697 0.96432 0.93786 1.20523 0.99438 0.92679 0.98418 1.19880 1.04803 0.96138 0.94605 1.20652 1.01269 0.93552 0.99962 1.20874 1.00488 0.97709 0.93011 1.20251 1.05023 0.91328 0.99470 1.18492 1.03546 0.87757 0.93445 1.43249 1.57245 1.09160 1.06366 1.22029 1.03143 1.01649 0.79441 0.95113 0.90393 0.92701 0.92318 0.90146 0.91077 0.89114 0.91511 0.89265 0.93026 0.82677 0.83859 0.90920 0.89143 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 9.89 71.98 0.71 -3.75 16 2 C -0.03 -0.99 5.64 29.85 0.17 -0.83 16 3 C -0.06 -2.52 6.21 42.13 0.26 -2.26 16 4 C -0.02 -1.24 4.98 -19.98 -0.10 -1.34 16 5 C -0.47 -28.06 9.37 23.28 0.22 -27.84 16 6 H 0.05 3.07 7.84 -2.91 -0.02 3.05 16 7 C 0.06 3.44 5.20 85.17 0.44 3.89 16 8 N -0.88 -53.14 13.94 21.80 0.30 -52.83 16 9 Si 0.93 47.40 24.37 68.60 1.67 49.07 16 10 H -0.24 -11.61 5.38 99.48 0.54 -11.07 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.28 -14.82 7.11 99.48 0.71 -14.12 16 13 C -0.16 -8.08 5.03 -20.04 -0.10 -8.18 16 14 C -0.09 -4.38 6.85 22.41 0.15 -4.23 16 15 C -0.15 -5.79 5.88 -19.85 -0.12 -5.91 16 16 C -0.10 -2.90 10.01 71.24 0.71 -2.18 16 17 C -0.10 -3.29 9.67 22.29 0.22 -3.08 16 18 C -0.14 -4.76 9.88 22.39 0.22 -4.53 16 19 C 0.08 3.24 6.77 38.87 0.26 3.50 16 20 N -0.48 -18.64 3.15 -521.49 -1.64 -20.28 16 21 C 0.08 1.99 10.53 127.77 1.35 3.34 16 22 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 25 H 0.06 2.40 7.72 -2.39 -0.02 2.38 16 26 H 0.08 2.39 7.54 -2.39 -0.02 2.37 16 27 H 0.28 15.48 8.30 -92.71 -0.77 14.71 16 28 H 0.09 4.67 5.89 -2.91 -0.02 4.65 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.09 2.03 8.08 -2.38 -0.02 2.01 16 31 H 0.05 1.58 8.08 -2.39 -0.02 1.56 16 32 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 33 H 0.14 3.68 7.96 -2.91 -0.02 3.65 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.09 1.90 7.95 -2.39 -0.02 1.88 16 36 H 0.09 1.99 7.41 -2.39 -0.02 1.97 16 Total: -1.00 -71.36 292.46 5.61 -65.74 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.88 Total: 11.70 kcal Atomic # 6 Polarization: -57.80 SS G_CDS: 4.40 Total: -53.40 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -1.34 Total: -73.11 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.67 Total: 49.07 kcal Total: -71.36 5.61 -65.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.959 kcal (2) G-P(sol) polarization free energy of solvation -71.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds